Mass Spectrometry in the Clinical Microbiology Laboratory, Part I: PCR-MS

Clinical Microbiology Newsletter

Volumn 34, Issue 17, 2012, Pages 135-140

  Khot, Prasanna D ^a   Fisher, Mark A ^a,b  

^a ARUP INSTITUTE FOR CLINICAL AND EXPERIMENTAL PATHOLOGY   (United States)

^b UNIVERSITY OF UTAH SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA;

ARTICLE; BACTERIUM ISOLATION; CLINICAL LABORATORY; DIAGNOSTIC ACCURACY; ELECTROSPRAY MASS SPECTROMETRY; GRAM NEGATIVE BACTERIUM; GRAM POSITIVE BACTERIUM; ION CYCLOTRON RESONANCE MASS SPECTROMETRY; MASS SPECTROMETRY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; NUCLEIC ACID ANALYSIS; POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY;

EID: 84865116435     PISSN: 01964399     EISSN: 18734391     Source Type: Journal    
DOI: 10.1016/j.clinmicnews.2012.08.001     Document Type: Article

References (45)

1. Anhalt J.P., Fenselau C. Identification of bacteria using mass spectrometry. Anal. Chem. 1975, 47:219-225.
2. Cain T.C., et al. Differentiation of bacteria using protein profiles from matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Rapid Commun. Mass. Spectrom. 1994, 8:1026-1030.
3. Claydon M.A., et al. The rapid identification of intact microorganisms using mass spectrometry. Nat. Biotechnol. 1996, 14:1584-1586.
4. Holland R.D., et al. Rapid identification of intact whole bacteria based on spectral patterns using matrix-assisted laser desorption/ionization with time-of-flight mass spectrometry. Rapid Commun. Mass. Spectrom. 1996, 10:1227-1232.
5. Krishnamurthy T., et al. Detection of pathogenic and non-pathogenic bacteria by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Rapid Commun. Mass Spectrom. 1996, 10:883-888.
6. Carbonnelle E., et al. Rapid identification of staphylococci isolated in clinical microbiology laboratories by matrix-assisted laser desorption ionization-time of flight mass spectrometry. J. Clin. Microbiol. 2007, 45:2156-2161.
7. Conway G.C., et al. Phyloproteomics: species identification of Enterobacteriaceae using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. J. Mol. Microbiol. Biotechnol. 2001, 3:103-112.
8. Hsieh S.Y., et al. Highly efficient classification and identification of human pathogenic bacteria by MALDI-TOF MS. Mol. Cell. Proteomics 2008, 7:448-456.
9. Jarman K.H., et al. An algorithm for automated bacterial identification using matrix-assisted laser desorption/ionization mass spectrometry. Anal. Chem. 2000, 72:1217-1223.
10. Keys C.J., et al. Compilation of a MALDI-TOF mass spectral database for the rapid screening and characterisation of bacteria implicated in human infectious diseases. Infect. Genet. Evol. 2004, 4:221-242.
11. Kallow W., et al. MALDI-TOF MS for microbial identification: years of experimental development to an established protocol. Mass spectrometry for microbial proteomics 2010, 255-276. Wiley, West Sussex, United Kingdom. H.N. Shah, S.E. Gharbia (Eds.).
12. Fenselau C., Demirev P.A. Characterization of intact microorganisms by MALDI mass spectrometry. Mass. Spectrom. Rev. 2001, 20:157-171.
13. Ryzhov V., Fenselau C. Characterization of the protein subset desorbed by MALDI from whole bacterial cells. Anal. Chem. 2001, 73:746-750.
14. Seng P., et al. Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Clin. Infect. Dis. 2009, 49:543-551.
15. Suh M.J., Limbach P.A. Investigation of methods suitable for the matrix-assisted laser desorption/ionization mass spectrometric analysis of proteins from ribonucleoprotein complexes. Eur. J. Mass Spectrom. 2004, 10:89-99.
16. Muddiman D.C., et al. Characterization of PCR products from bacilli using electrospray ionization FTICR mass spectrometry. Anal. Chem. 1996, 68:3705-3712.
17. Naito Y., et al. Molecular mass measurement of polymerase chain reaction products amplified from human blood DNA by electrospray ionization mass spectrometry. Rapid Commun. Mass. Spectrom. 1995, 9:1484-1486.
18. Wunschel D.S., et al. Analysis of double-stranded polymerase chain reaction products from the Bacillus cereus group by electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry. Rapid Commun. Mass. Spectrom. 1996, 10:29-35.
19. Muddiman D.C., et al. Length and base composition of PCR-amplified nucleic acids using mass measurements from electrospray ionization mass spectrometry. Anal. Chem. 1997, 69:1543-1549.
20. Aaserud D.J., et al. Accurate base composition of double-strand DNA by mass spectrometry. J. Am. Soc. Mass Spectrom. 1996, 7:1266-1269.
21. Krahmer M.T., et al. Electrospray quadrupole mass spectrometry analysis of model oligonucleotides and polymerase chain reaction products: determination of base substitutions, nucleotide additions/deletions, and chemical modifications. Anal. Chem. 1999, 71:2893-2900.
22. Van Ert M.N., et al. Mass spectrometry provides accurate characterization of two genetic marker types in Bacillus anthracis. Biotechniques 2004, 37:642-644. 646, 648 passim.
23. Wunschel D.S., et al. Heterogeneity in Bacillus cereus PCR products detected by ESI-FTICR mass spectrometry. Anal. Chem. 1998, 70:1203-1207.
24. Wunschel D.S., et al. Electrospray ionization Fourier transform ion cyclotron resonance analysis of large polymerase chain reaction products. J. Am. Soc. Mass. Spectrom. 2000, 11:333-337.
25. Briese T., et al. Diagnostic system for rapid and sensitive differential detection of pathogens. Emerg. Infect. Dis. 2005, 11:310-313.
26. Hofstadler S.A., et al. TIGER: the universal biosensor. Int. J. Mass Spectrom. 2005, 242:23-41.
27. Siuzdak G. The expanding role of mass spectrometry in biotechnology 2006, MCC Press, San Diego, CA. 2nd ed.
28. Baldwin C.D., et al. Usefulness of multilocus polymerase chain reaction followed by electrospray ionization mass spectrometry to identify a diverse panel of bacterial isolates. Diagn. Microbiol. Infect. Dis. 2009, 63:403-408.
29. Bouakaze C., et al. Matrix-assisted laser desorption ionization-time of flight mass spectrometry-based single nucleotide polymorphism genotyping assay using iPLEX gold technology for identification of Mycobacterium tuberculosis complex species and lineages. J. Clin. Microbiol. 2011, 49:3292-3299.
30. Eshoo M.W., et al. Detection and identification of Ehrlichia species in blood by use of PCR and electrospray ionization mass spectrometry. J. Clin. Microbiol. 2010, 48:472-478.
31. Ecker D.J., et al. Molecular genotyping of microbes by multilocus PCR and mass spectrometry: a new tool for hospital infection control and public health surveillance. Methods Mol. Biol. 2009, 551:71-87.
32. Ecker D.J., et al. Ibis T5000: a universal biosensor approach for microbiology. Nat. Rev. Microbiol. 2008, 6:553-558.
33. Kaleta E.J., et al. Use of PCR coupled with electrospray ionization mass spectrometry for rapid identification of bacterial and yeast bloodstream pathogens from blood culture bottles. J. Clin. Microbiol. 2011, 49:345-353.
34. Brannon P., Kiehn T.E. Large-scale clinical comparison of the lysis-centrifugation and radiometric systems for blood culture. J. Clin. Microbiol. 1985, 22:951-954.
35. Henry N.K., et al. Microbiological and clinical evaluation of the isolator lysis-centrifugation blood culture tube. J. Clin. Microbiol. 1983, 17:864-869.
36. Dominguez S.R., et al. Multiplex MassTag-PCR for respiratory pathogens in pediatric nasopharyngeal washes negative by conventional diagnostic testing shows a high prevalence of viruses belonging to a newly recognized rhinovirus clade. J. Clin. Virol. 2008, 43:219-222.
37. Lamson D., et al. MassTag polymerase-chain-reaction detection of respiratory pathogens, including a new rhinovirus genotype, that caused influenza-like illness in New York State during 2004-2005. J. Infect. Dis. 2006, 194:1398-1402.
38. Palacios G., et al. Streptococcus pneumoniae coinfection is correlated with the severity of H1N1 pandemic influenza. PLoS One 2009, 4:e8540.
39. Tokarz R., et al. Longitudinal molecular microbial analysis of influenza-like illness in New York City, May 2009 through May 2010. Virol. J. 2011, 8:288.
40. Richmond G.S., et al. MassCode liquid arrays as a tool for multiplexed high-throughput genetic profiling. PLoS One 2011, 6:e18967.
41. Syrmis M.W., et al. Comparison of a multiplexed MassARRAY system with real-time allele-specific PCR technology for genotyping of methicillin-resistant Staphylococcus aureus. Clin. Microbiol. Infect. 2011, 17:1804-1810.
42. Burckhardt I., Zimmermann S. Using matrix-assisted laser desorption ionization-time of flight mass spectrometry to detect carbapenem resistance within 1 to 2.5 hours. J. Clin. Microbiol. 2011, 49:3321-3324.
43. Hrabak J., et al. Carbapenemase activity detection by matrix-assisted laser desorption ionization-time of flight mass spectrometry. J. Clin. Microbiol. 2011, 49:3222-3227.
44. Balog C.I., et al. The feasibility of MS and advanced data processing for monitoring Schistosoma mansoni infection. Proteomics Clin. Appl. 2010, 4:499-510.
45. Lv H., et al. Development of an integrated metabolomic profiling approach for infectious diseases research. Analyst 2011, 136:4752-4763.