-
2
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann RI, Ludwig W, Schleifer K (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59:143-169
-
(1995)
Microbiol Rev
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.3
-
3
-
-
0036151745
-
Phylogenetic composition of bacterioplankton assemblages from the Arctic Ocean
-
Bano N, Hollibaugh JT (2002) Phylogenetic composition of bacterioplankton assemblages from the Arctic Ocean. Appl Environ Microbiol 68:505-518
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 505-518
-
-
Bano, N.1
Hollibaugh, J.T.2
-
4
-
-
0034610218
-
Genetic diversity of total, active and culturable marine bacteria in costal seawater
-
Bernard L, Schaefer H, Joux F, Courties C, Muyzer G, Lebaron P (2000) Genetic diversity of total, active and culturable marine bacteria in costal seawater. Aquat Microb Ecol 23:1-11
-
(2000)
Aquat Microb Ecol
, vol.23
, pp. 1-11
-
-
Bernard, L.1
Schaefer, H.2
Joux, F.3
Courties, C.4
Muyzer, G.5
Lebaron, P.6
-
5
-
-
0028985734
-
Comparison of free-living and particle-associated bacterial communities in the Chesapeake Bay by stable low-molecular-weight RNA analysis
-
Bidle KD, Fletcher M (1995) Comparison of free-living and particle-associated bacterial communities in the Chesapeake Bay by stable low-molecular-weight RNA analysis. Appl Environ Microbiol 61:944-952
-
(1995)
Appl Environ Microbiol
, vol.61
, pp. 944-952
-
-
Bidle, K.D.1
Fletcher, M.2
-
6
-
-
0035022658
-
Chesapeake Bay eutrophication: Scientific understanding, ecosystem restoration, and challenges for agriculture
-
Boesch DF, Brinsfield RB, Magnien RE (2001) Chesapeake Bay eutrophication: scientific understanding, ecosystem restoration, and challenges for agriculture. J Environ Qual 30:303-320
-
(2001)
J Environ Qual
, vol.30
, pp. 303-320
-
-
Boesch, D.F.1
Brinsfield, R.B.2
Magnien, R.E.3
-
7
-
-
0036222111
-
Compositional changes in free-living bacterial communities along a salinity gradient in two temperate estuaries
-
Bouvier TC, del Giorgio PA (2002) Compositional changes in free-living bacterial communities along a salinity gradient in two temperate estuaries. Limnol Oceanogr 47:453-470
-
(2002)
Limnol Oceanogr
, vol.47
, pp. 453-470
-
-
Bouvier, T.C.1
Del Giorgio, P.A.2
-
8
-
-
17544390961
-
Identification of and spatio-temporal differences between microbial assemblages from two neighboring sulfurous lakes: Comparison by microscopy and denaturing gradient gel electrophoresis
-
Casamayor EO, Schafer H, Baneras L, Pedros-Alio C, Muyzer G (2000) Identification of and spatio-temporal differences between microbial assemblages from two neighboring sulfurous lakes: comparison by microscopy and denaturing gradient gel electrophoresis. Appl Environ Microbiol 66:499-508
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 499-508
-
-
Casamayor, E.O.1
Schafer, H.2
Baneras, L.3
Pedros-Alio, C.4
Muyzer, G.5
-
9
-
-
0035143656
-
Application of digital image analysis and flow cytometry to enumerate marine viruses stained with SYBR Gold
-
Chen F, Lu J, Binder BJ, Liu Y, Hodson RE (2001) Application of digital image analysis and flow cytometry to enumerate marine viruses stained with SYBR Gold. Appl Environ Microbiol 67:539-545
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 539-545
-
-
Chen, F.1
Lu, J.2
Binder, B.J.3
Liu, Y.4
Hodson, R.E.5
-
10
-
-
0034469143
-
Community composition of marine bacterioplankton determined by 16S rRNA gene clone libraries and fluorescence in situ hybridization
-
Cottrell MT, Kirchman DL (2000) Community composition of marine bacterioplankton determined by 16S rRNA gene clone libraries and fluorescence in situ hybridization. Appl Environ Microbiol 66:5116-5122
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 5116-5122
-
-
Cottrell, M.T.1
Kirchman, D.L.2
-
11
-
-
0037388225
-
Understanding bias in microbial community analysis techniques due to rrn operon copy number heterogeneity
-
Crosby LD, Criddle CS (2003) Understanding bias in microbial community analysis techniques due to rrn operon copy number heterogeneity. Biotechniques 34:790-802
-
(2003)
Biotechniques
, vol.34
, pp. 790-802
-
-
Crosby, L.D.1
Criddle, C.S.2
-
12
-
-
0032976388
-
Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia River, its estuary, and the adjacent coastal ocean
-
Crump BC, Armbrust EV, Baross JA (1999) Phylogenetic analysis of particle-attached and free-living bacterial communities in the Columbia River, its estuary, and the adjacent coastal ocean. Appl Environ Microbiol 65:3192-3204
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 3192-3204
-
-
Crump, B.C.1
Armbrust, E.V.2
Baross, J.A.3
-
13
-
-
0242668350
-
Bacterioplankton community shifts in an Arctic lake correlate with seasonal changes in organic matter source
-
Crump BC, Kling GW, Bahr M, Hobbie JE (2003) Bacterioplankton community shifts in an Arctic lake correlate with seasonal changes in organic matter source. Appl Environ Microbiol 69:2253-2268
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 2253-2268
-
-
Crump, B.C.1
Kling, G.W.2
Bahr, M.3
Hobbie, J.E.4
-
14
-
-
1642376424
-
Microbial biogeography along an estuarine salinity gradient: Combined influences of bacterial growth and residence time
-
Crump BC, Hopkinson CS, Sogin ML, Hobbie JE (2004) Microbial biogeography along an estuarine salinity gradient: combined influences of bacterial growth and residence time. Appl Environ Microbiol 70:1494-1505
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 1494-1505
-
-
Crump, B.C.1
Hopkinson, C.S.2
Sogin, M.L.3
Hobbie, J.E.4
-
15
-
-
0029032318
-
Effects of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species
-
Farrelly V, Rainey FA, Stachebrandt E (1995) Effects of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species. Appl Environ Microbiol 61:2798-2801
-
(1995)
Appl Environ Microbiol
, vol.61
, pp. 2798-2801
-
-
Farrelly, V.1
Rainey, F.A.2
Stachebrandt, E.3
-
16
-
-
0030063913
-
Denaturing Gradient Gel Electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community
-
Ferris MJ, Muyzer G, Ward DM (1996) Denaturing Gradient Gel Electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community. Appl Environ Microbiol 62:340-346
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 340-346
-
-
Ferris, M.J.1
Muyzer, G.2
Ward, D.M.3
-
17
-
-
0000262823
-
Evolution, diversity, and molecularecology of marine prokaryotes
-
Kirchman DL (ed) Wiley-Liss, New York
-
Giovannoni SJ, Rappé MS (2000) Evolution, diversity, and molecularecology of marine prokaryotes. In: Kirchman DL (ed) Microbial ecology of the oceans. Wiley-Liss, New York, p 47-84
-
(2000)
Microbial Ecology of the Oceans
, pp. 47-84
-
-
Giovannoni, S.J.1
Rappé, M.S.2
-
18
-
-
17644439150
-
Bacterioplankton compositions of lakes and oceans: A first comparison based on fluorescence in situ hybridization
-
Glöckner FO, Fuchs BM, Amann R (1999) Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization. Appl Environ Microbiol 65:3721-3726
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 3721-3726
-
-
Glöckner, F.O.1
Fuchs, B.M.2
Amann, R.3
-
19
-
-
0342940789
-
Numerical dominance of a group of marine bacteria in the α-subclass of the class Proteobacteria in coastal seawater
-
Gonzalez JM, Moran MA (1997) Numerical dominance of a group of marine bacteria in the α-subclass of the class Proteobacteria in coastal seawater. Appl Environ Microbiol 63:4237-4242
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 4237-4242
-
-
Gonzalez, J.M.1
Moran, M.A.2
-
21
-
-
0345104351
-
Seasonal dynamics of bacterioplankton community structure in a eutrophic lake as determined by 5S rRNA analysis
-
Höfle MG, Haas H, Dominik K (1999) Seasonal dynamics of bacterioplankton community structure in a eutrophic lake as determined by 5S rRNA analysis. Appl Environ Microbiol 65:3164-3174
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 3164-3174
-
-
Höfle, M.G.1
Haas, H.2
Dominik, K.3
-
22
-
-
0000732090
-
Evolution of protein molecules
-
Munro HN (ed) Academic Press, New York
-
Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Munro HN (ed) Mammalian protein metabolism. Academic Press, New York, p 21-132
-
(1969)
Mammalian Protein Metabolism
, pp. 21-132
-
-
Jukes, T.H.1
Cantor, C.R.2
-
23
-
-
8644242946
-
Co-monitoring bacterial and dinoflagellates communities by denaturing gradient gel electrophoresis (DGGE) and SSU rDNA sequencing during a dinoflagellate bloom
-
Kan J, Chen F (2004) Co-monitoring bacterial and dinoflagellates communities by denaturing gradient gel electrophoresis (DGGE) and SSU rDNA sequencing during a dinoflagellate bloom. Acta Oceanol Sin 23:483-492
-
(2004)
Acta Oceanol Sin
, vol.23
, pp. 483-492
-
-
Kan, J.1
Chen, F.2
-
24
-
-
14944347602
-
Annual patterns in bacterioplankton community variability in a humic lake
-
Kent AD, Jones SE, Yannarell AC, Graham JM, Lauster GH, Kratz TK, Triplett EW (2004) Annual patterns in bacterioplankton community variability in a humic lake. Microb Ecol 48:550-560
-
(2004)
Microb Ecol
, vol.48
, pp. 550-560
-
-
Kent, A.D.1
Jones, S.E.2
Yannarell, A.C.3
Graham, J.M.4
Lauster, G.H.5
Kratz, T.K.6
Triplett, E.W.7
-
25
-
-
0242573334
-
Diversity and abundance of uncultured Cytophaga-like bacteria in the Delaware estuary
-
Kirchman DL, Yu L, Cottrell MT (2003) Diversity and abundance of uncultured Cytophaga-like bacteria in the Delaware estuary. Appl Environ Microbiol 69:6587-6596
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 6587-6596
-
-
Kirchman, D.L.1
Yu, L.2
Cottrell, M.T.3
-
26
-
-
0038654457
-
Combining culture-dependent and -independent methodologies for estimation of richness of estuarine bacterioplankton consuming riverine dissolved organic matter
-
Kisand V, Wikner J (2003) Combining culture-dependent and -independent methodologies for estimation of richness of estuarine bacterioplankton consuming riverine dissolved organic matter. Appl Environ Microbiol 69:3607-3616
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 3607-3616
-
-
Kisand, V.1
Wikner, J.2
-
28
-
-
0026379756
-
Spatial and temporal variation of natural bacterioplankton assemblages studied by total genomic DNA cross-hybridization
-
Lee S, Fuhrman JA (1991) Spatial and temporal variation of natural bacterioplankton assemblages studied by total genomic DNA cross-hybridization. Limnol Oceanogr 36:1277-1287
-
(1991)
Limnol Oceanogr
, vol.36
, pp. 1277-1287
-
-
Lee, S.1
Fuhrman, J.A.2
-
29
-
-
0031838852
-
Contrasts between marine and fresh water bacterial community composition: Analyses of communities in Lake George and six other Adirondack lakes
-
Methe BA, Hiorns WD, Zehr JP (1998) Contrasts between marine and fresh water bacterial community composition: analyses of communities in Lake George and six other Adirondack lakes. Limnol Oceanogr 43:368-374
-
(1998)
Limnol Oceanogr
, vol.43
, pp. 368-374
-
-
Methe, B.A.1
Hiorns, W.D.2
Zehr, J.P.3
-
30
-
-
0030036446
-
Phylogenetic compositions of bacterioplankton from two California estuaries compared by denaturing gradient gel electrophoresis of 16S rDNA fragments
-
Murray AE, Hollibaugh JT, Orrego C (1996) Phylogenetic compositions of bacterioplankton from two California estuaries compared by denaturing gradient gel electrophoresis of 16S rDNA fragments. Appl Environ Microbiol 62:2676-2680
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 2676-2680
-
-
Murray, A.E.1
Hollibaugh, J.T.2
Orrego, C.3
-
31
-
-
0031814110
-
Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters near Anvers Island, Antarctica
-
Murray AE, Preston CM, Massana R, Taylor LT, Blakis A, Wu K, DeLong EF (1998) Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters near Anvers Island, Antarctica. Appl Environ Microbiol 64:2585-2595
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 2585-2595
-
-
Murray, A.E.1
Preston, C.M.2
Massana, R.3
Taylor, L.T.4
Blakis, A.5
Wu, K.6
DeLong, E.F.7
-
32
-
-
0027460328
-
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
-
Muyzer G, de Waal E, Uitterlinden A (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59:695-700
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 695-700
-
-
Muyzer, G.1
De Waal, E.2
Uitterlinden, A.3
-
33
-
-
0347760429
-
Analysis of dissimilatory sulfite reductase and 16S rRNA gene fragments from deep-sea hydrothermal sites of the Suiyo Seamount, Izu-Boniin Arc, Western Pacific
-
Nakagawa T, Ishibashi J, Maruyama A, Yamanaka T, Morimoto Y, Kimura H, Urabe T, Fukui M (2004) Analysis of dissimilatory sulfite reductase and 16S rRNA gene fragments from deep-sea hydrothermal sites of the Suiyo Seamount, Izu-Boniin Arc, Western Pacific. Appl Environ Microbiol 70:393-403
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 393-403
-
-
Nakagawa, T.1
Ishibashi, J.2
Maruyama, A.3
Yamanaka, T.4
Morimoto, Y.5
Kimura, H.6
Urabe, T.7
Fukui, M.8
-
34
-
-
0030613389
-
Natural microbial community compositions compared by a back-propagating neural network and cluster analysis of 5S rRNA
-
Noble PA, Bidle KD, Fletcher M (1997) Natural microbial community compositions compared by a back-propagating neural network and cluster analysis of 5S rRNA. Appl Environ Microbiol 63:1762-1770
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 1762-1770
-
-
Noble, P.A.1
Bidle, K.D.2
Fletcher, M.3
-
35
-
-
0030805150
-
Distribution of bacterioplankton in meromictic Lake Saelenvannet, as determined by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA
-
Ovreas L, Forney L, Daae FL, Torsvik V (1997) Distribution of bacterioplankton in meromictic Lake Saelenvannet, as determined by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA. Appl Environ Microbiol 63:3367-3373
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 3367-3373
-
-
Ovreas, L.1
Forney, L.2
Daae, F.L.3
Torsvik, V.4
-
36
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
37
-
-
0025860931
-
Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing
-
Schmidt TM, Delong EF, Pace NR (1991) Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. J Bacteriol 173:4371-4378
-
(1991)
J Bacteriol
, vol.173
, pp. 4371-4378
-
-
Schmidt, T.M.1
Delong, E.F.2
Pace, N.R.3
-
38
-
-
0035959664
-
Excessive nutrients select for dinoflagellates in the stratified Patapsco River estuary: Margalef reigns
-
Sellner KG, Sellner SG, Lacouture RV, Magnien RE (2001) Excessive nutrients select for dinoflagellates in the stratified Patapsco River estuary: Margalef reigns. Mar Eco Prog Ser 220:93-102
-
(2001)
Mar Eco Prog Ser
, vol.220
, pp. 93-102
-
-
Sellner, K.G.1
Sellner, S.G.2
Lacouture, R.V.3
Magnien, R.E.4
-
39
-
-
0020696808
-
Taxonomy (and ecology) of Flavobacterium and related genera
-
Shewan JM, McMeekin TA (1983) Taxonomy (and ecology) of Flavobacterium and related genera. Annu Rev Microbiol 37:233-252
-
(1983)
Annu Rev Microbiol
, vol.37
, pp. 233-252
-
-
Shewan, J.M.1
McMeekin, T.A.2
-
40
-
-
0032825173
-
Spatial heterogeneity of bacterial populations along an environmental gradient at a shallow submarine hydrothermal vent near Milos Island (Greece)
-
Sievert SM, Brinkhoff T, Muyzer G, Ziebis W, Kuever J (1999) Spatial heterogeneity of bacterial populations along an environmental gradient at a shallow submarine hydrothermal vent near Milos Island (Greece). Appl Environ Microbiol 65:3834-3842
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 3834-3842
-
-
Sievert, S.M.1
Brinkhoff, T.2
Muyzer, G.3
Ziebis, W.4
Kuever, J.5
-
42
-
-
0029668902
-
Impact of a genetically engineered bacterium with enhanced alkaline phosphatase activity on marine phytoplankton communities
-
Sobecky PA, Schell MA, Moran MA, Hodson RE (1996) Impact of a genetically engineered bacterium with enhanced alkaline phosphatase activity on marine phytoplankton communities. Appl Environ Microbiol 62:6-12
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 6-12
-
-
Sobecky, P.A.1
Schell, M.A.2
Moran, M.A.3
Hodson, R.E.4
-
43
-
-
0030067991
-
Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
-
Suzuki MT, Giovannoni SJ (1996) Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl Environ Microbiol 62:625-630
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 625-630
-
-
Suzuki, M.T.1
Giovannoni, S.J.2
-
44
-
-
0031035973
-
Bacterial diversity among small-subunit rRNA gene clones and cellular isolates from the same seawater sample
-
Suzuki MT, Rappé MS, Haimberger ZW, Winfield H, Adair N, Strobel J, Giovannoni SJ (1997) Bacterial diversity among small-subunit rRNA gene clones and cellular isolates from the same seawater sample. Appl Environ Microbiol 63:983-989
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 983-989
-
-
Suzuki, M.T.1
Rappé, M.S.2
Haimberger, Z.W.3
Winfield, H.4
Adair, N.5
Strobel, J.6
Giovannoni, S.J.7
-
45
-
-
0345195995
-
Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis
-
von Wintzingerode F, Gobel UB, Stachebrandt E (1997) Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol Rev 21:213-229
-
(1997)
FEMS Microbiol Rev
, vol.21
, pp. 213-229
-
-
Von Wintzingerode, F.1
Gobel, U.B.2
Stachebrandt, E.3
-
46
-
-
4143150674
-
Genetic diversity and population dynamics of cyanophage communities in the Chesapeake Bay
-
Wang K, Chen F (2004) Genetic diversity and population dynamics of cyanophage communities in the Chesapeake Bay. Aquat Microb Ecol 34:105-116
-
(2004)
Aquat Microb Ecol
, vol.34
, pp. 105-116
-
-
Wang, K.1
Chen, F.2
-
47
-
-
0347949986
-
Temporal patterns in bacterial communities in three temperate lakes of different trophic status
-
Yannarell AC, Kent AD, Lauster GH, Kratz TK, Triplett EW (2003) Temporal patterns in bacterial communities in three temperate lakes of different trophic status. Microb Ecol 46:391-405
-
(2003)
Microb Ecol
, vol.46
, pp. 391-405
-
-
Yannarell, A.C.1
Kent, A.D.2
Lauster, G.H.3
Kratz, T.K.4
Triplett, E.W.5
-
48
-
-
4143101632
-
Comparisons of different hypervariable regions of rrs genes for use in fingerprinting of microbial communities by PCR-denaturing gradient gel electrophoresis
-
Yu Z, Morrison M (2004) Comparisons of different hypervariable regions of rrs genes for use in fingerprinting of microbial communities by PCR-denaturing gradient gel electrophoresis. Appl Environ Microbiol 70:4800-4806
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 4800-4806
-
-
Yu, Z.1
Morrison, M.2
-
49
-
-
0037178021
-
Typical freshwater bacteria: An analysis of available 16S rRNA gene seguences from plankton of lakes and rivers
-
Zwart G, Crump BC, Kamst-van Agterveld MP, Hagen F, Han S (2002) Typical freshwater bacteria: an analysis of available 16S rRNA gene seguences from plankton of lakes and rivers. Aquat Microb Ecol 28:141-155
-
(2002)
Aquat Microb Ecol
, vol.28
, pp. 141-155
-
-
Zwart, G.1
Crump, B.C.2
Kamst-van Agterveld, M.P.3
Hagen, F.4
Han, S.5
|