Analysis and interpretation of the first monochromatic X-ray tomography data collected at the Australian synchrotron imaging and medical beamline

Journal of Synchrotron Radiation

Volumn 19, Issue 5, 2012, Pages 728-750

  Stevenson, Andrew W ^a   Hall, Christopher J ^b   Mayo, Sheridan C ^a   Häusermann, Daniel ^b   Maksimenko, Anton ^b   Gureyev, Timur E ^a   Nesterets, Yakov I ^a   Wilkins, Stephen W ^a,c   Lewis, Robert A ^c  

^a CSIRO   (Australia)

^b AUSTRALIAN SYNCHROTRON   (Australia)

^c MONASH UNIVERSITY   (Australia)

Author keywords

harmonic contamination; monochromatic; phase contrast; point spread function; resolution; X ray tomography

Indexed keywords

COMPUTERIZED TOMOGRAPHY; HARMONIC FUNCTIONS; IMAGING SYSTEMS; MEDICAL IMAGING; OPTICAL RESOLVING POWER; OPTICAL TRANSFER FUNCTION; WIRE; X RAY ANALYSIS;

MONOCHROMATIC; MONOCHROMATIC X-RAYS; PHASE CONTRASTS; QUANTITATIVE INFORMATION; X RAY IMAGING SYSTEM; X RAY PHASE CONTRAST; X-RAY DYNAMICAL THEORY; X-RAY TOMOGRAPHY;

X RAY DETECTORS;

ARTICLE; ARTIFACT; COMPUTER ASSISTED TOMOGRAPHY; METHODOLOGY; SYNCHROTRON;

ARTIFACTS; SYNCHROTRONS; TOMOGRAPHY, X-RAY COMPUTED;

EID: 84865439565     PISSN: 09090495     EISSN: 16005775     Source Type: Journal    
DOI: 10.1107/S0909049512023618     Document Type: Article

References (107)

1. Abramowitz, M. & Stegun, I. A. (1965). Handbook of MathematicalFunctions with Formulas, Graphs and Mathematical Tables, 1st ed.New York: Dover.
2. Albert, M., Naeser, M. A., Levine, H. L. & Garvey, A. J. (1984). Arch.Neurol. 41, 1264-1269.
3. Authier, A. (2001). Dynamical Theory of X-ray Diffraction, IUCrMonographs on Crystallography, No. 11, 1st ed. Oxford UniversityPress.
4. Barrett, J. F. & Keat, N. (2004). Radiography, 24, 1679-1691.
5. Beltran, M. A., Paganin, D. M., Uesugi, K. & Kitchen, M. J. (2010).Opt. Express, 18, 6423-6436.
6. Bonse, U. & Hart, M. (1965). Appl. Phys. Lett. 7, 238-240.
7. Bourgeois, D., Moy, J. P., Svensson, S. O. & Kvick, A ° . (1994). J. Appl.Cryst. 27, 868-877.
8. Brennan, S. & Cowan, P. L. (1992). Rev. Sci. Instrum. 63, 850-853.
9. Bronnikov, A. V. (2002). J. Opt. Soc. Am. A, 19, 472-480.
10. Cole, H. & Stemple, N. R. (1962). J. Appl. Phys. 33, 2227-2233.
11. Cormack, A. M. (1964). J. Appl. Phys. 34, 2722-2727.
12. Cosslett, V. E. & Nixon, W. C. (1953). J. Appl. Phys. 24, 616-623.
13. Cowley, J. M. (1975). Diffraction Physics, 1st ed. Amsterdam: North-Holland.
14. Donati, J.-F., Morin, J., Petit, P., Delfosse, X., Forveille, T., Aurière,M., Cabanac, R., Dintrans, B., Fares, R., Gastine, T., Jardine, M. M.,Lignières, F., Paletou, F., Ramirez Velez, J. C. & Théado, S. (2008).Mon. Not. R. Astron. Soc. 390, 545-560.
15. Donnelly, E. F., Price, R. R., Lewis, K. G. & Pickens, D. R. (2007).Med. Phys. 34, 3165-3168.
16. Doyle, P. A. & Turner, P. S. (1968). Acta Cryst. A24, 390-397.
17. DuMond, J. W. M. (1937). Phys. Rev. 52, 872-883.
18. Feldkamp, L. A., Davis, L. C. & Kress, J. W. (1984). J. Opt. Soc. Am.A, 1, 612-619.
19. Galigekere, R. R., Wiesent, K. & Holdsworth, D. W. (1999). Med.Phys. 26, 896-904.
20. Gaskill, J. D. (1978). Linear Systems, Fourier Transforms and Optics.New York: Wiley.
21. Gibbs, J. W. (1898). Nature (London), 59, 200.
22. Gibbs, J. W. (1899). Nature (London), 59, 606.
23. Glover, G. H. & Pelc, N. J. (1980). Med. Phys. 7, 238-248.
24. Glover, G. H. & Pelc, N. J. (1981). Med. Phys. 8, 799-807.
25. Golding, S. J. & Shrimpton, P. C. (2002). Br. J. Radiol. 75, 1-4.
26. Graafsma, H. & de Vries, R. Y. (1999). J. Appl. Cryst. 32, 683-691.
27. Graafsma, H. & Martin, T. (2008). In Advanced TomographicMethods in Materials Research and Engineering, ch. 10, 1st ed.,edited by J. Banhart. Oxford University Press.
28. Gradshteyn, I. S. & Ryzhik, I. M. (1965). Table of Integrals, Series andProducts. New York: Academic Press.
29. Gross, F. B. (1995). IEEE Trans. Antennas Propag. 43, 904-907.
30. Guigay, J. P. (1977). Optik, 49, 121-125.
31. Guigay, J. P., Wade, R. H. & Delpla, C. (1971). Electron Microscopyand Analysis, edited byW. C. Nixon, pp. 238-239. London: Instituteof Physics.
32. Gureyev, T. E., Nesterets, Ya. I., Stevenson, A. W., Miller, P. R.,Pogany, A. & Wilkins, S. W. (2008). Opt. Express, 16, 3223-3241.
33. Gureyev, T. E., Paganin, D. M., Myers, G. R., Nesterets, Ya. I. &Wilkins, S. W. (2006). Appl. Phys. Lett. 89, 034102.
34. Hall Jr, M. M., Veeraraghavan, V. G., Rubin, H. & Winchell, P. G.(1977). J. Appl. Cryst. 10, 66-68.
35. Hastings, J. B. (1977). J. Appl. Phys. 48, 1576-1584.
36. Hegerl, R. & Hoppe, W. (1976). Z. Naturforsch. Teil A, 31, 1717-1721.
37. Hounsfield, G. N. (1973). Br. J. Radiol. 46, 1016-1022.
38. Hsieh, J. (2009). Computed Tomography: Principles, Design,Artifacts, and Recent Advances, 2nd ed. Washington: SPIE/JohnWiley and Sons.
39. Hsieh, J., Molthen, R. C., Dawson, C. A. & Johnson, R. H. (2000).Med. Phys. 27, 23-29.
40. ICRU (1989). International Commission on Radiation Units andMeasurements Report No. 44. Bethesda: ICRU.
41. Joseph, P. M. & Spital, R. D. (1982). Med. Phys. 9, 464-472.
42. Kieffer, J. (1938). Am. J. Roentgenol. 39, 497-513.
43. Kyriakou, Y., Meyer, M. & Kalender, W. A. (2008). Phys. Med. Biol.53, N175-N185.
44. Lai, B., Khounsary, A. & Gluskin, E. (1993). Technical Bulletin ANL/APS/TB-11. Argonne National Laboratory/Advanced PhotonSource, Argonnne, IL, USA.
45. Lanczos, C. (1956). Applied Analysis. Princeton: Van Nostrand.
46. Levenberg, K. (1944). Q. Appl. Math. 2, 164-168.
47. Limaye, A. (2006). Drishti - Volume Exploration and PresentationTool. Poster presentation at the 2006 IEEE VisualizationConference, Baltimore, MD, USA (see also http://anusf.anu.edu.au/Vizlab/drishti/index.shtml).
48. Lucy, L. B. (1974). Astron. J. 79, 745-754.
49. McEwen, B. F., Downing, K. H. & Glaeser, R. M. (1995). Ultramicroscopy, 60, 357-373.
50. McMaster, W. H., Del Grande, N. K., Mallett, J. H. & Hubbell, J. H.(1970). Report No. UCRL-50174. LLNL, Livermore, CA, USA.
51. McNitt-Gray, M. F. (2002). Radiography, 22, 1541-1553.
52. Marquardt, D. W. (1963). SIAM J. Appl. Math. 11, 431-441.
53. Matsushita, T. & Hashizume, H. (1983). In Handbook on Synchrotron Radiation, Vol. 1, edited by E. E. Koch, ch. 4. Amsterdam: North-Holland.
54. Matsushita, T. & Kaminaga, U. (1980). J. Appl. Cryst. 13, 472-478.
55. Matsushita, T., Kaminaga, U. & Kohra, K. (1978). Jpn. J. Appl. Phys.17(Suppl. 2), 449-452.
56. Mayo, S. C., Davis, T. J., Gureyev, T. E., Miller, P. R., Paganin, D.,Pogany, A., Stevenson, A.W. &Wilkins, S.W. (2003). Opt. Express,11, 2289-2302.
57. Merritt, R. B. & Chenery, S. G. (1986). Phys. Med. Biol. 31, 55-63.
58. Meyer, M. (1998). PhD thesis, University of Lausanne, Switzerland.
59. Miller, M. K. (2000). Atom Probe Tomography: Analysis at theAtomic Level. New York: Kluwer Academic/Plenum.
60. Moffat, A. F. J. (1969). Astron. Astrophys. 3, 455-461.
61. Morgan, K. S., Siu, K. K. W. & Paganin, D. M. (2010). Opt. Express,18, 9865-9878.
62. Naday, I., Ross, S., Kanyo, M., Westbrook, E. & Westbrook, M.(1994). Nucl. Instrum. Methods Phys. Res. A, 347, 534-538.
63. Nakajima, N. (2007). Phys. Rev. Lett. 98, 223901.
64. Natterer, F. (2001). The Mathematics of Computerized Tomography. Philadelphia: SIAM.
65. NBS (1976). Monograph 25, Section 13, p. 35. National Bureau ofStandards, Washington, DC, USA.
66. Nuzzo, S., Peyrin, F., Cloetens, P., Baruchel, J. & Boivin, G. (2002).Med. Phys. 29, 2672-2681.
67. Nyquist, H. (1928). Trans. AIEE, 47, 617-644.
68. Ohnesorge, B., Flohr, T., Schwarz, K., Heiken, J. P. & Bae, K. T.(2000). Med. Phys. 27, 39-46.
69. Orsi, T. H., Edwards, C. M. & Anderson, A. L. (1994). J. Sediment.Res. 64, 690-693.
70. Paganin, D. M. (2006). Coherent X-ray Optics, Oxford Series onSynchrotron Radiation, No. 6. New York: Oxford University Press.
71. Paganin, D., Mayo, S. C., Gureyev, T. E., Miller, P. R. & Wilkins, S. W.(2002). J. Microsc. 206, 33-40.
72. Pearson, K. (1916). Philos. Trans. R. Soc. London Ser. A, 216, 429-457.
73. Pianetta, P. & Lindau, I. (1977). J. Electron. Spectrosc. Relat. Phenom.11, 13-38.
74. Pogany, A., Gao, D. & Wilkins, S. W. (1997). Rev. Sci. Instrum. 68,2774-2782.
75. Prager, P. R. (1971). PhD thesis, University of Melbourne, Australia.
76. Radon, J. H. (1917). Ber. Verh. Königl. Sächs. Akad. Wiss. (Reportson the Proceedings of the Saxony Academy of Science), 69, 262-277.
77. [Translation by Parks, P. C. (1986). IEEE Trans. Med. Imag. 5, 170-176.]
78. Rho, J. Y., Hobatho, M. C. & Ashman, R. B. (1995). Med. Eng. Phys.17, 347-355.
79. Richardson, W. H. (1972). J. Opt. Soc. Am. 62, 55-59.
80. Roberto, J. B. & Batterman, B. W. (1970). Phys. Rev. B, 2, 3220-3226.
81. Robertson, D. D., Weiss, P. J., Fishman, E. K., Magid, D. & Walker,P. S. (1988). J. Comput. Assist. Tomogr. 12, 236-241.
82. Rustichelli, F., Romanzetti, S., Dubini, B., Girardin, E., Raven, C.,Snigirev, A. & Rizzi, G. (2004). J. Mater. Sci. Mater. Med. 15, 1053-1057.
83. Servidori, M., Cembali, F. & Milita, S. (2001). Appl. Phys. A, 73, 75-82.
84. Shannon, C. E. (1949). Proc. IRE, 37, 10-21.
85. Siewerdsen, J. H. & Jaffray, D. A. (2001). Med. Phys. 28, 220-231.
86. Sijbers, J. & Postnov, A. (2004). Phys. Med. Biol. 49, N247-N253.
87. Snigirev, A., Snigireva, I., Kohn, V., Kuznetsov, S. & Schelokov, I.(1995). Rev. Sci. Instrum. 66, 5486-5492.
88. Spanne, P., Raven, C., Snigireva, I. & Snigirev, A. (1999). Phys. Med.Biol. 44, 741-749.
89. Stevenson, A. W., Mayo, S. C., Häusermann, D., Maksimenko, A.,Garrett, R. F., Hall, C. J.,Wilkins, S.W., Lewis, R. A. &Myers, D. E.(2010). J. Synchrotron Rad. 17, 75-80.
90. Tanaka, T. & Kitamura, H. (2001). J. Synchrotron Rad. 8, 1221-1228.
91. Teague, M. R. (1983). J. Opt. Soc. Am. 73, 1434-1441.
92. Tikhonov, A. N. & Arsenin, V. Y. (1977). Solution of Ill-PosedProblems. New York: Halsted.
93. Tran, C. Q., Barnea, Z., de Jonge, M. D., Dhal, B. B., Paterson, D.,Cookson, D. J. & Chantler, C. T. (2003). X-ray Spectrosc. 32, 69-74.
94. Trujillo, I., Aguerri, J. A. L., Cepa, J. & Gutiérrez, C. M. (2001). Mon.Not. R. Astron. Soc. 328, 977-985.
95. Tsuchiyama, A., Uesugi, K., Nakano, T. & Ikeda, S. (2005). Am.Mineral. 90, 132-142.
96. Vallebona, A. (1931). Radiol. Med. 17, 1090-1097.
97. Vidal, F. P., Le'tang, J. M., Peix, G. & Cloetens, P. (2005). Nucl.Instrum. Methods Phys. Res. B, 234, 333-348.
98. Wiener, N. (1949). Extrapolation, Interpolation and Smoothing of Stationary Time Series. New York: Wiley.
99. Wilkins, S.W., Gureyev, T. E., Gao, D., Pogany, A. & Stevenson, A.W.(1996). Nature (London), 384, 335-338.
100. Xu, S. & Li, R. (1988). J. Appl. Cryst. 21, 213-217.
101. Yang, C.-K., Orphanoudakis, S. C. & Strohbehn, J. W. (1982). Phys.Med. Biol. 27, 51-61.
102. Yang, Q. X., Xu, P. & Zheng, S. F. (2010a). Sci. China Tech. Sci. 53,512-518.
103. Yang, Y. S., Gureyev, T. E., Tulloh, A., Clennell, M. B. & Pervukhina,M. (2010b). Meas. Sci. Tech. 21, 047001.
104. Young, R. A. & Wiles, D. B. (1982). J. Appl. Cryst. 15, 430-438.
105. Zachariasen, W. H. (1945). Theory of X-ray Diffraction in Crystals.New York: Wiley.
106. Ziedses Des Plantes, B. G. (1932). Acta Radiol. 13, 182-192.
107. Zschornack, G. (2007). Handbook of X-ray Data. Berlin: Springer.