Detection of Multiple Genotypes of Calicivirus Infection in Asymptomatic Swine in Taiwan

Zoonoses and Public Health

Volumn 59, Issue 6, 2012, Pages 434-444

  Chao, D Y ^a   Wei, J Y ^a   Chang, W F ^a   Wang, J ^b   Wang, L C ^b  

^a NATIONAL CHUNG HSING UNIVERSITY   (Taiwan)

^b TAICHUNG VETERANS GENERAL HOSPITAL   (Taiwan)

Author keywords

Genotype; Norovirus; Sapovirus; Swine; Taiwan; Zoonosis

Indexed keywords

RNA POLYMERASE; VIRUS RNA;

ARTICLE; CALICIVIRUS; CALICIVIRUS INFECTION; FECES ANALYSIS; GENETIC HETEROGENEITY; GENETIC VARIABILITY; GENOTYPE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; SWINE; TAIWAN; VIRUS CAPSID; VIRUS DETECTION; VIRUS GENE; VIRUS STRAIN;

ANIMALS; ASYMPTOMATIC DISEASES; BASE SEQUENCE; CALICIVIRIDAE INFECTIONS; CAPSID PROTEINS; ENVIRONMENTAL MONITORING; FECES; GENETIC VARIATION; GENOTYPE; HUMANS; MOLECULAR SEQUENCE DATA; NOROVIRUS; PHYLOGENY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA REPLICASE; RNA, VIRAL; SAPOVIRUS; SEASONS; SEQUENCE ANALYSIS, DNA; SWINE; SWINE DISEASES; TAIWAN; ZOONOSES;

ANIMALIA; CALICIVIRIDAE; MIRIDAE; NOROVIRUS; SAPOVIRUS; SUIDAE; SUS;

EID: 84865155408     PISSN: 18631959     EISSN: 18632378     Source Type: Journal    
DOI: 10.1111/j.1863-2378.2012.01483.x     Document Type: Article

References (49)

1. Ando, T., J. Noel, and R. Fankhauser, 2000: Genetic classification of Norwalk-like viruses. J. Infect. Dis. 181(Suppl. 2), S336-S348.
2. Bridger, J. C., 1980: Detection of electron microscopy of caliciviruses, astroviruses and rotavirus-like particles in the faeces of piglets with diarrhea. Vet. Rec. 107, 532-533.
3. Bull, R., E. T. V. Tu, C. J. McIver, W. Rawlinson, and P. White, 2006: Emergence of a new norovirus genotype II.4 variants associated with global outbreaks of gastroenteritis. J. Clin. Microbiol. 44, 327-333.
4. Cheetham, S., M. Souza, T. Meulia, S. Grimes, M. Han, and L. J. Saif, 2006: Pathogenesis of a genogroup II human norovirus in gnotobiotic pigs. J. Virol. 80, 10372-10381.
5. Der Poel, W., R. Der Heide, M. Herrera, A. Vivo, and M. Koopmans, 2000: Norwalk-like calicivirus genes in farm animals. Emerg. Infect. Dis. 6, 36-41.
6. Etherington, G., S. Ring, M. Charleston, J. Dicks, V. Rayward-Smith, and I. Roberts, 2006: Tracing the origin and co-phylogeny of the caliciviruses. J. Gen. Virol. 87, 1229-1235.
7. Fankhauser, R., S. Monroe, J. Noel, C. Humphrey, J. Bresee, U. Parashar, T. Ando, and R. Glass, 2002: Epidemiologic and molecular trends of "Norwalk-like viruses" associated with outbreaks of gastroenteritis in the United States. J. Infect. Dis. 186, 1-7.
8. Farkas, T., W. M. Zhong, Y. Jing, P. W. Huang, S. M. Espinosa, N. Martinez, A. L. Morrow, G. M. Ruiz-Palacios, L. K. Pickering, and X. Jiang, 2004: Genetic diversity among sapoviruses. Arch. Virol. 149, 1309-1323.
9. Farkas, T., S. Nakajima, M. Sugieda, X. Deng, W. Zhong, and X. Jiang, 2005: Seroprevalence of noroviruses in swine. J. Clin. Microbiol. 43, 657-661.
10. Girish, R., S. Broor, L. Dar, and D. Ghosh, 2002: Foodborne outbreak caused by a Norwalk-like virus in India. J. Med. Virol. 67, 603-607.
11. Guo, M., J. F. Evermann, and L. J. Saif, 2001: Detection and molecular characterization of cultivable caliciviruses from clinical normal mink and enteric caliciviruses associated with diarrhea in mink. Arch. Virol. 146, 479-493.
12. Guo, L., J. Song, X. Xu, L. Ren, J. Li, H. Zhou, M. Wang, J. Qu, J. Wang, and T. Hung, 2009: Genetic analysis of norovirus in children affected with acute gastroenteritis in Beijing, 2004-2007. J. Clin. Virol. 44, 94-98.
13. Hutson, A., R. Atmar, and M. K. Estes, 2004: Norovirus disease: changing epidemiology and host susceptibility factors. Trends Microbiol. 12, 279-287.
14. Jiang, X., P. W. Huang, W. M. Zhong, T. Farkas, D. W. Cubitt, and D. O. Matson, 1999: Design and evaluation of a primer pair that detects both Norwalk- and Sapporo-like caliciviruses by RT-PCR. J. Virol. Methods 83, 145-154.
15. Kim, H. J., H. S. Cho, K. O. Cho, and N. Y. Park, 2006: Detection and molecular characterization of porcine enteric calicivirus in Korea, genetically related to sapoviruses. J. Vet. Med. B 53, 155-159.
16. Kojima, S., T. Kageyama, S. Fukushi, F. B. Hoshino, M. Shinohara, K. Uchida, K. Natori, N. Takeda, and K. Katayama, 2002: Genogroup-specific PCR primers for detection of Norwalk-like viruses. J. Virol. Methods 100, 107-114.
17. Kroneman, A., H. Vennema, K. Deforche, H. Avoort, S. Peñaranda, M. Oberste, J. Vinjé, and M. Koopmans, 2011: An automated genotyping tool for enteroviruses and noroviruses. J. Clin. Virol. 51, 121-125.
18. Kumar, S., K. Tamura, I. Jakobsen, and M. Nei, 2001: MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17, 1244-1245.
19. Kumar, S., K. Tamura, and N. Nei, 2004: MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 5, 150-163.
20. Lahti, K., and L. Hiisvirta, 1995: Causes of waterborne outbreaks in community water systems in Finland-1980-1992. Water Sci. Technol. 31, 33-36.
21. L'Homme, Y., R. Sansregret, E. Plante-Fortier, A.-M. Lamontagne, G. Lacroix, M. Quardani, J. Deschamps, G. Simard, and C. Simard, 2009: Genetic diversity of porcine norovirus and sapovirus: Canada, 2005-2007. Arch. Virol. 154, 581-593.
22. Marks, P., I. Vipond, D. Carlisle, D. Deakin, R. Fey, and E. Caul, 2000: Evidence for airborne transmission of Norwalk-like virus (NLV) in a hotel restaurant. Epidemiol. Infect. 124, 481-487.
23. Martella, V., K. Banyai, E. Lorusso, A. Bellacicco, N. Decaro, V. Mari, L. J. Saif, V. Costantini, S. D. Grazia, G. Pezzotti, A. Lavazza, and C. Buonavoglia, 2008: Genetic heterogeneity of porcine enteric caliciviruses identified from diarrhoeic piglets. Virus Genes 36, 365-373.
24. Martella, V., N. Decaro, E. Lorusso, A. Radogna, P. Moschidou, F. Amorisco, M. S. Lucente, C. Desario, V. Mari, G. Elia, K. Banyai, L. E. Carmichael, and C. Buonavoglia, 2009: Genetic heterogeneity and recombination in canine noroviruses. J. Virol. 83, 11391-11396.
25. Martinez, M., A. Alcala, G. Carruyo, L. Botero, F. Liprandi, and J. Ludert, 2006: Molecular detection of porcine enteric caliciviruses in Venezuelan farms. Vet. Microbiol. 116, 77-84.
26. Mattison, K., A. Cook, F. Pollari, R. Friendship, D. Kelton, S. Bidawid, and J. M. Farber, 2007: Human noroviruses in swine and cattle. Emerg. Infect. Dis. 13, 1184-1188.
27. Mauroy, A., A. Scipioni, E. Mathijs, C. Miry, D. Ziant, C. Thys, and E. Thiry, 2008: Noroviruses and sapoviruses in pigs in Belgium. Arch. Virol. 153, 1927-1931.
28. Mead, P., L. Slutsker, V. Dietz, L. Mccaig, J. Bresee, C. Shapiro, P. Griffin, and R. Tauxe, 1999: Food-related illness and death in the United States. Emerg. Infect. Dis. 5, 607-625.
29. Motomura, K., T. Oka, M. Yokoyama, H. Nakamura, H. Mori, H. Ode, G. Hansman, K. Katayama, T. Kanda, T. Tanaka, N. Takeda, and H. Sato, 2008: Identification of monomorphic and divergent haplotypes in the 2006-2007 norovirus GII/4 epidemic population by genomewide tracing of evolutionary history. J. Virol. 82, 11247-11262.
30. Nakamura, K., Y. Saga, M. Iwai, M. Obara, E. Horimoto, S. Hasegawa, T. Kurata, H. Okumura, M. Nagoshi, and T. Takizawa, 2010: Frequent detection of noroviruses and sapoviruses in swine and high genetic diversity of porcine sapovirus in Japan during Fiscal Year 2008. J. Clin. Microbiol. 48, 1215-1222.
31. O'Neill, H., C. McCaughey, P. Coyle, D. Wyatt, and F. Mitchell, 2002: Clinical utility of nested multiplex RT-PCR for group F adenovirus, rotavirus and Norwalk-like viruses in acute viral gastroenteritis in children and adults. J. Clin. Virol. 25, 335-343.
32. Parashar, U., and S. Monroe, 2001: "Norwalk-like viruses" as a cause of foodborne disease outbreaks. Rev. Med. Virol. 11, 243-252.
33. Radford, A. D., R. M. Gaskell, and C. A. Hart, 2004: Human norovirus infection and the lessons from animal caliciviruses. Curr. Opin. Infect. Dis. 17, 471-478.
34. Schuffenecker, L., T. Ando, D. Thouvenot, B. Lina, and M. Aymard, 2001: Genetic classification of "Sapporo-like viruses". Arch. Virol. 146, 2115-2132.
35. Scipioni, A., A. Mauroy, J. Vinje, and E. Thiry, 2008: Animal noroviruses. Vet. J. 178, 32-45.
36. Siebenga, J., H. Vennema, B. Renckens, E. D. Bruin, B. V. D. Veer, R. J. Siezen, and M. Koopmans, 2007: Epochal evolution of GGII.4 norovirus capsid proteins from 1995 to 2006. J. Virol. 81, 9932-9941.
37. Smith, A. W., D. E. Mattson, D. E. Skilling, and J. A. Schmitz, 1983: Isolation and partial characterization of a calicivirus from calves. Am. J. Vet. Res. 44, 851-855.
38. Sugieda, M., H. Nagaoka, T. Ohshita, S. Nakamura, and S. Nakajima, 1998: Detection of Norwalk-like virus genes in the caecum contents of pigs. Arch. Virol. 143, 1215-1221.
39. Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins, 1997: The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25, 4876-4882.
40. Tu, E., R. Bull, G. Greening, J. Hewitt, M. Lyon, J. Marshall, C. McIver, W. Rawlinson, and P. White, 2008: Epidemics of gastroenteritis during 2006 were associated with the spread of norovirus GII.4 variants 2006a and 2006b. Clin. Infect. Dis. 46, 413-420.
41. Vinje, J., R. Hamidjaja, and M. Sobsey, 2004: Development and application of a capsid VP1 (region D) based reverse transcription PCR assay for genotyping of genogroup I and II noroviruses. J. Virol. Methods 116, 109-117.
42. Wang, Q.-H., M. Han, M. Souza, J. Funk, and L. J. Saif, 2005a: Porcine noroviruses related to human noroviruses. Emerg. Infect. Dis. 11, 1874-1881.
43. Wang, Q., M. Han, J. Funk, G. Bowman, D. Janies, and L. J. Saif, 2005b: Genetic diversity and recombination of porcine sapoviruses. J. Clin. Microbiol. 43, 5963-5972.
44. Wang, Q.-H., M. Souza, J. Funk, W. Zhang, and L. J. Saif, 2006: Prevalence of noroviruses and sapoviruses in swine of various ages determined by reverse transcription-PCR and microwell hybridization assays. J. Clin. Microbiol. 44, 2057-2062.
45. Wang, Q.-H., V. Costantini, and L. J. Saif, 2007: Porcine enteric caliciviruses: genetic and antigenic relatedness to human caliciviruses, diagnosis and epidemiology. Vaccine 25, 5433-5466.
46. Widdowson, M. A., E. H. Cramer, L. Hadley, J. Bresee, R. Beard, S. N. Bulens, M. Charles, W. Chege, E. Isakbaeve, J. Wright, E. Mintz, D. Forney, J. Massey, R. Glass, and S. Monroe, 2004: Outbreaks of acute gastroenteritis on cruise ships and on land: identification of a predominant circulating strain of norovirus-United States, 2002. J. Infect. Dis. 190, 27-36.
47. Woode, G. N., and J. C. Bridger, 1978: Isolation of small viruses resembling astroviruses and caliciviruses from acute enteritis of calves. J. Med. Microbiol. 11, 441-452.
48. Wu, F., T. Oka, K. Katayama, H. Wu, D. D. Jiang, T. Miyamura, N. Takeda, and G. Hansman, 2006: Genetic diversity of noroviruses in Taiwan between November 2004 and March 2005. Arch. Virol. 151, 1319-1327.
49. Zheng, D.-P., T. Ando, R. Fankhauser, R. Beard, R. Glass, and S. Monroe, 2006: Norovirus classification and proposed strain nomenclature. Virology 346, 312-323.