Molecular characterization of Mycobacterium intracellulare-related strains based on the sequence analysis of hsp65, internal transcribed spacer and 16S rRNA genes

Journal of Medical Microbiology

Volumn 59, Issue 9, 2010, Pages 1037-1043

  Park, Joo Hee ^a   Shim, Tae Sun ^b   Lee, Seung Ae ^a   Lee, Hyungki ^a   Lee, In Kyung ^a   Kim, Kijeong ^c   Kook, Yoon Hoh ^a   Kim, Bum Joon ^a  

^a Seoul National University College of Medicine   (South Korea)

^b University of Ulsan College of Medicine   (South Korea)

^c Chung Ang University College of Medicine   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

HEAT SHOCK PROTEIN 65; INTERNAL TRANSCRIBED SPACER 1; RNA 16S;

ADULT; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; FEMALE; GENE FREQUENCY; GENETIC ANALYSIS; GENOTYPE; HUMAN; KOREA; LUNG CAVITY; LUNG DISEASE; MAJOR CLINICAL STUDY; MALE; MYCOBACTERIUM INTRACELLULARE AVIUM; PRIORITY JOURNAL; RADIOLOGICAL PARAMETERS; SEQUENCE ANALYSIS;

AGED; DNA, RIBOSOMAL SPACER; FEMALE; GENOTYPE; HEAT-SHOCK PROTEINS; HUMANS; KOREA; MALE; MIDDLE AGED; MYCOBACTERIUM AVIUM COMPLEX; MYCOBACTERIUM AVIUM-INTRACELLULARE INFECTION; PHYLOGENY; RNA, RIBOSOMAL, 16S;

EID: 77956510063     PISSN: 00222615     EISSN: None     Source Type: Journal    
DOI: 10.1099/jmm.0.020727-0     Document Type: Article

References (28)

1. Alvarez, J., García, I. G., Aranaz, A., Bezos, J., Romero, B., de Juan, L., Mateos, A., Gómez-Mampaso, E. & Domínguez, L. (2008). Genetic diversity of Mycobacterium avium isolates recovered from clinical samples and from the environment: molecular characterization for diagnostic purposes. J Clin Microbiol 46, 1246-1251. (Pubitemid 351563563)
2. Bai, G. H., Park, K. S. & Kim, S. J. (1993). Clinically isolated mycobacteria other than Mycobacterium tuberculosis from 1980 to 1990 in Korea. J Korean Soc Microbiol 28, 1-5.
3. Bang, D., Herlin, T., Stegger, M., Andersen, A. B., Torkko, P., Tortoli, E. & Thomsen, V. O. (2008). Mycobacterium arosiense sp. nov., a slowly growing, scotochromogenic species causing osteomyelitis in an immunocompromised child. Int J Syst Evol Microbiol 58, 2398-2402.
4. Ben Salah, I., Cayrou, C., Raoult, D. & Drancourt, M. (2009). Mycobacterium marseillense sp. nov., Mycobacterium timonense sp. nov. and Mycobacterium bouchedurhonense sp. nov., members of the Mycobacterium avium complex. Int J Syst Evol Microbiol 59, 2803-2808.
5. Böddinghaus, B., Wolters, J., Heikens, W. & Böttger, E. C. (1990). Phylogenetic analysis and identification of different serovars of Mycobacterium intracellulare at the molecular level. FEMS Microbiol Lett 58, 197-203.
6. Falkinham, J. O. (1996). Epidemiology of nontuberculous mycobacteria. Clin Microbiol Rev 9, 177-215.
7. Frothingham, R. & Wilson, K. H. (1993). Sequence-based differentiation of strains in the Mycobacterium avium complex. J Bacteriol 175, 2818-2825. (Pubitemid 23148711)
8. Griffith, D. E., Aksamit, T., Brown-Elliott, B. A., Catanzaro, A., Daley, C., Gordin, F., Holland, S. M., Horsburgh, R., Huitt, G. & other authors (2007). An official ATS/IDSA statement: diagnosis, treatment, and prevention of nontuberculous mycobacterial diseases. Am J Respir Crit Care Med 175, 367-416.
9. Han, X. Y., Tarrand, J. J., Infante, R., Jacobson, K. L. & Truong, M. (2005). Clinical significance and epidemiologic analyses of Mycobacterium avium and Mycobacterium intracellulare among patients without AIDS. J Clin Microbiol 43, 4407-4412. (Pubitemid 41298220)
10. Inderlied, C. B., Kemper, C. A. & Bermudez, L. E. (1993). The Mycobacterium avium complex. Clin Microbiol Rev 6, 266-310.
11. Kim, H., Kim, S. H., Shim, T. S., Kim, M. N., Bai, G. H., Park, Y. G., Lee, S. H., Cha, C. Y., Kook, Y. H. & Kim, B. J. (2005). PCR restriction fragment length polymorphism analysis (PRA)-algorithm targeting 644 bp heat shock protein 65 (hsp65) gene for differentiation of Mycobacterium spp. J Microbiol Methods 62, 199-209. (Pubitemid 40991439)
12. Kim, H. J., Mun, H. S., Kim, H., Oh, E. J., Ha, Y., Bai, G. H., Park, Y. G., Cha, C. Y., Kook, Y. H. & Kim, B. J. (2006). Differentiation of mycobacterial species by hsp65 duplex PCR followed by duplex-PCR-based restriction analysis and direct sequencing. J Clin Microbiol 44, 3855-3862. (Pubitemid 44737219)
13. Koh, W. J., Kwon, O. J. & Lee, K. S. (2005). Diagnosis and treatment of nontuberculous mycobacterial pulmonary diseases: a Korean perspective. J Korean Med Sci 20, 913-925.
14. Koh, W. J., Kwon, O. J., Jeon, K., Kim, T. S., Lee, K. S., Park, Y. K. & Bai, G. H. (2006). Clinical significance of nontuberculous mycobacteria isolated from respiratory specimens in Korea. Chest 129, 341-348. (Pubitemid 43289853)
15. Kumar, S., Dudley, J., Nei, M. & Tamura, K. (2008). MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform 9, 299-306. (Pubitemid 351890826)
16. Lee, H., Park, H. J., Cho, S. N., Bai, G. H. & Kim, S. J. (2000). Species identification of mycobacteria by PCR-restriction fragment length polymorphism of the rpoB gene. J Clin Microbiol 38, 2966-2971. (Pubitemid 30640582)
17. Mijs, W., de Haas, P., Rossau, R., Van der Laan, T., Rigouts, L., Portaels, F. & van Soolingen, D. (2002). Molecular evidence to support a proposal to reserve the designation Mycobacterium avium subsp. avium for bird-type isolates and 'M. avium subsp. hominissuis' for the human/porcine type of M. avium. Int J Syst Evol Microbiol 52, 1505-1518.
18. Mun, H. S., Kim, H. J., Oh, E. J., Kim, H., Park, Y. G., Bai, G. H., Do, J., Cha, C. Y., Kook, Y. H. & Kim, B. J. (2007). Direct application of AvaII PCR restriction fragment length polymorphism analysis (AvaII PRA) targeting 644 bp heat shock protein 65 (hsp65) gene to sputum samples. Microbiol Immunol 51, 105-110. (Pubitemid 46155192)
19. Murcia, M. I., Tortoli, E., Menendez, M. C., Palenque, E. & Garcia, M. J. (2006). Mycobacterium colombiense sp. nov., a novel member of the Mycobacterium avium complex and description of MAC-X as a new ITS genetic variant. Int J Syst Evol Microbiol 56, 2049-2054. (Pubitemid 44446382)
20. Ryoo, S. W., Shin, S., Shim, M. S., Park, Y. S., Lew, W. J., Park, S. N., Park, Y. K. & Kang, S. (2008). Spread of nontuberculous mycobacteria from 1993 to 2006 in Koreans. J Clin Lab Anal 22, 415-420.
21. Schweickert, B., Goldenberg, O., Richter, E., Göbel, U. B., Petrich, A., Buchholz, P. & Moter, A. (2008). Occurrence and clinical relevance of Mycobacterium chimaera sp. nov., Germany. Emerg Infect Dis 14, 1443-1446.
22. Semret, M., Turenne, C. Y., de Haas, P., Collins, D. M. & Behr, M. A. (2006). Differentiating host-associated variants of Mycobacterium avium by PCR for detection of large sequence polymorphisms. J Clin Microbiol 44, 881-887.
23. Stout, J. E., Hopkins, G. W., McDonald, J. R., Quinn, A., Hamilton, C. D., Reller, L. B. & Frothingham, R. (2008). Association between 16S-23S internal transcribed spacer sequence groups of Mycobacterium avium complex and pulmonary disease. J Clin Microbiol 46, 2790-2793.
24. Tortoli, E., Rindi, L., Garcia, M. J., Chiaradonna, P., Dei, R., Garzelli, C., Kroppenstedt, R. M., Lari, N., Mattei, R. & other authors (2004). Proposal to elevate the genetic variant MAC-A, included in the Mycobacterium avium complex, to species rank as Mycobacterium chimaera sp. nov. Int J Syst Evol Microbiol 54, 1277-1285.
25. Turenne, C. Y., Semret, M., Cousins, D. V., Collins, D. M. & Behr, M. A. (2006). Sequencing of hsp65 distinguishes among subsets of the Mycobacterium avium complex. J Clin Microbiol 44, 433-440. (Pubitemid 43222235)
26. Turenne, C. Y., Wallace, R., Jr & Behr, M. A. (2007). Mycobacterium avium in the postgenomic era. Clin Microbiol Rev 20, 205-229.
27. Turenne, C. Y., Collins, D. M., Alexander, D. C. & Behr, M. A. (2008). Mycobacterium avium subsp. paratuberculosis and M. avium subsp. avium are independently evolved pathogenic clones of a much broader group of M. avium organisms. J Bacteriol 190, 2479-2487.
28. van Ingen, J., Boeree, M. J., Kösters, K., Wieland, A., Tortoli, E., Dekhuijzen, P. N. & van Soolingen, D. (2009). Proposal to elevate Mycobacterium avium complex ITS sequevar MAC-Q to Mycobacterium vulneris sp. nov. Int J Syst Evol Microbiol 59, 2277-2282.