-
1
-
-
0031593202
-
Codon bias evolution in Drosophila. Population genetics of mutation-selection drift
-
Akashi H. Codon bias evolution in Drosophila. Population genetics of mutation-selection drift. Gene 1997, 205:269-278.
-
(1997)
Gene
, vol.205
, pp. 269-278
-
-
Akashi, H.1
-
3
-
-
77957370433
-
Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics
-
Arensburger P., Megy K., Waterhouse R.M., Abrudan J., Amedeo P., Antelo B., Bartholomay L., Bidwell S., Caler E., Camara F., Campbell C.L., Campbell K.S., Casola C., Castro M.T., Chandramouliswaran I., Chapman S.B., Christley S., Costas J., Eisenstadt E., Feschotte C., Fraser-Liggett C., Guigo R., Haas B., Hammond M., Hansson B.S., Hemingway J., Hill S.R., Howarth C., Ignell R., Kennedy R.C., Kodira C.D., Lobo N.F., Mao C., Mayhew G., Michel K., Mori A., Liu N., Naveira H., Nene V., Nguyen N., Pearson M.D., Pritham E.J., Puiu D., Qi Y., Ranson H., Ribeiro J.M., Roberston H.M., Severson D.W., Shumway M., Stanke M., Strausberg R.L., Sun C., Sutton G., Tu Z.J., Tubio J.M., Unger M.F., Vanlandingham D.L., Vilella A.J., White O., White J.R., Wondji C.S., Wortman J., Zdobnov E.M., Birren B., Christensen B.M., Collins F.H., Cornel A., Dimopoulos G., Hannick L.I., Higgs S., Lanzaro G.C., Lawson D., Lee N.H., Muskavitch M.A., Raikhel A.S., Atkinson P.W. Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics. Science 2010, 330:86-88.
-
(2010)
Science
, vol.330
, pp. 86-88
-
-
Arensburger, P.1
Megy, K.2
Waterhouse, R.M.3
Abrudan, J.4
Amedeo, P.5
Antelo, B.6
Bartholomay, L.7
Bidwell, S.8
Caler, E.9
Camara, F.10
Campbell, C.L.11
Campbell, K.S.12
Casola, C.13
Castro, M.T.14
Chandramouliswaran, I.15
Chapman, S.B.16
Christley, S.17
Costas, J.18
Eisenstadt, E.19
Feschotte, C.20
Fraser-Liggett, C.21
Guigo, R.22
Haas, B.23
Hammond, M.24
Hansson, B.S.25
Hemingway, J.26
Hill, S.R.27
Howarth, C.28
Ignell, R.29
Kennedy, R.C.30
Kodira, C.D.31
Lobo, N.F.32
Mao, C.33
Mayhew, G.34
Michel, K.35
Mori, A.36
Liu, N.37
Naveira, H.38
Nene, V.39
Nguyen, N.40
Pearson, M.D.41
Pritham, E.J.42
Puiu, D.43
Qi, Y.44
Ranson, H.45
Ribeiro, J.M.46
Roberston, H.M.47
Severson, D.W.48
Shumway, M.49
Stanke, M.50
Strausberg, R.L.51
Sun, C.52
Sutton, G.53
Tu, Z.J.54
Tubio, J.M.55
Unger, M.F.56
Vanlandingham, D.L.57
Vilella, A.J.58
White, O.59
White, J.R.60
Wondji, C.S.61
Wortman, J.62
Zdobnov, E.M.63
Birren, B.64
Christensen, B.M.65
Collins, F.H.66
Cornel, A.67
Dimopoulos, G.68
Hannick, L.I.69
Higgs, S.70
Lanzaro, G.C.71
Lawson, D.72
Lee, N.H.73
Muskavitch, M.A.74
Raikhel, A.S.75
Atkinson, P.W.76
more..
-
4
-
-
79952293706
-
Coadaptation of isoacceptor tRNA genes and codon usage bias for translation efficiency in Aedes aegypti and Anopheles gambiae
-
Behura S.K., Severson D.W. Coadaptation of isoacceptor tRNA genes and codon usage bias for translation efficiency in Aedes aegypti and Anopheles gambiae. Insect Mol. Biol. 2011, 20:177-187.
-
(2011)
Insect Mol. Biol.
, vol.20
, pp. 177-187
-
-
Behura, S.K.1
Severson, D.W.2
-
5
-
-
84865383935
-
Intrinsic features of Aedes aegypti genes affect transcriptional responsiveness of mosquito genes to dengue virus infection
-
Behura S.K., Severson D.W. Intrinsic features of Aedes aegypti genes affect transcriptional responsiveness of mosquito genes to dengue virus infection. Infect. Genet. Evol. 2012, 12:1413-1418.
-
(2012)
Infect. Genet. Evol.
, vol.12
, pp. 1413-1418
-
-
Behura, S.K.1
Severson, D.W.2
-
6
-
-
75649098217
-
Comparative analysis of nuclear tRNA genes of Nasonia vitripennis and other arthropods, and relationships to codon usage bias
-
Behura S.K., Stanke M., Desjardins C.A., Werren J.H., Severson D.W. Comparative analysis of nuclear tRNA genes of Nasonia vitripennis and other arthropods, and relationships to codon usage bias. Insect Mol. Biol. 2010, 19(Suppl. 1):49-58.
-
(2010)
Insect Mol. Biol.
, vol.19
, Issue.SUPPL. 1
, pp. 49-58
-
-
Behura, S.K.1
Stanke, M.2
Desjardins, C.A.3
Werren, J.H.4
Severson, D.W.5
-
7
-
-
82555200799
-
Global cross-talk of genes of the mosquito Aedes aegypti in response to dengue virus infection
-
Behura S.K., Gomez-Machorro C., Harker B.W., Debruyn B., Lovin D.D., Hemme R.R., Mori A., Romero-Severson J., Severson D.W. Global cross-talk of genes of the mosquito Aedes aegypti in response to dengue virus infection. PLoS Negl Trop Dis. 2011, 5:e1385.
-
(2011)
PLoS Negl Trop Dis.
, vol.5
-
-
Behura, S.K.1
Gomez-Machorro, C.2
Harker, B.W.3
Debruyn, B.4
Lovin, D.D.5
Hemme, R.R.6
Mori, A.7
Romero-Severson, J.8
Severson, D.W.9
-
8
-
-
0028132216
-
Codon context and protein synthesis: enhancements of the genetic code
-
Buckingham R.H. Codon context and protein synthesis: enhancements of the genetic code. Biochimie 1994, 76:351-354.
-
(1994)
Biochimie
, vol.76
, pp. 351-354
-
-
Buckingham, R.H.1
-
9
-
-
0025941139
-
The selection-mutation-drift theory of synonymous codon usage
-
Bulmer M. The selection-mutation-drift theory of synonymous codon usage. Genetics 1991, 129:897-907.
-
(1991)
Genetics
, vol.129
, pp. 897-907
-
-
Bulmer, M.1
-
10
-
-
3042742751
-
Experimental reduction of codon bias in the Drosophila alcohol dehydrogenase gene results in decreased ethanol tolerance of adult flies
-
Carlini D.B. Experimental reduction of codon bias in the Drosophila alcohol dehydrogenase gene results in decreased ethanol tolerance of adult flies. J. Evol. Biol. 2004, 17:779-785.
-
(2004)
J. Evol. Biol.
, vol.17
, pp. 779-785
-
-
Carlini, D.B.1
-
11
-
-
35748929942
-
DNA reference alignment benchmarks based on tertiary structure of encoded proteins
-
Carroll H., Beckstead W., O'Connor T., Ebbert M., Clement M., Snell Q., McClellan D. DNA reference alignment benchmarks based on tertiary structure of encoded proteins. Bioinformatics 2007, 23:2648-2649.
-
(2007)
Bioinformatics
, vol.23
, pp. 2648-2649
-
-
Carroll, H.1
Beckstead, W.2
O'Connor, T.3
Ebbert, M.4
Clement, M.5
Snell, Q.6
McClellan, D.7
-
12
-
-
1542618322
-
Codon usage between genomes is constrained by genome-wide mutational processes
-
Chen S.L., Lee W., Hottes A.K., Shapiro L., McAdams H.H. Codon usage between genomes is constrained by genome-wide mutational processes. Proc. Natl. Acad. Sci. USA 2004, 101:3480-3485.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 3480-3485
-
-
Chen, S.L.1
Lee, W.2
Hottes, A.K.3
Shapiro, L.4
McAdams, H.H.5
-
13
-
-
46449120581
-
Virus attenuation by genome-scale changes in codon pair bias
-
Coleman J.R., Papamichail D., Skiena S., Futcher B., Wimmer E., Mueller S. Virus attenuation by genome-scale changes in codon pair bias. Science 2008, 320:1784-1787.
-
(2008)
Science
, vol.320
, pp. 1784-1787
-
-
Coleman, J.R.1
Papamichail, D.2
Skiena, S.3
Futcher, B.4
Wimmer, E.5
Mueller, S.6
-
14
-
-
77952294607
-
Quality measures for protein alignment benchmarks
-
Edgar R.C. Quality measures for protein alignment benchmarks. Nucleic Acids Res. 2010, 38:2145-2153.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 2145-2153
-
-
Edgar, R.C.1
-
15
-
-
40849124052
-
Simulating DNA coding sequence evolution with EvolveAGene 3
-
Hall B.G. Simulating DNA coding sequence evolution with EvolveAGene 3. Mol. Biol. Evol. 2008, 25:688-695.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 688-695
-
-
Hall, B.G.1
-
16
-
-
37249045872
-
Variable strength of translational selection among 12 Drosophila species
-
Heger A., Ponting C.P. Variable strength of translational selection among 12 Drosophila species. Genetics 2007, 177:1337-1348.
-
(2007)
Genetics
, vol.177
, pp. 1337-1348
-
-
Heger, A.1
Ponting, C.P.2
-
18
-
-
0032976592
-
The neutralist, the fly and the selectionist
-
Hey J. The neutralist, the fly and the selectionist. Trends Ecol. Evol. 1999, 14(1):35-38.
-
(1999)
Trends Ecol. Evol.
, vol.14
, Issue.1
, pp. 35-38
-
-
Hey, J.1
-
19
-
-
0037020114
-
The genome sequence of the malaria mosquito Anopheles gambiae
-
Holt R.A., Subramanian G.M., Halpern A., Sutton G.G., Charlab R., Nusskern D.R., Wincker P., Clark A.G., Ribeiro J.M., Wides R., Salzberg S.L., Loftus B., Yandell M., Majoros W.H., Rusch D.B., Lai Z., Kraft C.L., Abril J.F., Anthouard V., Arensburger P., Atkinson P.W., Baden H., de Berardinis V., Baldwin D., Benes V., Biedler J., Blass C., Bolanos R., Boscus D., Barnstead M., Cai S., Center A., Chaturverdi K., Christophides G.K., Chrystal M.A., Clamp M., Cravchik A., Curwen V., Dana A., Delcher A., Dew I., Evans C.A., Flanigan M., Grundschober-Freimoser A., Friedli L., Gu Z., Guan P., Guigo R., Hillenmeyer M.E., Hladun S.L., Hogan J.R., Hong Y.S., Hoover J., Jaillon O., Ke Z., Kodira C., Kokoza E., Koutsos A., Letunic I., Levitsky A., Liang Y., Lin J.J., Lobo N.F., Lopez J.R., Malek J.A., McIntosh T.C., Meister S., Miller J., Mobarry C., Mongin E., Murphy S.D., O'Brochta D.A., Pfannkoch C., Qi R., Regier M.A., Remington K., Shao H., Sharakhova M.V., Sitter C.D., Shetty J., Smith T.J., Strong R., Sun J., Thomasova D., Ton L.Q., Topalis P., Tu Z., Unger M.F., Walenz B., Wang A., Wang J., Wang M., Wang X., Woodford K.J., Wortman J.R., Wu M., Yao A., Zdobnov E.M., Zhang H., Zhao Q., Zhao S., Zhu S.C., Zhimulev I., Coluzzi M., dellaTorre A., Roth C.W., Louis C., Kalush F., Mural R.J., Myers E.W., Adams M.D., Smith H.O., Broder S., Gardner M.J., Fraser C.M., Birney E., Bork P., Brey P.T., Venter J.C., Weissenbach J., Kafatos F.C., Collins F.H., Hoffman S.L. The genome sequence of the malaria mosquito Anopheles gambiae. Science 2002, 298:129-149.
-
(2002)
Science
, vol.298
, pp. 129-149
-
-
Holt, R.A.1
Subramanian, G.M.2
Halpern, A.3
Sutton, G.G.4
Charlab, R.5
Nusskern, D.R.6
Wincker, P.7
Clark, A.G.8
Ribeiro, J.M.9
Wides, R.10
Salzberg, S.L.11
Loftus, B.12
Yandell, M.13
Majoros, W.H.14
Rusch, D.B.15
Lai, Z.16
Kraft, C.L.17
Abril, J.F.18
Anthouard, V.19
Arensburger, P.20
Atkinson, P.W.21
Baden, H.22
de Berardinis, V.23
Baldwin, D.24
Benes, V.25
Biedler, J.26
Blass, C.27
Bolanos, R.28
Boscus, D.29
Barnstead, M.30
Cai, S.31
Center, A.32
Chaturverdi, K.33
Christophides, G.K.34
Chrystal, M.A.35
Clamp, M.36
Cravchik, A.37
Curwen, V.38
Dana, A.39
Delcher, A.40
Dew, I.41
Evans, C.A.42
Flanigan, M.43
Grundschober-Freimoser, A.44
Friedli, L.45
Gu, Z.46
Guan, P.47
Guigo, R.48
Hillenmeyer, M.E.49
Hladun, S.L.50
Hogan, J.R.51
Hong, Y.S.52
Hoover, J.53
Jaillon, O.54
Ke, Z.55
Kodira, C.56
Kokoza, E.57
Koutsos, A.58
Letunic, I.59
Levitsky, A.60
Liang, Y.61
Lin, J.J.62
Lobo, N.F.63
Lopez, J.R.64
Malek, J.A.65
McIntosh, T.C.66
Meister, S.67
Miller, J.68
Mobarry, C.69
Mongin, E.70
Murphy, S.D.71
O'Brochta, D.A.72
Pfannkoch, C.73
Qi, R.74
Regier, M.A.75
Remington, K.76
Shao, H.77
Sharakhova, M.V.78
Sitter, C.D.79
Shetty, J.80
Smith, T.J.81
Strong, R.82
Sun, J.83
Thomasova, D.84
Ton, L.Q.85
Topalis, P.86
Tu, Z.87
Unger, M.F.88
Walenz, B.89
Wang, A.90
Wang, J.91
Wang, M.92
Wang, X.93
Woodford, K.J.94
Wortman, J.R.95
Wu, M.96
Yao, A.97
Zdobnov, E.M.98
Zhang, H.99
more..
-
20
-
-
0029162727
-
Codon pair utilization biases influence translational elongation step times
-
Irwin B., Heck J.D., Hatfield G.W. Codon pair utilization biases influence translational elongation step times. J. Biol. Chem. 1995, 270:22801-22806.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 22801-22806
-
-
Irwin, B.1
Heck, J.D.2
Hatfield, G.W.3
-
21
-
-
0032126484
-
Gene length and codon usage bias in Drosophila melanogaster, Saccharomyces cerevisiae and Escherichia coli
-
Moriyama E.N., Powell J.R. Gene length and codon usage bias in Drosophila melanogaster, Saccharomyces cerevisiae and Escherichia coli. Nucleic Acids Res. 1998, 26:3188-3193.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 3188-3193
-
-
Moriyama, E.N.1
Powell, J.R.2
-
22
-
-
39449087192
-
Large scale comparative codon-pair context analysis unveils general rules that fine-tune evolution of mRNA primary structure
-
Moura G., Pinheiro M., Arrais J., Gomes A.C., Carreto L., Freitas A., Oliveira J.L., Santos M.A. Large scale comparative codon-pair context analysis unveils general rules that fine-tune evolution of mRNA primary structure. PLoS ONE 2007, 2:e847.
-
(2007)
PLoS ONE
, vol.2
-
-
Moura, G.1
Pinheiro, M.2
Arrais, J.3
Gomes, A.C.4
Carreto, L.5
Freitas, A.6
Oliveira, J.L.7
Santos, M.A.8
-
23
-
-
33748923860
-
Reduction of the rate of poliovirus protein synthesis through large-scale codon deoptimization causes attenuation of viral virulence by lowering specific infectivity
-
Mueller S., Papamichail D., Coleman J.R., Skiena S., Wimmer E. Reduction of the rate of poliovirus protein synthesis through large-scale codon deoptimization causes attenuation of viral virulence by lowering specific infectivity. J. Virol. 2006, 80:9687-9696.
-
(2006)
J. Virol.
, vol.80
, pp. 9687-9696
-
-
Mueller, S.1
Papamichail, D.2
Coleman, J.R.3
Skiena, S.4
Wimmer, E.5
-
24
-
-
34250902354
-
Genome sequence of Aedes aegypti, a major arbovirus vector
-
Nene V., Wortman J.R., Lawson D., Haas B., Kodira C., Tu Z.J., Loftus B., Xi Z., Megy K., Grabherr M., Ren Q., Zdobnov E.M., Lobo N.F., Campbell K.S., Brown S.E., Bonaldo M.F., Zhu J., Sinkins S.P., Hogenkamp D.G., Amedeo P., Arensburger P., Atkinson P.W., Bidwell S., Biedler J., Birney E., Bruggner R.V., Costas J., Coy M.R., Crabtree J., Crawford M., Debruyn B., Decaprio D., Eiglmeier K., Eisenstadt E., El-Dorry H., Gelbart W.M., Gomes S.L., Hammond M., Hannick L.I., Hogan J.R., Holmes M.H., Jaffe D., Johnston J.S., Kennedy R.C., Koo H., Kravitz S., Kriventseva E.V., Kulp D., Labutti K., Lee E., Li S., Lovin D.D., Mao C., Mauceli E., Menck C.F., Miller J.R., Montgomery P., Mori A., Nascimento A.L., Naveira H.F., Nusbaum C., O'leary S., Orvis J., Pertea M., Quesneville H., Reidenbach K.R., Rogers Y.H., Roth C.W., Schneider J.R., Schatz M., Shumway M., Stanke M., Stinson E.O., Tubio J.M., Vanzee J.P., Verjovski-Almeida S., Werner D., White O., Wyder S., Zeng Q., Zhao Q., Zhao Y., Hill C.A., Raikhel A.S., Soares M.B., Knudson D.L., Lee N.H., Galagan J., Salzberg S.L., Paulsen I.T., Dimopoulos G., Collins F.H., Birren B., Fraser-Liggett C.M., Severson D.W. Genome sequence of Aedes aegypti, a major arbovirus vector. Science 2007, 316:1718-1723.
-
(2007)
Science
, vol.316
, pp. 1718-1723
-
-
Nene, V.1
Wortman, J.R.2
Lawson, D.3
Haas, B.4
Kodira, C.5
Tu, Z.J.6
Loftus, B.7
Xi, Z.8
Megy, K.9
Grabherr, M.10
Ren, Q.11
Zdobnov, E.M.12
Lobo, N.F.13
Campbell, K.S.14
Brown, S.E.15
Bonaldo, M.F.16
Zhu, J.17
Sinkins, S.P.18
Hogenkamp, D.G.19
Amedeo, P.20
Arensburger, P.21
Atkinson, P.W.22
Bidwell, S.23
Biedler, J.24
Birney, E.25
Bruggner, R.V.26
Costas, J.27
Coy, M.R.28
Crabtree, J.29
Crawford, M.30
Debruyn, B.31
Decaprio, D.32
Eiglmeier, K.33
Eisenstadt, E.34
El-Dorry, H.35
Gelbart, W.M.36
Gomes, S.L.37
Hammond, M.38
Hannick, L.I.39
Hogan, J.R.40
Holmes, M.H.41
Jaffe, D.42
Johnston, J.S.43
Kennedy, R.C.44
Koo, H.45
Kravitz, S.46
Kriventseva, E.V.47
Kulp, D.48
Labutti, K.49
Lee, E.50
Li, S.51
Lovin, D.D.52
Mao, C.53
Mauceli, E.54
Menck, C.F.55
Miller, J.R.56
Montgomery, P.57
Mori, A.58
Nascimento, A.L.59
Naveira, H.F.60
Nusbaum, C.61
O'leary, S.62
Orvis, J.63
Pertea, M.64
Quesneville, H.65
Reidenbach, K.R.66
Rogers, Y.H.67
Roth, C.W.68
Schneider, J.R.69
Schatz, M.70
Shumway, M.71
Stanke, M.72
Stinson, E.O.73
Tubio, J.M.74
Vanzee, J.P.75
Verjovski-Almeida, S.76
Werner, D.77
White, O.78
Wyder, S.79
Zeng, Q.80
Zhao, Q.81
Zhao, Y.82
Hill, C.A.83
Raikhel, A.S.84
Soares, M.B.85
Knudson, D.L.86
Lee, N.H.87
Galagan, J.88
Salzberg, S.L.89
Paulsen, I.T.90
Dimopoulos, G.91
Collins, F.H.92
Birren, B.93
Fraser-Liggett, C.M.94
Severson, D.W.95
more..
-
25
-
-
0033613376
-
Inferring the historical patterns of biological evolution
-
Pagel M. Inferring the historical patterns of biological evolution. Nature 1999, 401:877-884.
-
(1999)
Nature
, vol.401
, pp. 877-884
-
-
Pagel, M.1
-
26
-
-
4243140058
-
A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data
-
Pagel M., Meade A. A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data. Syst. Biol. 2004, 53:571-581.
-
(2004)
Syst. Biol.
, vol.53
, pp. 571-581
-
-
Pagel, M.1
Meade, A.2
-
27
-
-
78650304100
-
Synonymous but not the same: the causes and consequences of codon bias
-
Plotkin J.B., Kudla G. Synonymous but not the same: the causes and consequences of codon bias. Nat. Rev. Genet. 2011, 12:32-42.
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 32-42
-
-
Plotkin, J.B.1
Kudla, G.2
-
29
-
-
0346120050
-
Analysis of a shift in codon usage in Drosophila
-
Powell J.R., Sezzi E., Moriyama E.N., Gleason J.M., Caccone A. Analysis of a shift in codon usage in Drosophila. J. Mol. Evol. 2003, 57(Suppl. 1):S214-S225.
-
(2003)
J. Mol. Evol.
, vol.57
, Issue.SUPPL. 1
-
-
Powell, J.R.1
Sezzi, E.2
Moriyama, E.N.3
Gleason, J.M.4
Caccone, A.5
-
30
-
-
82255194216
-
Mutation bias is the driving force of codon usage in the Gallus gallus genome
-
Rao Y., Wu G., Wang Z., Chai X., Nie Q., Zhang X. Mutation bias is the driving force of codon usage in the Gallus gallus genome. DNA Res. 2011, 18:499-512.
-
(2011)
DNA Res.
, vol.18
, pp. 499-512
-
-
Rao, Y.1
Wu, G.2
Wang, Z.3
Chai, X.4
Nie, Q.5
Zhang, X.6
-
31
-
-
8744310123
-
Codon usage bias from tRNA's point of view: redundancy, specialization, and efficient decoding for translation optimization
-
Rocha E.P. Codon usage bias from tRNA's point of view: redundancy, specialization, and efficient decoding for translation optimization. Genome Res. 2004, 14:2279-2286.
-
(2004)
Genome Res.
, vol.14
, pp. 2279-2286
-
-
Rocha, E.P.1
-
32
-
-
0347513220
-
DnaSP, DNA polymorphism analyses by the coalescent and other methods
-
Rozas J., Sánchez-DelBarrio J.C., Messeguer X., Rozas R. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 2003, 19:2496-2497.
-
(2003)
Bioinformatics
, vol.19
, pp. 2496-2497
-
-
Rozas, J.1
Sánchez-DelBarrio, J.C.2
Messeguer, X.3
Rozas, R.4
-
33
-
-
0023375195
-
The Neighbor-Joining method: a new method for reconstructing phylogenetic trees
-
Saitou N., Nei M. The Neighbor-Joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
34
-
-
83455205862
-
Mosquito genomics: progress and challenges
-
Severson D.W., Behura S.K. Mosquito genomics: progress and challenges. Annu. Rev. Entomol. 2012, 57:143-166.
-
(2012)
Annu. Rev. Entomol.
, vol.57
, pp. 143-166
-
-
Severson, D.W.1
Behura, S.K.2
-
35
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
Tamura K., Dudley J., Nei M., Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
36
-
-
3342920601
-
Prospects for inferring very large phylogenies by using the Neighbor-Joining method
-
Tamura K., Nei M., Kumar S. Prospects for inferring very large phylogenies by using the Neighbor-Joining method. Proc. Natl. Acad. Sci. USA 2004, 101:11030-11035.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 11030-11035
-
-
Tamura, K.1
Nei, M.2
Kumar, S.3
-
37
-
-
56749163584
-
Preferred and avoided codon pairs in three domains of life
-
Tats A., Tenson T., Remm M. Preferred and avoided codon pairs in three domains of life. BMC Genomics 2008, 9:463.
-
(2008)
BMC Genomics
, vol.9
, pp. 463
-
-
Tats, A.1
Tenson, T.2
Remm, M.3
-
39
-
-
0035140887
-
Intron length and codon usage
-
Vinogradov A.E. Intron length and codon usage. J. Mol. Evol. 2001, 52:2-5.
-
(2001)
J. Mol. Evol.
, vol.52
, pp. 2-5
-
-
Vinogradov, A.E.1
-
40
-
-
13444269018
-
Quantitative relationship between synonymous codon usage bias and GC composition across unicellular genomes
-
Wan X.F., Xu D., Kleinhofs A., Zhou J. Quantitative relationship between synonymous codon usage bias and GC composition across unicellular genomes. BMC Evol. Biol. 2004, 4:19.
-
(2004)
BMC Evol. Biol.
, vol.4
, pp. 19
-
-
Wan, X.F.1
Xu, D.2
Kleinhofs, A.3
Zhou, J.4
-
41
-
-
0036073165
-
Shannon information theoretic computation of synonymous codon usage biases in coding regions of human and mouse genomes
-
Zeeberg B. Shannon information theoretic computation of synonymous codon usage biases in coding regions of human and mouse genomes. Genome Res. 2002, 12:944-955.
-
(2002)
Genome Res.
, vol.12
, pp. 944-955
-
-
Zeeberg, B.1
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