OsELF3-1, an ortholog of arabidopsis EARLY FLOWERING 3, regulates rice circadian rhythm and photoperiodic flowering

PLoS ONE

Volumn 7, Issue 8, 2012, Pages

  Zhao, Junming ^a   Huang, Xi ^b,c   Ouyang, Xinhao ^a,c   Chen, Weilan ^a   Du, Anping ^a   Zhu, Ling ^a   Wang, Shiguang ^a   Deng, Xing Wang ^c   Li, Shigui ^a  

^a SICHUAN AGRICULTURAL UNIVERSITY   (China)

^b BEIJING NORMAL UNIVERSITY   (China)

^c PEKING UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARTICLE; CIRCADIAN RHYTHM; CONTROLLED STUDY; EARLY FLOWERING 3 GENE; EARLY HEADING DATE 1 GENE; FLOWERING; GENE EXPRESSION; GENE FUNCTION; GENE REPRESSION; GENETIC ANALYSIS; GHD1 GENE; NONHUMAN; ORTHOLOGY; OSELF3 1 GENE; OSELF3 2 GENE; OSLHY GENE; OSPRR1 GENE; OSPRR37 GENE; OSPRR73 GENE; OSPRR95 GENE; PHOTOPERIODICITY; PLANT GENE; REGULATORY MECHANISM; RICE; SIGNAL TRANSDUCTION;

AMINO ACID SEQUENCE; ARABIDOPSIS PROTEINS; CIRCADIAN RHYTHM; CIRCADIAN RHYTHM SIGNALING PEPTIDES AND PROTEINS; FLOWERS; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; LIGHT; MOLECULAR SEQUENCE DATA; ORYZA SATIVA; PHOTOPERIOD; PLANT LEAVES; PLANT PROTEINS; PROTEIN ISOFORMS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA INTERFERENCE; SEQUENCE HOMOLOGY, AMINO ACID; SIGNAL TRANSDUCTION; TIME FACTORS; TRANSCRIPTION FACTORS;

EID: 84865074246     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0043705     Document Type: Article

References (64)

1. Jiao Y, Ma L, Strickland E, Deng XW, (2005) Conservation and divergence of light-regulated genome expression patterns during seedling development in rice and Arabidopsis. Plant Cell 17: 3239-3256.
2. Izawa T, Oikawa T, Sugiyama N, Tanisaka T, Yano M, et al. (2002) Phytochrome mediates the external light signal to repress FT orthologs in photoperiodic flowering of rice. Genes Dev 16: 2006-2020.
3. Tsuji H, Taoka K, Shimamoto K, (2011) Regulation of flowering in rice: two florigen genes, a complex gene network, and natural variation. Current Opinion in Plant Biology 14: 45-52.
4. Harmer SL, (2009) The circadian system in higher plants. Annual Review of Plant Biology 60: 357-377.
5. Park DH, Somers DE, Kim YS, Choy YH, Lim HK, et al. (1999) Control of circadian rhythms and photoperiodic flowering by the Arabidopsis GIGANTEA gene. Science 285: 1579-1582.
6. Suarez-Lopez P, Wheatley K, Robson F, Onouchi H, Valverde F, et al. (2001) CONSTANS mediates between the circadian clock and the control of flowering in Arabidopsis. Nature 410: 1116-1120.
7. Kardailsky I, Shukla VK, Ahn JH, Dagenais N, Christensen SK, et al. (1999) Activation tagging of the floral inducer FT. Science 286: 1962-1965.
8. Izawa T, (2007) Adaptation of flowering-time by natural and artificial selection in Arabidopsis and rice. Journal of Experimental Botany 58: 3091-3097.
9. Izawa T, (2007) Daylength measurements by rice plants in photoperiodic short-day flowering. Int Rev Cytol 256: 191-222.
10. Hayama R, Yokoi S, Tamaki S, Yano M, Shimamoto K, (2003) Adaptation of photoperiodic control pathways produces short-day flowering in rice. Nature 422: 719-722.
11. Kojima S, Takahashi Y, Kobayashi Y, Monna L, Sasaki T, et al. (2002) Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hd1 under short-day conditions. Plant Cell Physiol 43: 1096-1105.
12. Yano M, Katayose Y, Ashikari M, Yamanouchi U, Monna L, et al. (2000) Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS. Plant Cell 12: 2473-2484.
13. Tamaki S, Matsuo S, Wong HL, Yokoi S, Shimamoto K, (2007) Hd3a protein is a mobile flowering signal in rice. Science 316: 1033-1036.
14. Komiya R, Ikegami A, Tamaki S, Yokoi S, Shimamoto K, (2008) Hd3a and RFT1 are essential for flowering in rice. Development 135: 767-774.
15. Komiya R, Yokoi S, Shimamoto K, (2009) A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice. Development 136: 3443-3450.
16. Doi K, Izawa T, Fuse T, Yamanouchi U, Kubo T, et al. (2004) Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1. Genes Dev 18: 926-936.
17. Xue W, Xing Y, Weng X, Zhao Y, Tang W, et al. (2008) Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice. Nat Genet 40: 761-767.
18. Itoh H, Nonoue Y, Yano M, Izawa T, (2010) A pair of floral regulators sets critical day length for Hd3a florigen expression in rice. Nat Genet 42: 635-638.
19. Matsubara K, Yamanouchi U, Wang ZX, Minobe Y, Izawa T, et al. (2008) Ehd2, a rice ortholog of the maize INDETERMINATE1 gene, promotes flowering by up-regulating Ehd1. Plant Physiol 148: 1425-1435.
20. Matsubara K, Yamanouchi U, Nonoue Y, Sugimoto K, Wang ZX, et al. (2011) Ehd3, encoding a plant homeodomain finger-containing protein, is a critical promoter of rice flowering. Plant J 66: 603-612.
21. Lee J, Lee I, (2010) Regulation and function of SOC1, a flowering pathway integrator. Journal of Experimental Botany 61: 2247-2254.
22. Samach A, Onouchi H, Gold SE, Ditta GS, Schwarz-Sommer Z, et al. (2000) Distinct roles of CONSTANS target genes in reproductive development of Arabidopsis. Science 288: 1613-1616.
23. Seo E, Lee H, Jeon J, Park H, Kim J, et al. (2009) Crosstalk between cold response and flowering in Arabidopsis is mediated through the flowering-time gene SOC1 and its upstream negative regulator FLC. Plant Cell 21: 3185-3197.
24. Lee S, Kim J, Han JJ, Han MJ, An G, (2004) Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO 1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice. Plant J 38: 754-764.
25. Ryu CH, Lee S, Cho LH, Kim SL, Lee YS, et al. (2009) OsMADS50 and OsMADS56 function antagonistically in regulating long day (LD)-dependent flowering in rice. Plant Cell Environ 32: 1412-1427.
26. Zagotta MT, Hicks KA, Jacobs CI, Young JC, Hangarter RP, et al. (1996) The Arabidopsis ELF3 gene regulates vegetative photomorphogenesis and the photoperiodic induction of flowering. Plant J 10: 691-702.
27. Hicks KA, Millar AJ, Carre IA, Somers DE, Straume M, et al. (1996) Conditional circadian dysfunction of the Arabidopsis early-flowering 3 mutant. Science 274: 790-792.
28. McWatters HG, Bastow RM, Hall A, Millar AJ, (2000) The ELF3 zeitnehmer regulates light signalling to the circadian clock. Nature 408: 716-720.
29. Thines B, Harmon FG, (2010) Ambient temperature response establishes ELF3 as a required component of the core Arabidopsis circadian clock. Proc Natl Acad Sci U S A 107: 3257-3262.
30. Strasser B, Alvarez MJ, Califano A, Cerdan PD, (2009) A complementary role for ELF3 and TFL1 in the regulation of flowering time by ambient temperature. Plant J 58: 629-640.
31. Covington MF, Panda S, Liu XL, Strayer CA, Wagner DR, et al. (2001) ELF3 modulates resetting of the circadian clock in Arabidopsis. Plant Cell 13: 1305-1315.
32. Liu XL, Covington MF, Fankhauser C, Chory J, Wagner DR, (2001) ELF3 encodes a circadian clock-regulated nuclear protein that functions in an Arabidopsis PHYB signal transduction pathway. Plant Cell 13: 1293-1304.
33. Herrero E, Kolmos E, Bujdoso N, Yuan Y, Wang M, et al. (2012) EARLY FLOWERING4 Recruitment of EARLY FLOWERING3 in the Nucleus Sustains the Arabidopsis Circadian Clock. Plant Cell.
34. Yu JW, Rubio V, Lee NY, Bai S, Lee SY, et al. (2008) COP1 and ELF3 control circadian function and photoperiodic flowering by regulating GI stability. Mol Cell 32: 617-630.
35. Hazen SP, Schultz TF, Pruneda-Paz JL, Borevitz JO, Ecker JR, et al. (2005) LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms. Proc Natl Acad Sci U S A 102: 10387-10392.
36. Nusinow DA, Helfer A, Hamilton EE, King JJ, Imaizumi T, et al. (2011) The ELF4-ELF3-LUX complex links the circadian clock to diurnal control of hypocotyl growth. Nature 475: 398-402.
37. Murakami M, Tago Y, Yamashino T, Mizuno T, (2007) Comparative overviews of clock-associated genes of Arabidopsis thaliana and Oryza sativa. Plant and Cell Physiology 48: 110-121.
38. Saito H, Ogiso-Tanaka E, Okumoto Y, Yoshitake Y, Izumi H, et al. (2012) Ef7 Encodes an ELF3-like Protein and Promotes Rice Flowering by Negatively Regulating the Floral Repressor Gene Ghd7 under Both Short- and Long-Day Conditions. Plant Cell Physiol 53: 717-728.
39. Matsubara K, Ogiso-Tanaka E, Hori K, Ebana K, Ando T, et al. (2012) Natural Variation in Hd17, a Homolog of Arabidopsis ELF3 That is Involved in Rice Photoperiodic Flowering. Plant Cell Physiol 53: 709-716.
40. Fu C, Yang XO, Chen X, Chen W, Ma Y, et al. (2009) OsEF3, a homologous gene of Arabidopsis ELF3, has pleiotropic effects in rice. Plant Biol (Stuttg) 11: 751-757.
41. Zeevaart JA, (2008) Leaf-produced floral signals. Current Opinion in Plant Biology 11: 541-547.
42. Corbesier L, Vincent C, Jang S, Fornara F, Fan Q, et al. (2007) FT protein movement contributes to long-distance signaling in floral induction of Arabidopsis. Science 316: 1030-1033.
43. Hicks KA, Albertson TM, Wagner DR, (2001) EARLY FLOWERING3 encodes a novel protein that regulates circadian clock function and flowering in Arabidopsis. Plant Cell 13: 1281-1292.
44. Herrero E, Davis SJ, (2012) Time for a Nuclear Meeting: Protein Trafficking and Chromatin Dynamics Intersect in the Plant Circadian System. Mol Plant 5: 28-39.
45. Strayer C, Oyama T, Schultz TF, Raman R, Somers DE, et al. (2000) Cloning of the Arabidopsis clock gene TOC1, an autoregulatory response regulator homolog. Science 289: 768-771.
46. Schaffer R, Ramsay N, Samach A, Corden S, Putterill J, et al. (1998) The late elongated hypocotyl mutation of Arabidopsis disrupts circadian rhythms and the photoperiodic control of flowering. Cell 93: 1219-1229.
47. Wang ZY, Tobin EM, (1998) Constitutive expression of the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) gene disrupts circadian rhythms and suppresses its own expression. Cell 93: 1207-1217.
48. Somers DE, Webb AA, Pearson M, Kay SA, (1998) The short-period mutant, toc1-1, alters circadian clock regulation of multiple outputs throughout development in Arabidopsis thaliana. Development 125: 485-494.
49. Pruneda-Paz JL, Breton G, Para A, Kay SA, (2009) A functional genomics approach reveals CHE as a component of the Arabidopsis circadian clock. Science 323: 1481-1485.
50. Huang W, Perez-Garcia P, Pokhilko A, Millar AJ, Antoshechkin I, et al. (2012) Mapping the core of the Arabidopsis circadian clock defines the network structure of the oscillator. Science 336: 75-79.
51. Gendron JM, Pruneda-Paz JL, Doherty CJ, Gross AM, Kang SE, et al. (2012) Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor. Proc Natl Acad Sci U S A 109: 3167-3172.
52. Dixon LE, Knox K, Kozma-Bognar L, Southern MM, Pokhilko A, et al. (2011) Temporal repression of core circadian genes is mediated through EARLY FLOWERING 3 in Arabidopsis. Curr Biol 21: 120-125.
53. Helfer A, Nusinow DA, Chow BY, Gehrke AR, Bulyk ML, et al. (2011) LUX ARRHYTHMO encodes a nighttime repressor of circadian gene expression in the Arabidopsis core clock. Curr Biol 21: 126-133.
54. Murakami M, Ashikari M, Miura K, Yamashino T, Mizuno T, (2003) The evolutionarily conserved OsPRR quintet: rice pseudo-response regulators implicated in circadian rhythm. Plant Cell Physiol 44: 1229-1236.
55. Kolmos E, Herrero E, Bujdoso N, Millar AJ, Toth R, et al. (2011) A reduced-function allele reveals that EARLY FLOWERING3 repressive action on the circadian clock is modulated by phytochrome signals in Arabidopsis. Plant Cell 23: 3230-3246.
56. Hayama R, Coupland G, (2004) The molecular basis of diversity in the photoperiodic flowering responses of Arabidopsis and rice. Plant Physiol 135: 677-684.
57. Ishikawa R, Tamaki S, Yokoi S, Inagaki N, Shinomura T, et al. (2005) Suppression of the floral activator Hd3a is the principal cause of the night break effect in rice. Plant Cell 17: 3326-3336.
58. Osugi A, Itoh HD, Ikeda-Kawakatsu KD, Takano MD, Izawa T, (2011) Molecular dissection of the roles of phytochrome in photoperiodic flowering in rice. Plant Physiol 157: 1128-1137.
59. Zust T, Joseph B, Shimizu KK, Kliebenstein DJ, Turnbull LA, (2011) A Reduced-Function Allele Reveals That EARLY FLOWERING3 Repressive Action on the Circadian Clock Is Modulated by Phytochrome Signals in Arabidopsis. The plant cell 23: 3230-3246.
60. Reed JW, Nagpal P, Bastow RM, Solomon KS, Dowson-Day MJ, et al. (2000) Independent action of ELF3 and phyB to control hypocotyl elongation and flowering time. Plant Physiol 122: 1149-1160.
61. Jeong DH, An S, Park S, Kang HG, Park GG, et al. (2006) Generation of a flanking sequence-tag database for activation-tagging lines in japonica rice. Plant J 45: 123-132.
62. He C, Lin Z, McElroy D, Wu R, (2009) Identification of a rice actin2 gene regulatory region for high-level expression of transgenes in monocots. Plant Biotechnology Journal 7: 227-239.
63. Hiei Y, Ohta S, Komari T, Kumashiro T, (1994) Efficient transformation of rice (Oryza sativa L.) mediated by Agrobacterium and sequence analysis of the boundaries of the T-DNA. Plant J 6: 271-282.
64. Livak KJ, Schmittgen TD, (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T) Method. Methods 25: 402-408.