메뉴 건너뛰기




Volumn 6, Issue 9, 2012, Pages 1629-1639

Microbial diversity in arctic freshwaters is structured by inoculation of microbes from soils

Author keywords

Archaea; Bacteria; Eukarya; landscape; metacommunity; MIRADA LTERS

Indexed keywords

FRESH WATER;

EID: 84865323947     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2012.9     Document Type: Article
Times cited : (264)

References (60)
  • 1
    • 45149092121 scopus 로고    scopus 로고
    • Are Archaea inherently less diverse than Bacteria in the same environments?
    • DOI 10.1111/j.1574-6941.2008.00498.x
    • Aller JY, Kemp PF. (2008). Are Archaea inherently less diverse than Bacteria in the same environments? FEMS Microbiol Ecol 65: 74-87. (Pubitemid 351832105)
    • (2008) FEMS Microbiology Ecology , vol.65 , Issue.1 , pp. 74-87
    • Aller, J.Y.1    Kemp, P.F.2
  • 2
    • 18044386748 scopus 로고    scopus 로고
    • The sea surface microlayer as a source of viral and bacterial enrichment in marine aerosols
    • DOI 10.1016/j.jaerosci.2004.10.012, Measurement and Characterization of Bioaerosols
    • Aller JY, Kuznetsova MR, Jahns CJ, Kemp PF. (2005). The sea surface microlayer as a source of viral and bacterial enrichment in marine aerosols. J Aerosol Sci 36: 801-812. (Pubitemid 40603593)
    • (2005) Journal of Aerosol Science , vol.36 , Issue.5-6 , pp. 801-812
    • Aller, J.Y.1    Kuznetsova, M.R.2    Jahns, C.J.3    Kemp, P.F.4
  • 3
    • 68149178616 scopus 로고    scopus 로고
    • A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes
    • Amaral-Zettler LA, McCliment EA, Ducklow HW, Huse SM. (2009). A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes. PLoS One 4: e6372.
    • (2009) PLoS One , vol.4
    • Amaral-Zettler, L.A.1    McCliment, E.A.2    Ducklow, H.W.3    Huse, S.M.4
  • 4
    • 42349111816 scopus 로고    scopus 로고
    • Improved methodology for identification of protists and microalgae from plankton samples preserved in Lugol's iodine solution: Combining microscopic analysis with single-cell PCR
    • DOI 10.1128/AEM.01803-07
    • Auinger BM, Pfandl K, Boenigk J. (2008). Improved methodology for identification of protists and micro-algae from plankton samples preserved in Lugol's iodine solution: Combining microscopic analysis with single-cell PCR. Appl Environ Microbiol 74: 2505-2510. (Pubitemid 351555464)
    • (2008) Applied and Environmental Microbiology , vol.74 , Issue.8 , pp. 2505-2510
    • Auinger, B.M.1    Pfandl, K.2    Boenigk, J.3
  • 5
    • 0034036918 scopus 로고    scopus 로고
    • Bacterioplankton production in humic Lake Ortrasket in relation to input of bacterial cells and input of allochthonous organic carbon
    • DOI 10.1007/s002480000007
    • Bergström AK, Jansson M. (2000). Bacterioplankton production in humic Lake Orträsket in relation to input of bacterial cells and input of allochthonous organic carbon. Microb Ecol 39: 101-115. (Pubitemid 30343236)
    • (2000) Microbial Ecology , vol.39 , Issue.2 , pp. 101-115
    • Bergstrom, A.-K.1    Jansson, M.2
  • 6
    • 84872944584 scopus 로고    scopus 로고
    • Estimating the number of species with CatchAll
    • Bunge J. (2011). Estimating the number of species with CatchAll. Proc Pac Symp Biocomput 16: 121-130.
    • (2011) Proc Pac Symp Biocomput , vol.16 , pp. 121-130
    • Bunge, J.1
  • 9
    • 0019755140 scopus 로고
    • Protozoan grazing of bacteria in soil - Impact and importance
    • DOI 10.1007/BF02341429
    • Clarholm M. (1981). Protozoan grazing of bacteria in soil-impact and importance. Microb Ecol 7: 343-350. (Pubitemid 13224938)
    • (1981) Microbial Ecology , vol.7 , Issue.4 , pp. 343-350
    • Clarholm, M.1
  • 10
    • 0027804103 scopus 로고
    • Non-parametric multivariate analyses of changes in community structure
    • Clarke KR. (1993). Nonparametric multivariate analyses of changes in community structure. Aust J Ecol 18: 117-143. (Pubitemid 24409223)
    • (1993) Australian Journal of Ecology , vol.18 , Issue.1 , pp. 117-143
    • Clarke, K.R.1
  • 11
    • 34547617665 scopus 로고    scopus 로고
    • Biogeography of bacterioplankton in lakes and streams of an arctic tundra catchment
    • DOI 10.1890/06-0387
    • Crump BC, Adams HE, Hobbie JE, Kling GW. (2007). Biogeography of bacterioplankton in lakes and streams of an arctic tundra catchment. Ecology 88: 1365-1378. (Pubitemid 351345212)
    • (2007) Ecology , vol.88 , Issue.6 , pp. 1365-1378
    • Crump, B.C.1    Adams, H.E.2    Hobbie, J.E.3    Kling, G.W.4
  • 12
    • 28044457197 scopus 로고    scopus 로고
    • Synchrony and seasonality in bacterioplankton communities of two temperate rivers
    • Crump BC, Hobbie JE. (2005). Synchrony and seasonality of bacterioplankton communities in two temperate rivers. Limnol Oceanogr 50: 1718-1729. (Pubitemid 41692181)
    • (2005) Limnology and Oceanography , vol.50 , Issue.6 , pp. 1718-1729
    • Crump, B.C.1    Hobbie, J.E.2
  • 13
    • 0242668350 scopus 로고    scopus 로고
    • Bacterioplankton community shifts in an Arctic lake correlate with seasonal changes in organic matter source
    • DOI 10.1128/AEM.69.4.2253-2268.2003
    • Crump BC, Kling GW, Bahr M, Hobbie JE. (2003). Bacterioplankton community shifts in an arctic lake correlate with seasonal changes in organic matter source. Appl Environ Microbiol 69: 2253-2268. (Pubitemid 36443645)
    • (2003) Applied and Environmental Microbiology , vol.69 , Issue.4 , pp. 2253-2268
    • Crump, B.C.1    Kling, G.W.2    Bahr, M.3    Hobbie, J.E.4
  • 16
    • 38449112550 scopus 로고    scopus 로고
    • Environmental controls on the landscape-scale biogeography of stream bacterial communities
    • DOI 10.1890/06-1746.1
    • Fierer N, Morse JL, Berthrong ST, Bernhardt ES, Jackson RB. (2007). Environmental controls on the landscape-scale biogeography of stream bacterial communities. Ecology 88: 2162-2173. (Pubitemid 351345126)
    • (2007) Ecology , vol.88 , Issue.9 , pp. 2162-2173
    • Fierer, N.1    Morse, J.L.2    Berthrong, S.T.3    Bernhardt, E.S.4    Jackson, R.B.5
  • 17
    • 77957258400 scopus 로고    scopus 로고
    • Changes through time: Integrating microorganisms into the study of succession
    • Fierer N, Nemergut D, Knight R, Craine JM. (2010). Changes through time: integrating microorganisms into the study of succession. Res Microbiol 161: 635-642.
    • (2010) Res Microbiol , vol.161 , pp. 635-642
    • Fierer, N.1    Nemergut, D.2    Knight, R.3    Craine, J.M.4
  • 20
    • 0034841101 scopus 로고    scopus 로고
    • Microhydrodynamics of flotation processes in the sea surface layer
    • DOI 10.1016/S0377-0265(01)00073-2, PII S0377026501000732, Mixing in Geophysical and Astrophysical Flows
    • Grammatika M, Zimmerman WB. (2001). Microhydrody-namics of flotation processes in the sea surface layer. Dyn Atmos Oceans 34: 327-348. (Pubitemid 32828120)
    • (2001) Dynamics of Atmospheres and Oceans , vol.34 , Issue.2-4 , pp. 327-348
    • Grammatika, M.1    Zimmerman, W.B.2
  • 21
    • 0021027608 scopus 로고
    • Seasonal patterns of bacterial abundance in an arctic lake
    • Hobbie JE, Corliss TL, Peterson BJ. (1983). Seasonal patterns of bacterial abundance in an arctic lake. Arctic Alpine Res 15: 253-259.
    • (1983) Arctic Alpine Res , vol.15 , pp. 253-259
    • Hobbie, J.E.1    Corliss, T.L.2    Peterson, B.J.3
  • 23
  • 25
    • 77955251092 scopus 로고    scopus 로고
    • Ironing out the wrinkles in the rare biosphere through improved OTU clustering
    • Huse SM, Welch DM, Morrison HG, Sogin ML. (2010). Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environ Microbiol 12: 1889-1898.
    • (2010) Environ Microbiol , vol.12 , pp. 1889-1898
    • Huse, S.M.1    Welch, D.M.2    Morrison, H.G.3    Sogin, M.L.4
  • 26
    • 77950526876 scopus 로고    scopus 로고
    • Dormancy contributes to the maintenance of microbial diversity
    • Jones SE, Lennon JT. (2010). Dormancy contributes to the maintenance of microbial diversity. Proc Natl Acad Sci USA 107: 5881-5886.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 5881-5886
    • Jones, S.E.1    Lennon, J.T.2
  • 27
    • 63849126616 scopus 로고    scopus 로고
    • Species-sorting may explain an apparent minimal effect of immigration on freshwater bacterial community dynamics
    • Jones SE, McMahon KD. (2009). Species-sorting may explain an apparent minimal effect of immigration on freshwater bacterial community dynamics. Environ Microbiol 11: 905-913.
    • (2009) Environ Microbiol , vol.11 , pp. 905-913
    • Jones, S.E.1    McMahon, K.D.2
  • 28
    • 33747046964 scopus 로고    scopus 로고
    • Variation in dissolved organic matter controls bacterial production and community composition
    • Judd KE, Crump BC, Kling GW. (2006). Variation in dissolved organic matter controls bacterial production and community composition. Ecology 87: 2068-2079. (Pubitemid 44215732)
    • (2006) Ecology , vol.87 , Issue.8 , pp. 2068-2079
    • Judd, K.E.1    Crump, B.C.2    Kling, G.W.3
  • 29
    • 33947230847 scopus 로고    scopus 로고
    • Bacterial responses in activity and community composition to photo-oxidation of dissolved organic matter from soil and surface waters
    • DOI 10.1007/s00027-006-0908-4
    • Judd KE, Crump BC, Kling GW. (2007). Bacterial responses in activity and community composition to photo-oxidation of dissolved organic matter from soil and surface waters. Aquat Sci 69: 96-107. (Pubitemid 46434809)
    • (2007) Aquatic Sciences , vol.69 , Issue.1 , pp. 96-107
    • Judd, K.E.1    Crump, B.C.2    Kling, G.W.3
  • 31
    • 33644631616 scopus 로고    scopus 로고
    • Temporal variation and detection limit of an estuarine bacterioplankton community analyzed by denaturing gradient gel electrophoresis (DGGE)
    • Kan JJ, Wang K, Chen F. (2006). Temporal variation and detection limit of an estuarine bacterioplankton community analyzed by denaturing gradient gel electrophoresis (DGGE). Aquat Microb Ecol 42: 7-18.
    • (2006) Aquat Microb Ecol , vol.42 , pp. 7-18
    • Kan, J.J.1    Wang, K.2    Chen, F.3
  • 32
    • 77953594953 scopus 로고    scopus 로고
    • The structure of bacterial communities in the western Arctic Ocean as revealed by pyrosequencing of 16S rRNA genes
    • Kirchman DL, Cottrell MT, Lovejoy C. (2010). The structure of bacterial communities in the western Arctic Ocean as revealed by pyrosequencing of 16S rRNA genes. Environ Microbiol 12: 1132-1143.
    • (2010) Environ Microbiol , vol.12 , pp. 1132-1143
    • Kirchman, D.L.1    Cottrell, M.T.2    Lovejoy, C.3
  • 33
    • 0034022034 scopus 로고    scopus 로고
    • Integration of lakes and streams in a landscape perspective: The importance of material processing on spatial patterns and temporal coherence
    • DOI 10.1046/j.1365-2427.2000.00515.x
    • Kling GW, Kipphut GW, Miller MC, O'Brien WJ. (2000). Integration of lakes and streams in a landscape perspective: the importance of material processing on spatial patterns and temporal coherence. Freshw Biol 43: 477-497. (Pubitemid 30165855)
    • (2000) Freshwater Biology , vol.43 , Issue.3 , pp. 477-497
    • Kling, G.W.1    Kipphut, G.W.2    Miller, M.M.3    O'Brien, W.J.4
  • 41
    • 58049095869 scopus 로고    scopus 로고
    • Phenology of high-elevation pelagic bacteria: The roles of meteorologic variability, catchment inputs and thermal stratification in structuring communities
    • Nelson CE. (2009). Phenology of high-elevation pelagic bacteria: the roles of meteorologic variability, catchment inputs and thermal stratification in structuring communities. ISME J 3: 13-30.
    • (2009) ISME J , vol.3 , pp. 13-30
    • Nelson, C.E.1
  • 43
    • 33744745905 scopus 로고    scopus 로고
    • Marine microbial diversity: can it be determined?
    • DOI 10.1016/j.tim.2006.04.007, PII S0966842X06000989
    • Pedros-Alio C. (2006). Marine microbial diversity: can it be determined? Trends Microbiol 14: 257-263. (Pubitemid 43825732)
    • (2006) Trends in Microbiology , vol.14 , Issue.6 , pp. 257-263
    • Pedros-Alio, C.1
  • 44
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig WG, Peplies J et al. (2007). SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35: 7188-7196.
    • (2007) Nucleic Acids Res , vol.35 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2    Knittel, K.3    Fuchs, B.M.4    Ludwig, W.G.5    Peplies, J.6
  • 47
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: Open-Source, platform-independent, community-supported software for describing and comparing microbial communities
    • Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB et al. (2009). Introducing mothur: Open-Source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 7537-7541
    • Schloss, P.D.1    Westcott, S.L.2    Ryabin, T.3    Hall, J.R.4    Hartmann, M.5    Hollister, E.B.6
  • 50
    • 33644843833 scopus 로고    scopus 로고
    • Quantifying the roles of immigration and chance in shaping prokaryote community structure
    • DOI 10.1111/j.1462-2920.2005.00956.x
    • Sloan WT, Lunn M, Woodcock S, Head IM, Nee S, Curtis TP. (2006). Quantifying the roles of immigration and chance in shaping prokaryote community structure. Environ Microbiol 8: 732-740. (Pubitemid 43363329)
    • (2006) Environmental Microbiology , vol.8 , Issue.4 , pp. 732-740
    • Sloan, W.T.1    Lunn, M.2    Woodcock, S.3    Head, I.M.4    Nee, S.5    Curtis, T.P.6
  • 53
    • 33646748900 scopus 로고    scopus 로고
    • Dispersal limitations matter for microbial morphospecies
    • Telford RJ, Vandvik V, Birks HJB. (2006). Dispersal limitations matter for microbial morphospecies. Science 312: 1015-1015.
    • (2006) Science , vol.312 , pp. 1015-1015
    • Telford, R.J.1    Vandvik, V.2    Birks, H.J.B.3
  • 55
    • 77954695132 scopus 로고    scopus 로고
    • Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil
    • Uroz S, Buee M, Murat C, Frey-Klett P, Martin F. (2010). Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil. Environ Microbiol Rep 2: 281-288.
    • (2010) Environ Microbiol Rep , vol.2 , pp. 281-288
    • Uroz, S.1    Buee, M.2    Murat, C.3    Frey-Klett, P.4    Martin, F.5
  • 56
    • 0000696608 scopus 로고
    • Nitrogen, phosphorus and organic carbon cycling in an arctic lake
    • Whalen SC, Cornwell JC. (1985). Nitrogen, phosphorus and organic carbon cycling in an arctic lake. Can J Fish Aquat Sci 42: 797-808.
    • (1985) Can J Fish Aquat Sci , vol.42 , pp. 797-808
    • Whalen, S.C.1    Cornwell, J.C.2
  • 57
    • 0027100116 scopus 로고
    • Complex interactions in metacommunities, with implications for biodiversity and higher levels of selection
    • Wilson DS. (1992). Complex interactions in meta-communities, with implications for biodiversity and higher levels of selection. Ecology 73: 1984-2000. (Pubitemid 23400157)
    • (1992) Ecology , vol.73 , Issue.6 , pp. 1984-2000
    • Wilson, D.S.1
  • 58
    • 0000752430 scopus 로고
    • Similarity indices, sample size and diversity
    • Wolda H. (1981). Similarity indices, sample size and diversity. Oecologia 50: 296-302.
    • (1981) Oecologia , vol.50 , pp. 296-302
    • Wolda, H.1
  • 59
    • 79955749319 scopus 로고    scopus 로고
    • Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
    • Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L et al. (2011). Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nat Biotech 29: 415-420.
    • (2011) Nat Biotech , vol.29 , pp. 415-420
    • Yilmaz, P.1    Kottmann, R.2    Field, D.3    Knight, R.4    Cole, J.R.5    Amaral-Zettler, L.6
  • 60
    • 13844317082 scopus 로고    scopus 로고
    • Mapping of picoeucaryotes in marine ecosystems with quantitative PCR of the 18S rRNA gene
    • DOI 10.1016/j.femsec.2004.10.006
    • Zhu F, Massana R, Not F, Marie D, Vaulot D. (2005). Mapping of picoeucaryotes in marine ecosystems with quantitative PCR of the 18S rRNA gene. FEMS Microbiol Ecol 52: 79-92. (Pubitemid 40261301)
    • (2005) FEMS Microbiology Ecology , vol.52 , Issue.1 , pp. 79-92
    • Zhu, F.1    Massana, R.2    Not, F.3    Marie, D.4    Vaulot, D.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.