Exploring the genetic diversity of Ethiopian grass pea (Lathyrus sativus L.) using EST-SSR markers

Molecular Breeding

Volumn 30, Issue 2, 2012, Pages 789-797

  Shiferaw, E ^a   Pe M E ^a   Porceddu, E ^b   Ponnaiah, M ^a  

^a SCUOLA SUPERIORE SANT ANNA   (Italy)

^b UNIVERSITY OF TUSCIA   (Italy)

Author keywords

EST SSR; Genetic diversity; Lathyrus sativus

Indexed keywords

BIODIVERSITY; BIOMARKERS; CLUSTER ANALYSIS; DNA SEQUENCES; GENES;

COST-EFFECTIVE MEANS; CROSS-SPECIES; EXPRESSED SEQUENCE TAG-SIMPLE SEQUENCE REPEAT; EXPRESSED SEQUENCE TAGS; GENETICS DIVERSITIES; LATHYRUS SATIVUS; MEDICAGO TRUNCATULA; PUBLIC DATABASE; SIMPLE SEQUENCE REPEATS; SIMPLE SEQUENCE-REPEAT MARKERS;

COST EFFECTIVENESS;

LATHYRUS SATIVUS; MEDICAGO TRUNCATULA; PISUM SATIVUM;

EID: 84865414194     PISSN: 13803743     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11032-011-9662-y     Document Type: Article

References (44)

1. Belaid Y, Chtourou-Ghorbel N, Marrakchi M, Trifi-Farah N (2006) Genetic diversity within and between populations of Lathyrus genus (Fabaceae) revealed by ISSR markers. Genet Resour Crop Evol 53: 1413-1418.
2. Brookfield JF (1996) A simple new method for estimating null allele frequency from heterozygote deficiency. Mol Ecol 5: 453-455.
3. Campbell CG (1997) Grass pea. Lathyrus sativus L. Promoting the conservation and use of underutilized and neglected crops. 18. Institute of Plant Genetics and Crop Plan Research, Gatersleben/International Plant Genetic Resources Institute. Rome, Italy.
4. Campbell CG, Mehra RB, Agrawal SK, Chen YZ, Abd EL, Moneim AM, Kawaja HIT, Yadav CR, Tay JU, Araya WA (1994) Current status and future strategy in breeding grass pea (Lathyrus sativus). Euphytica 73: 167-175.
5. Chabane K, Ablett GA, Cordeiro GM, Valkoun J, Henry RJ (2005) EST versus genomic derived microsatellite markers for genotyping wild and cultivated barley. Gen Res Crop Evol 52: 903-909.
6. Chandra A (2011) Use of EST database markers from M. truncatula in the transferability to other forage legumes. J Environ Biol 32: 347-354.
7. Choudhary S, Sethy NK, Shokeen B, Bhatia S (2009) Development of chickpea EST-SSR markers and analysis of allelic variation across related species. Theor Appl Genet 118: 591-608.
8. Chowdhury MA, Slinkard AE (1997) Natural out crossing in grass pea. J Hered 88(2): 154-156.
9. Chowdhury MA, Slinkard AE (2000) Genetic diversity in grass pea (Lathyrus sativus L.). Genet Resour Crop Evol 47: 163-169.
10. Chtourou-Ghorbel N, Lauga B, Combes D, Marrakchi M (2001) Comparative genetic diversity studies in the genus Lathyrus using RFLP and RAPD markers. Lathyrus Lathyrism Newsl 2: 62-68.
11. Croft AM, Pang ECK, Taylor PWJ (1999) Molecular analysis of Lathyrus sativus L. (grass pea) and related Lathyrus species. Euphytica 107: 167-176.
12. CSA (2007) Agricultural sample survey 2006/2007. Report on area and production of crops volume I. Central Statistics Authority, Ethiopia.
13. Duke JA (1981) Handbook of legumes of world economic importance. Plenum Press, New York.
14. Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14: 2611-2620.
15. Falush D, Stephens M, Pritchard JK (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164: 1567-1587.
16. Frankel OH, Brown AHD, Burdon JJ (1995) The conservation of plant biodiversity. Cambridge University Press, Cambridge, pp 10-15.
17. Gepts P (2006) Plant genetic resources conservation and utilization: The accomplishments and future of a societal insurance policy. Crop Sci 46: 2278-2292.
18. Gupta S, Prasad M (2009) Development and characterization of genic SSR markers in Medicago truncatula and their transferability in leguminous and non-leguminous species. Genome 52(9): 761-771.
19. Gupta PK, Varshney RK (2000) The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat. Euphytica 113: 163-185.
20. Gupta PK, Rustgi S, Sharma S, Singh R, Kumar N, Balyan HS (2003) Transferable EST-SSR markers for the study of polymorphism and genetic diversity in bread wheat. Mol Gen Genomics 270: 315-323.
21. Gutierrez MV, Vaz Patto MC, Huguet T, Cubero JI, Moreno MT, Torres AM (2005) Cross-species amplification of Medicago truncatula microsatellites across three major pulse crops. Theor Appl Genet 110: 1210-1217.
22. Gutiérrez-Marcos JF, Vaquero F, Sáenz de Miera LE, Vences FJ (2006) High genetic diversity in a world-wide collection of Lathyrus sativus L. revealed by isozymatic analysis. Plant Genetic Resour 4: 159-171.
23. Holton TA, Christopher JT, McClure L, Harker N, Henry RJ (2002) Identification and mapping of polymorphic SSR markers from expressed gene sequences of barley and wheat. Mol Breed 9: 63-71.
24. Kantety R, La Rota VM, Matthews DE, Sorrells ME (2002) Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat. Plant Mol Biol 48: 501-510.
25. Katti MV, Ranjekar PK, Gupta VS (2001) Differential distribution of simple sequence repeats in eukaryotic genome sequences. Mol Biol Evol 18(7): 1161-1167.
26. Lioi L, Sparvoli F, Sonnante G, Laghetti G, Lupo F, Zaccardelli M (2011) Characterization of Italian grass pea (Lathyrus sativus L.) germplasm using agronomic traits, biochemical and molecular markers. Genet Resour Crop Evol 58: 425-437.
27. Liu K, Muse SV (2005) PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics 21(9): 2128-2129.
28. Louette D, Charrier A, Berthaud J (1997) In situ conservation of maize in Mexico: Genetic diversity and maize seed management in a traditional community. Econ Bot 51(1): 20-38.
29. Oosterhout Van, Hutchinson WF, Wills DPM, Shipley PF (2004) MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4: 535-538.
30. Palmer VS, Kaul AK, Spencer PS (1989) International Network for the Improvement of Lathyrus sativus and the Eradication of Lathyrism (INILSEL): a TWMRF initiative. In: Spencer PS (ed) The grass pea: threat and promise. Third World Medical Research Foundation, New York, pp 219-223.
31. Park Yj, Dixit A, Ma KH, Lee JK, Lee MH, Chung CS, Nitta M, Okuno K, Kim TS, Cho EG, Rao VR (2008) Evaluation of genetic diversity and relationships within an on-farm collection of Perilla frutescens (L.) Britt. Using microsatellite markers. Genet Resour Crop Evol 55: 523-535.
32. Peakall R, Smouse PE (2006) GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 6: 288-295.
33. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
34. Roussel V, Koenig J, Beckert M, Balfourier F (2004) Molecular diversity in French bread wheat accessions related to temporal trends and breeding programmes. Theor Appl Genet 108: 920-930.
35. Schuelke M (2000) An economic method for the fluorescent labeling of PCR fragments. Nature Biotechnol 18: 233-234.
36. Scott KD, Eggler P, Seaton G, Rosetto M, Ablett EM, Lee LS, Henry RJ (2000) Analysis of SSRs derived from grape ESTs. Theor Appl Genet 100: 723-726.
37. Tadesse W, Bekele E (2003) Phenotypic diversity of Ethiopian grass pea (Lathyrus sativus L.) in relation to geographical regions and altitudinal range. Gen Res Crop Evol 50: 497-505.
38. Tavoletti S, Iommarini L (2007) Molecular marker analysis of genetic variation characterizing a grasspea (Lathyrus sativus) collection from central Italy. Plant Breed 126(6): 607-611.
39. Thiel T, Michalek W, Varshney RK, Graner A (2003) Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.). Theor Appl Genet 106: 411-422.
40. Tiwaril KR, Campbell CG (1996) Inheritance of neurotoxin (ODAP) content flower and seed coat colour in grass pea (Lathyrus sativus L.). Euphytica 91: 195-203.
41. Tsegaye D, Tadesse W, Bayable M (2005) Performance of grass pea (Lathyrus sativus L.) somaclones at Adet, northwest Ethiopia. Lathyrus Lathyrism Newsl 4: 5-6.
42. Weber JL, May PE (1989) Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am J Hum Genet 44: 388-396.
43. Yadav SS, Bejiga G (2006). Lathyrus sativus L. Record from Protabase. In: Brink M, Belay G (eds) PROTA (Plant Resources of Tropical Africa). Wageningen, Netherlands (http://database.prota.org/search.htm).
44. Zane L, Bargelloni L, Patarnello T (2002) Strategies for microsatellite isolation: a review. Mol Ecol 11: 1-16.