Natural interspecies recombinant bovine/porcine enterovirus in sheep

Journal of General Virology

Volumn 93, Issue PART 9, 2012, Pages 1941-1951

  Boros, Ákos ^a   Pankovics, Péter ^a   Knowles, Nick J ^b   Reuter, Gábor ^a  

^a UNIVERSITY OF PÉCS   (Hungary)

^b INSTITUTE FOR ANIMAL HEALTH   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; ARTICLE; BOVINE ENTEROVIRUS; DOMESTIC ANIMAL; FECES ANALYSIS; GENE SEQUENCE; GENOME ANALYSIS; MOLECULAR PHYLOGENY; NUCLEOTIDE SEQUENCE; OVINE ENTEROVIRUS TYPE 1; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA SEQUENCE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SHEEP; TESCHOVIRUS; VIRUS GENOME; VIRUS IDENTIFICATION; VIRUS RECOMBINATION;

5' UNTRANSLATED REGIONS; ANIMALS; BASE SEQUENCE; ENTEROVIRUS; ENTEROVIRUS INFECTIONS; ENTEROVIRUS, BOVINE; ENTEROVIRUSES, PORCINE; FECES; HUMANS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PHYLOGENY; RECOMBINATION, GENETIC; RNA, VIRAL; SHEEP; SHEEP DISEASES; SHEEP, DOMESTIC;

EID: 84865126810     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/vir.0.041335-0     Document Type: Article

References (50)

1. Agol, V. I. (2010). Picornaviruses as a model for studying the nature of RNA recombination. In The Picornaviruses, pp. 239-252. Edited by E. Ehrenfeld, E. Domingo & R. P. Roos. Washington, DC: American Society for Microbiology.
2. Blas-Machado, U., Saliki, J. T., Boileau, M. J., Goens, S. D., Caseltine, S. L., Duffy, J. C. & Welsh, R. D. (2007). Fatal ulcerative and hemorrhagic typhlocolitis in a pregnant heifer associated with natural bovine enterovirus type-1 infection. Vet Pathol 44, 110-115.
3. Bolanaki, E., Kottaridi, C., Markoulatos, P., Kyriakopoulou, Z., Margaritis, L. & Katsorchis, T. (2007). Partial 3D gene sequences of Coxsackie viruses reveal interspecies exchanges. Virus Genes 35, 129-140.
4. Borman, A. M., Deliat, F. G. & Kean, K. M. (1994). Sequences within the poliovirus internal ribosome entry segment control viral RNA synthesis. EMBO J 13, 3149-3157.
5. Boros, A., Pankovics, P. & Reuter, G. (2011a). Characterization of a novel porcine enterovirus in domestic pig in Hungary. Infect Genet Evol 11, 1096-1102.
6. Boros, A., Pankovics, P., Simmonds, P. & Reuter, G. (2011b). Novel positive-sense, single-stranded RNA (+ssRNA) virus with dicistronic genome from intestinal content of freshwater carp (Cyprinus carpio). PLoS ONE 6, e29145.
7. Boros, A., Nemes, C., Pankovics, P., Bíró, H., Kapusinszky, B., Delwart, E. & Reuter, G. (2012). Characterization of a novel porcine enterovirus in wild boars in Hungary. Arch Virol 157, 981-986.
8. Cooper, P. D., Steiner-Pryor, A., Scotti, P. D. & Delong, D. (1974). On the nature of poliovirus genetic recombinants. J Gen Virol 23, 41-49.
9. Fong, T. T., Griffin, D. W. & Lipp, E. K. (2005). Molecular assays for targeting human and bovine enteric viruses in coastal waters and their application for library-independent source tracking. Appl Environ Microbiol 71, 2070-2078.
10. Gmyl, A. P., Korshenko, S. A., Belousov, E. V., Khitrina, E. V. & Agol, V. I. (2003). Nonreplicative homologous RNA recombination: promiscuous joining of RNA pieces? RNA 9, 1221-1231.
11. Gür, S., Yapkiç, O. & Yilmaz, A. (2008). Serological survey of bovine enterovirus type 1 in different mammalian species in Turkey. Zoonoses Public Health 55, 106-111.
12. Harvala, H., Sharp, C. P., Ngole, E. M., Delaporte, E., Peeters, M. & Simmonds, P. (2011). Detection and genetic characterization of enteroviruses circulating among wild populations of chimpanzees in Cameroon: relationship with human and simian enteroviruses. J Virol 85, 4480-4486.
13. Hellen, C. U. T., Pestova, T. V., Litterst, M. & Wimmer, E. (1994). The cellular polypeptide p57 (pyrimidine tract-binding protein) binds to multiple sites in the poliovirus 5′ nontranslated region. J Virol 68, 941-950.
14. Jarvis, T. C. & Kirkegaard, K. (1992). Poliovirus RNA recombination: mechanistic studies in the absence of selection. EMBO J 11, 3135-3145.
15. Jiménez-Clavero, M. A., Escribano-Romero, E., Mansilla, C., Gómez, N., Córdoba, L., Roblas, N., Ponz, F., Ley, V. & Sáiz, J. C. (2005). Survey of bovine enterovirus in biological and environmental samples by a highly sensitive real-time reverse transcription-PCR. Appl Environ Microbiol 71, 3536-3543.
16. King, A. M. Q. (1988). Preferred sites of recombination in poliovirus RNA: an analysis of 40 intertypic cross-over sequences. Nucleic Acids Res 16, 11705-11723.
17. Knowles, N. J., Buckley, L. S. & Pereira, H. G. (1979). Classification of porcine enteroviruses by antigenic analysis and cytopathic effects in tissue culture: description of 3 new serotypes. Arch Virol 62, 201-208.
18. Knowles, N. J., Hovi, T., Hyypiä, T., King, A. M. Q., Lindberg, M., Pallansch, M. A., Palmenberg, A. C., Simmonds, P., Skern, T. & other authors (2012). Picornaviridae. In Virus Taxonomy: Classification and Nomenclature of Viruses: Ninth Report of the International Committee on Taxonomy of Viruses, pp. 855-880. Edited by A. M. Q. King, M. J. Adams, E. B. Carstens & E. J. Lefkowitz. San Diego: Elsevier.
19. Kyriakopoulou, Z., Dedepsidis, E., Pliaka, V., Tsakogiannis, D., Pratti, A., Levidiotou-Stefanou, S. & Markoulatos, P. (2010). Fullgenome sequence analysis of a multirecombinant echovirus 3 strain isolated from sewage in Greece. J Clin Microbiol 48, 1513-1519.
20. Ledinko, N. (1963). Genetic recombination with poliovirus type 1. Studies of crosses between a normal horse serum-resistant mutant and several guanidine-resistant mutants of the same strain. Virology 20, 107-119.
21. Ley, V., Higgins, J. & Fayer, R. (2002). Bovine enteroviruses as indicators of fecal contamination. Appl Environ Microbiol 68, 3455-3461.
22. Lole, K. S., Bollinger, R. C., Paranjape, R. S., Gadkari, D., Kulkarni, S. S., Novak, N. G., Ingersoll, R., Sheppard, H. W. & Ray, S. C. (1999). Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J Virol 73, 152-160.
23. Lukashev, A. N. (2005). Role of recombination in evolution of enteroviruses. Rev Med Virol 15, 157-167.
24. Lukashev, A. N. (2010). Recombination among picornaviruses. Rev Med Virol 20, 327-337.
25. Lukashev, A. N., Lashkevich, V. A., Ivanova, O. E., Koroleva, G. A., Hinkkanen, A. E. & Ilonen, J. (2003). Recombination in circulating enteroviruses. J Virol 77, 10423-10431.
26. Martin, D. P., Lemey, P., Lott, M., Moulton, V., Posada, D. & Lefeuvre, P. (2010). RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26, 2462-2463.
27. Matsuura, K., Inoshima, Y., Kameyama, K. & Murakami, K. (2011). Establishment of a novel ovine kidney cell line for isolation and propagation of viruses infecting domestic cloven-hoofed animal species. In Vitro Cell Dev Biol Anim 47, 459-463.
28. Minor, P. D. (1992). The molecular biology of poliovaccines. J Gen Virol 73, 3065-3077.
29. Nicholas, K. B. & Nicholas, H. B. (1997). GeneDoc: a tool for editing and annotating multiple sequence alignments. National Resource for Biomedical Supercomputing. http://www.nrbsc.org. Accessed 02 Dec 2011.
30. Nollens, H. H., Rivera, R., Palacios, G., Wellehan, J. F., Saliki, J. T., Caseltine, S. L., Smith, C. R., Jensen, E. D., Hui, J. & other authors (2009). New recognition of Enterovirus infections in bottlenose dolphins (Tursiops truncatus). Vet Microbiol 139, 170-175.
31. Oberste, M. S., Maher, K., Kilpatrick, D. R. & Pallansch, M. A. (1999). Molecular evolution of the human enteroviruses: correlation of serotype with VP1 sequence and application to picornavirus classification. J Virol 73, 1941-1948.
32. Oberste, M. S., Maher, K. & Pallansch, M. A. (2007). Complete genome sequences for nine simian enteroviruses. J Gen Virol 88, 3360-3372.
33. Pallansch, M. & Roos, R. (2007). Enteroviruses. In Fields Virology, 5th edn, pp. 839-893. Edited by D. M. Knipe & P. M. Howley. Philadelphia: Lippincott Williams & Wilkins.
34. Pilipenko, E. V., Gmyl, A. P. & Agol, V. I. (1995). A model for rearrangements in RNA genomes. Nucleic Acids Res 23, 1870-1875.
35. Romanova, L. I., Blinov, V. M., Tolskaya, E. A., Viktorova, E. G., Kolesnikova, M. S., Guseva, E. A. & Agol, V. I. (1986). The primary structure of crossover regions of intertypic poliovirus recombinants: a model of recombination between RNA genomes. Virology 155, 202-213.
36. Savolainen-Kopra, C. & Blomqvist, S. (2010). Mechanisms of genetic variation in polioviruses. Rev Med Virol 20, 358-371.
37. Sergiescu, D., Horodniceanu, F., Klein, R. & Crainic, R. (1966). Genetic transfer of guanidine resistance from type 2 to type 1 poliovirus. Arch Gesamte Virusforsch 18, 231-243.
38. Smura, T., Blomqvist, S., Paananen, A., Vuorinen, T., Sobotová, Z., Bubovica, V., Ivanova, O., Hovi, T. & Roivainen, M. (2007). Enterovirus surveillance reveals proposed new serotypes and provides new insight into enterovirus 5′-untranslated region evolution. J Gen Virol 88, 2520-2526.
39. Takeda, N., Tanimura, M. & Miyamura, K. (1994). Molecular evolution of the major capsid protein VP1 of enterovirus 70. J Virol 68, 854-862.
40. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
41. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
42. Wimmer, E., Hellen, C. U. T. & Cao, X. (1993). Genetics of poliovirus. Annu Rev Genet 27, 353-436.
43. Yoshii, T., Natori, K. & Kono, R. (1977). Replication of enterovirus 70 in non-primate cell cultures. J Gen Virol 36, 377-384.
44. Yozwiak, N. L., Skewes-Cox, P., Gordon, A., Saborio, S., Kuan, G., Balmaseda, A., Ganem, D., Harris, E. & DeRisi, J. L. (2010). Human enterovirus 109: a novel interspecies recombinant enterovirus isolated from a case of acute pediatric respiratory illness in Nicaragua. J Virol 84, 9047-9058.
45. Zell, R. & Stelzner, A. (1997). Application of genome sequence information to the classification of bovine enteroviruses: the importance of 5′- and 39-nontranslated regions. Virus Res 51, 213-229.
46. Zell, R., Sidigi, K., Henke, A., Schmidt-Brauns, J., Hoey, E., Martin, S. & Stelzner, A. (1999). Functional features of the bovine enterovirus 5′-non-translated region. J Gen Virol 80, 2299-2309.
47. Zell, R., Krumbholz, A., Dauber, M., Hoey, E. & Wutzler, P. (2006). Molecular-based reclassification of the bovine enteroviruses. J Gen Virol 87, 375-385.
48. Zhang, G., Haydon, D. T., Knowles, N. J. & McCauley, J. W. (1999). Molecular evolution of swine vesicular disease virus. J Gen Virol 80, 639-651.
49. Zheng, T. (2007). Characterisation of two enteroviruses isolated from Australian brushtail possums (Trichosurus vulpecula) in New Zealand. Arch Virol 152, 191-198.
50. Zuker, M. (2003). Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31, 3406-3415.