Survey of bovine enterovirus in biological and environmental samples by a highly sensitive real-time reverse transcription-PCR

Applied and Environmental Microbiology

Volumn 71, Issue 7, 2005, Pages 3536-3543

  Jiménez Clavero, Miguel Angel ^a,b   Escribano Romero, Estela ^a   Mansilla, Carmen ^a   Gómez, Nuria ^a   Córdoba, Laura ^a   Roblas, Neftalí ^a   Ponz, Fernando ^a   Ley, Victoria ^a   Sáiz, Juan Carlos ^a  

^a INIA   (Spain)

^b Laboratorio Central de Veterinaria   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

BIODIVERSITY; CONTAMINATION; FILTRATION; GENES; SURFACE WATERS;

BOVINE ENTEROVIRUS; BOVINE FECES; GENOMIC SEQUENCES; MOLECULAR EPIDEMIOLOGY;

VIRUSES;

VIRUS RNA;

VIRAL DISEASE;

ARTICLE; BOVINE ENTEROVIRUS; CATTLE; ENTEROVIRUS; FECES ANALYSIS; GOAT; HORSE; NONHUMAN; NUCLEOTIDE SEQUENCE; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SHEEP; VIRUS ISOLATION; WATER CONTAMINATION; WATER SAMPLING;

ANIMALS; ANIMALS, DOMESTIC; CATTLE; ENTEROVIRUS, BOVINE; ENVIRONMENTAL MONITORING; FECES; FILTRATION; FRESH WATER; MOLECULAR SEQUENCE DATA; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS, DNA; WATER POLLUTION;

ANIMALIA; BOS TAURUS; BOVINAE; BOVINE ENTEROVIRUS; CAPRA HIRCUS; CERVIDAE; ENTEROVIRUS; EQUIDAE; OVIS ARIES;

EID: 22144453608     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.71.7.3536-3543.2005     Document Type: Article

References (37)

1. Abbaszadegan, M., P. Stewart, and M. Le Chevallier. 1999. A strategy for detection of viruses in ground water by PCR. Appl. Environ. Microbiol. 65:444-449.
2. Andersen, A. A. 1978. Cross reaction between enterovirus and South African Territories 15 foot-and-mouth disease virus. Am. J. Vet. Res. 39:59-63.
3. Bergh, O., K. Y. Borsheim, G. Bratbak, and M. Heldal. 1989. High abundance of viruses found in the aquatic environment. Nature 340:467-468.
4. Bosch, A. 1998. Human enteric viruses in the water environment: a minireview. Int. Microbiol. 1:191-196.
5. Chapron, C. D., N. A. Ballester, J. H. Fontaine, C. N. Frades, and A. B. Margolin. 2000. Detection of astroviruses, enteroviruses, and adenovirus types 40 and 41 in surface waters collected and evaluated by the information collection rule and an integrated cell culture-nested PCR procedure. Appl. Environ. Microbiol. 66:2520-2525.
6. Clesceri, L. S., A. E. Greenberg, and A. D. Eaton (ed.). 1998. Standard methods for the examination of water and wastewater, 20th ed. American Public Health Association, Washington, D.C.
7. Felsenstein, J. 1993. PHYLIP (phytogeny inference package version 3.5c). Department of Genetics, University of Washington, Seattle. (Distributed by the author.)
8. Goens, S. D., S. Botero, A. Zemla, E. Zhou, and M. L. Perdue. 2004. Bovine enterovirus type 2. Complete genomic sequence and molecular modeling of the reference strain and wild type isolate from endemically infected US cattle. J. Gen. Virol. 85:3195-3203.
9. Jimenez-Clavero, M. A., C. Fernandez, J. A. Ortiz, J. Pro, G. Carbonell, J. V. Tarazona, N. Roblas, and V. Ley. 2003. Teschoviruses as indicators of fecal contamination of water. Appl. Environ. Microbiol. 69:6311-6315.
10. Katzenelson, E., B. Fattal, and T. Hostovestky. 1976. Organic flocculation: an efficient second step concentration method for the detection of viruses in tap water. Appl. Environ. Microbiol. 32:638-639.
11. King, A. M. Q., F. Brown, P Christian, T. Hovi, T. Hyypiä, N. J. Knowles, S. M. Lemon, P. D. Minor, A. C. Palmemberg, T. Skern, and G. Stanway. 2000. Picornaviridae, p. 657-673. In M. H. V. Van Regenmortel, C. M. Fauquet, D. H. L. Bishop, C. H. Calisher, E. B. Carsten, M. K. Estes, S. M. Lemon, J. Maniloff, M. A. Mayo, D. McGeoch, C. R. Pringle, and R. B. Wickner (ed.), Virus taxonomy. Seventh report of the International Committee for the Taxonomy of Viruses. Academic Press, New York, N.Y.
12. Knowles, N. J., and I. T. Barnett. 1985. A serological classification of bovine enteroviruses. Arch. Virol. 83:141-155.
13. Kumar, S., K. Tamura, and M. Nei. 2004. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 5:150-163.
14. Ley, V., J. Higgins, and R. Fayer. 2002. Bovine enteroviruses as indicators of fecal contamination. Appl. Environ. Microbiol. 68:3455-3461.
15. Ley, V., and M. A. Jimenez-Clavero. March 2004. Method to identify environmental contamination by detecting enteric viruses. U.S. patent application 2004/0058312 A1.
16. 15a. Ley, V., and M. A. Jimenez-Clavero. February 2004. Method to identity environmental contamination by detecting enteric viruses. European patent publication EP 336 663 A3 (application 03380032.7).
17. Maluquer de Motes, C., P. Clemente-Casares, A. Hundesa, M. Martin, and R. Girones. 2004. Detection of bovine and porcine adenoviruses for tracing the source of fecal contamination. Appl. Environ. Microbiol. 70:1448-1454.
18. McCarthy, F. M., G. A. Smith, and J. S. Mattick. 1999. Molecular characterization of Australian bovine enteroviruses. Vet. Microbiol. 68:71-81.
19. McNally, R. M., J. A. Earle, M. McIlhatton, E. M. Hoey, and S. J. Martin. 1994. The nucleotide sequence of the 5′ non-coding and capsid coding regions of two bovine enterovirus strains. Arch. Virol. 139:287-299.
20. Mehnert, D. U., K. E. Stewien, C. M. Harsi, A. P. Queiroz, J. M. Candeias, and J. A. Candeias. 1997. Detection of rotavirus in sewage and creek water: efficiency of the concentration method. Mem. Inst. Oswaldo Cruz 92:97-100.
21. Mendez, I. I., I. I. Hermann, P. R. Hazelton, and K. M. Coombs. 2000. A comparative analysis of Freon substitutes in the purification of reovirus and calicivirus. J. Virol. Methods 90:59-67.
22. Minor, P. D. 1992. The molecular biology of polio vaccines. J. Gen. Virol. 73:3065-3077.
23. Pallanch, M. A., and R. P. Ross. 2001. Enteroviruses: polioviruses, coxsackie, echoviruses and newer enteroviruses, p. 723-775. In D. Knipe and P. Howley (ed.), Fields virology. 4th ed. Williams and Wilkins Publishers, Baltimore, Md.
24. Pianetti, A., W. Baffone, B. Citterio, A. Casaroli, F. Bruscolini, and L. Salvaggio. 2000. Presence of enteroviruses and reoviruses in the waters of the Italian coast of the Adriatic Sea. Epidemiol. Infect. 125:455-462.
25. Pilipenko, E. V., V. M. Blinov, L. I. Romanova, A. N. Sinyakov, S. V. Maslova, and V. I. Agol. 1989. Conserved structural domains in the 5′-untranslated region of picornaviral genomes: an analysis of the segment controlling translation and neurovirulence. Virology 168:201-209.
26. Schvoerer, E., F. Bonnet, V. Dubois, G. Cazaux, R. Serceau, H. J. Fleury, and M. E. Lafon. 2000. PCR detection of human enteric viruses in bathing areas, waste waters and human stools in southwestern France. Res. Microbiol. 151:693-701.
27. Schvoerer, E., M. Ventura, O. Dubos, G. Cazaux, R. Serceau, N. Gournier, V. Dubois, P. Caminade, H. J. Fleury, and M. E. Lafon. 2001. Qualitative and quantitative molecular detection of enteroviruses in water from bathing areas and from a sewage treatment plant. Res. Microbiol. 152:179-186.
28. Shiroki, K., T. Ishii, T. Aoki, Y. Ota, W.-X. Yang, T. Komatsu, Y. Ami, M. Arita, S. Abe, S. Hashizume, and A. Nomoto. 1997. Host range phenotype induced by mutations in the internal ribosomal entry site of poliovirus RNA. J. Virol. 71:1-8.
29. Siafakas, N., P. Markoulatos, and G. Stanway. 2002. Molecular classification of coxsackie A viruses on the basis of the 5′-UTR: structural and evolutionary aspects. J. Mol. Evol. 55:638-652.
30. Skinner, M. A., V. R. Racaniello, G. Dunn, J. Cooper, P. D. Minor, and J. W. Almond. 1989. New model for the secondary structure of the 5′ non-coding RNA of poliovirus is supported by biochemical and genetic data that also show that RNA secondary structure is important in neurovirulence. J. Mol. Biol. 207:379-392.
31. Sobsey, M. D., and B. L. Jones. 1979. Concentration of poliovirus from tap water using positively charged microporous filters. Appl. Environ. Microbiol. 37:588-595.
32. Stanway, G., T. Hovi, N. J. Knowles, and T. Hyypiä. 2002. Molecular and biological basis of picornavirus taxonomy, p. 17-24. In B. L. Semler and E. Wimmer (ed.), Molecular biology of picornaviruses. ASM Press, Washington, D.C.
33. Thompson, J. D., D., G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
34. Wyn-Jones, A. P., and J. Sellwood. 2001. Enteric viruses in the aquatic environment. J. Appl. Microbiol. 91:945-962.
35. Yilmaz, A., and E. F. Kaleta. 2003. Evaluation of virucidal activity of three commercial disinfectants and formic acid using bovine enterovirus type 1 (ECBO virus), mammalian orthoreovirus type 1 and bovine adenovirus type 1. Vet. J. 166:67-78.
36. Zell, R., and A. Stelzner. 1997. Application of genome sequence information to the classification of bovine enteroviruses: the importance of the 5′- and 3′-nontranslated regions. Virus Res. 51:213-229.
37. Zhang, A. Q., J. R. Smith, and G. W. Burgess. 1990. Blocking enzyme-linked immunosorbent assay for detection of antibodies against bovine enterovirus. Vet. Microbiol. 21:275-281.