Characterization of a novel variant of Mycobacterium chimaera

Journal of Medical Microbiology

Volumn 61, Issue PART 9, 2012, Pages 1234-1239

  van Ingen, J ^a   Hoefsloot, W ^a   Buijtels, P C A M ^b   Tortoli, E ^c   Supply, P ^d,e   Dekhuijzen, P N R ^a   Boeree, M J ^a   van Soolingen, D ^a,f  

^a RADBOUD UNIVERSITY MEDICAL CENTER   (Netherlands)

^b MEANDER MEDICAL CENTER   (Netherlands)

^c SAN RAFFAELE HOSPITAL   (Italy)

^d INSERM U1019   (France)

^e UNIV LILLE   (France)

^f NATIONAL INSTITUTE FOR PUBLIC HEALTH AND THE ENVIRONMENT   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

HEAT SHOCK PROTEIN 65; MYCOLIC ACID; RNA POLYMERASE BETA SUBUNIT;

AGED; ARTICLE; BACTERIUM ISOLATION; CASE REPORT; CHRONIC LUNG DISEASE; FEMALE; GENE SEQUENCE; GENETIC VARIABILITY; GENOTYPE; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; HUMAN; MALE; MYCOBACTERIUM; MYCOBACTERIUM AVIUM; MYCOBACTERIUM CHIMAERA; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PRIORITY JOURNAL;

AGED; AGED, 80 AND OVER; BACTERIAL TYPING TECHNIQUES; CHRONIC DISEASE; DNA, BACTERIAL; DNA, RIBOSOMAL SPACER; FEMALE; GENES, RRNA; GENETIC VARIATION; HUMANS; LUNG DISEASES; MALE; MOLECULAR SEQUENCE DATA; MYCOBACTERIUM AVIUM COMPLEX; MYCOBACTERIUM AVIUM-INTRACELLULARE INFECTION; NETHERLANDS; RNA, RIBOSOMAL, 16S; RNA, RIBOSOMAL, 23S; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

EID: 84865162509     PISSN: 00222615     EISSN: None     Source Type: Journal    
DOI: 10.1099/jmm.0.045070-0     Document Type: Article

References (25)

1. Adékambi, T., Berger, P., Raoult, D. & Drancourt, M. (2006). rpoB gene sequence-based characterization of emerging non-tuberculous mycobacteria with descriptions of Mycobacterium bolletii sp. nov., Mycobacterium phocaicum sp. nov. and Mycobacterium aubagnense sp. nov. Int J Syst Evol Microbiol 56, 133-143.
2. Ben Salah, I., Adékambi, T., Raoult, D. & Drancourt, M. (2008). rpoB sequence-based identification of Mycobacterium avium complex species. Microbiology 154, 3715-3723.
3. Ben Salah, I., Cayrou, C., Raoult, D. & Drancourt, M. (2009). Mycobacterium marseillense sp. nov., Mycobacterium timonense sp. nov. and Mycobacterium bouchedurhonense sp. nov., members of the Mycobacterium avium complex. Int J Syst Evol Microbiol 59, 2803-2808. CDC (1996). Standardized method for HPLC identification of mycobacteria. Atlanta, GA: US Department of Health and Human Services, Public Health Service.
4. CDC (1996). Standardized method for HPLC identification of mycobacteria. Atlanta, GA: US Department of Health and Human Services, Public Health Service.
5. Frothingham, R. & Wilson, K. H. (1993). Sequence-based differentiation of strains in the Mycobacterium avium complex. J Bacteriol 175, 2818-2825.
6. Griffith, D. E., Aksamit, T., Brown-Elliott, B. A., Catanzaro, A., Daley, C., Gordin, F., Holland, S. M., Horsburgh, R., Huitt, G. & other authors (2007). An official ATS/IDSA statement: diagnosis, treatment, and prevention of nontuberculous mycobacterial diseases. Am J Respir Crit Care Med 175, 367-416.
7. Hamid, M. E., Roth, A., Landt, O., Kroppenstedt, R. M., Goodfellow, M. & Mauch, H. (2002). Differentiation between Mycobacterium farcinogenes and Mycobacterium senegalense strains based on 16S-23S ribosomal DNA internal transcribed spacer sequences. J Clin Microbiol 40, 707-711.
8. Huson, D. H. & Bryant, D. (2006). Application of phylogenetic networks in evolutionary studies. Mol Biol Evol 23, 254-267.
9. Kent, P. T. & Kubica, G. P. (1985). Public Health Mycobacteriology. A Guide for the Level III Laboratory. Atlanta, GA: US Department of Health and Human Services.
10. Lebrun, L., Weill, F. X., Lafendi, L., Houriez, F., Casanova, F., Gutierrez, M. C., Ingrand, D., Lagrange, P., Vincent, V. & Herrmann, J. L. (2005). Use of the INNO-LiPA-MYCOBACTERIA assay (version 2) for identification of Mycobacterium avium-Mycobacterium intracellulare-Mycobacterium scrofulaceum complex isolates. J Clin Microbiol 43, 2567-2574.
11. Murcia, M. I., Tortoli, E., Menendez, M. C., Palenque, E. & Garcia, M. J. (2006). Mycobacterium colombiense sp. nov., a novel member of the Mycobacterium avium complex and description of MAC-X as a new ITS genetic variant. Int J Syst Evol Microbiol 56, 2049-2054.
12. Park, J. H., Shim, T. S., Lee, S. A., Lee, H., Lee, I. K., Kim, K., Kook, Y. H. & Kim, B. J. (2010). Molecular characterization of Mycobacterium intracellulare-related strains based on the sequence analysis of hsp65, internal transcribed spacer and 16S rRNA genes. J Med Microbiol 59, 1037-1043.
13. Roth, A., Fischer, M., Hamid, M. E., Michalke, S., Ludwig, W. & Mauch, H. (1998). Differentiation of phylogenetically related slowly growing mycobacteria based on 16S-23S rRNA gene internal transcribed spacer sequences. J Clin Microbiol 36, 139-147.
14. Schweickert, B., Goldenberg, O., Richter, E., Göbel, U. B., Petrich, A., Buchholz, P. & Moter, A. (2008). Occurrence and clinical relevance of Mycobacterium chimaera sp. nov., Germany. Emerg Infect Dis 14, 1443-1446.
15. Springer, B., Stockman, L., Teschner, K., Roberts, G. D. & Böttger, E. C. (1996). Two-laboratory collaborative study on identification of mycobacteria: molecular versus phenotypic methods. J Clin Microbiol 34, 296-303.
16. Stackebrandt, E., Frederiksen, W., Garrity, G. M., Grimont, P. A., Kämpfer, P., Maiden, M. C., Nesme, X., Rosselló-Mora, R., Swings, J. & other authors (2002). Report of the ad hoc committee for the reevaluation of the species definition in bacteriology. Int J Syst Evol Microbiol 52, 1043-1047.
17. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
18. Telenti, A., Marchesi, F., Balz, M., Bally, F., Böttger, E. C. & Bodmer, T. (1993). Rapid identification of mycobacteria to the species level by polymerase chain reaction and restriction enzyme analysis. J Clin Microbiol 31, 175-178.
19. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
20. Tortoli, E., Rindi, L., Garcia, M. J., Chiaradonna, P., Dei, R., Garzelli, C., Kroppenstedt, R. M., Lari, N., Mattei, R. & other authors (2004). Proposal to elevate the genetic variant MAC-A, included in the Mycobacterium avium complex, to species rank as Mycobacterium chimaera sp. nov. Int J Syst Evol Microbiol 54, 1277-1285.
21. Turenne, C. Y., Collins, D. M., Alexander, D. C. & Behr, M. A. (2008). Mycobacterium avium subsp. paratuberculosis and M. avium subsp. avium are independently evolved pathogenic clones of a much broader group of M. avium organisms. J Bacteriol 190, 2479-2487.
22. van Ingen, J., Boeree, M. J., Kösters, K., Wieland, A., Tortoli, E., Dekhuijzen, P. N. R. & van Soolingen, D. (2009a). Proposal to elevate Mycobacterium avium complex ITS sequevar MAC-Q to Mycobacterium vulneris sp. nov. Int J Syst Evol Microbiol 59, 2277-2282.
23. van Ingen, J., Bendien, S. A., de Lange, W. C. M., Hoefsloot, W., Dekhuijzen, P. N. R., Boeree, M. J. & van Soolingen, D. (2009b). Clinical relevance of non-tuberculous mycobacteria isolated in the Nijmegen-Arnhem region, The Netherlands. Thorax 64, 502-506.
24. van Ingen, J., van der Laan, T., Dekhuijzen, R., Boeree, M. J. & van Soolingen, D. (2010). In vitro drug susceptibility of 2275 clinical nontuberculous Mycobacterium isolates of 49 species in The Netherlands. Int J Antimicrob Agents 35, 169-173.
25. Zelazny, A. M., Root, J. M., Shea, Y. R., Colombo, R. E., Shamputa, I. C., Stock, F., Conlan, S., McNulty, S., Brown-Elliott, B. A. & other authors (2009). Cohort study of molecular identification and typing of Mycobacterium abscessus, Mycobacterium massiliense, and Mycobacterium bolletii. J Clin Microbiol 47, 1985-1995.