The Evolutionarily Conserved OsPRR Quintet: Rice Pseudo-Response Regulators Implicated in Circadian Rhythm

Plant and Cell Physiology

Volumn 44, Issue 11, 2003, Pages 1229-1236

  Murakami, Masaya ^a   Ashikari, Motoyuki ^a   Miura, Kotaro ^a   Yamashino, Takafumi ^a   Mizuno, Takeshi ^a  

^a NAGOYA UNIVERSITY   (Japan)

Author keywords

APRR1 TOC1 quintet; Arabidopsis thaliana; Circadian rhythm; Flowering time; Oryza sativa; Pseudo response regulator

Indexed keywords

AMINO ACID SEQUENCE; CIRCADIAN RHYTHM; EVOLUTION, MOLECULAR; MOLECULAR SEQUENCE DATA; ORYZA SATIVA; SEQUENCE HOMOLOGY, AMINO ACID;

ARABIDOPSIS; ARABIDOPSIS THALIANA; EMBRYOPHYTA; ORYZA SATIVA;

EID: 0347407769     PISSN: 00320781     EISSN: None     Source Type: Journal    
DOI: 10.1093/pcp/pcg135     Document Type: Article

References (45)

1. Alabadi, D., Oyama, T., Yanovsky, M.J., Harmon, F.G., Mas, P. and Kay, S.A. (2001) Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock. Science 293: 880-883.
2. Barak, S., Tobin, E.M., Andronis, C., Sugano, S. and Green, R.M. (2000) All in good time: the Arabidopsis circadian clock. Trends Plant Sci. 5: 517-522.
3. Covington, M.F., Panda, S., Liu, X.L., Strayer, C.A., Wagner, D.R. and Kay, S.A. (2001) ELF3 modulates resetting of the circadian clock in Arabidopsis. Plant Cell 13: 1305-1316.
4. Devlin, P.F. and Kay, S.A. (2001) Circadian photoperception. Annu. Rev. Physiol. 63: 677-694.
5. Dunlap, J.C. (1999) Molecular bases for circadian clocks. Cell 96: 271-290.
6. Eriksson, M.E. and Millar, A.J. (2003) The circadian clock. A plant's best friend in a spinning world. Plant Physiol. 132: 732-738.
7. Green, R.M. and Tobin, E.M. (1999) Loss of the circadian clock-associated protein 1 in Arabidopsis results in altered clock-regulated gene expression. Proc. Natl Acad. Sci. USA 96: 4176-4179.
8. Hayama, R., Izawa, T. and Shimamoto, K. (2002) Isolation of rice genes possibly involved in the photoperiodic control of flowering by a fluorescent differential display method. Plant Cell Physiol. 43: 494-504.
9. Hayama, R., Yokoi, S., Tamaki, S., Yano, M. and Shimamoto, K. (2003) Adaptation of photoperiodic control pathways produces short-day flowering in rice. Nature 422: 719-722.
10. Imamura, A., Hanaki, N., Nakamura, A., Suzuki, T., Taniguchi, M., Kiba, T., Ueguchi, C., Sugiyama, T. and Mizuno, T. (1999) Compilation and characterization of Arabidopsis response regulators implicated in His-to-Asp phosphorelay signal transduction. Plant Cell Physiol. 40: 733-742.
11. Ito, S., Matsushika, A., Yamada, H., Sato, S., Kato, T., Tabata, S., Yamashino, T. and Mizuno, T. (2003) Characterization of the APRR9 pseudo-response regulator belonging to the APRR1/TOC1 quintet in Arabidopsis thaliana. Plant Cell Physiol. 44: 1237-1245.
12. Izawa, T., Oikawa, T., Sugiyama, N., Tanisaka, T., Yano, M. and Shimamoto, K. (2002) Phytochrome mediates the external light signal to repress FT orthologs in photoperiodic flowering of rice. Genes Dev. 16: 2006-2020.
13. Izawa, T., Oikawa, T., Tokutomi, S., Okuno, K. and Shimamoto, K. (2000) Phytochromes confer the photoperiodic control of flowering in rice (a short-day plant). Plant J. 22: 391-399.
14. Izawa, T., Takahashi, Y. and Yano, M. (2003) Comparative biology comes into bloom: genomic and genetic comparison of flowering pathways in rice and Arabidopsis. Curr. Opin. Plant Biol. 6: 113-120.
15. Kojima, S., Takahashi, Y., Kobayashi, Y., Manna, L., Sasaki, T., Araki, T. and Yano, M. (2002) Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hd1 under short-day conditions. Plant Cell Physiol. 43: 1096-1105.
16. Lin, S.Y., Sasaki, T. and Yano, M. (1998) Mapping quantitative trait loci controlling seed dormancy and heading date in rice, Oryza sativa L., using backcross inbred lines. Theor. Appl. Genet. 96: 997-1003.
17. Liu, X.L., Covington, M.F., Fankhouser, C., Chory, J. and Wagner, D.R. (2001) ELF3 encodes a circadian clock-regulated nuclear protein that functions in an Arabidopsis PHYB signal transduction pathway. Plant Cell 13: 1293-1304.
18. Makino, S., Kiba, T., Imamura, A., Hanaki, N., Nakamura, A., Suzuki, T., Taniguchi, M., Ueguchi, C., Sugiyama, T. and Mizuno, T. (2000) Genes encoding pseudo-response regulators: Insight into His-to-Asp phosphorelay and circadian rhythm in Arabidopsis thaliana. Plant Cell Physiol. 41: 791-803.
19. Makino, S., Matsushika, A., Kojima, M., Oda, Y. and Mizuno, T. (2001) Light response of the circadian waves of the APRR1/TOC1 quintet: When does the quintet start singing rhythmically in Arabidopsis? Plant Cell Physiol. 42: 334-339.
20. Makino, S., Matsushika, A., Kojima, M., Yamashino, T. and Mizuno, T. (2002) The APRR1/TOC1 quintet implicated in circadian rhythms of Arabidopsis thaliana: I. Characterization with APRR1-overexpressing plants. Plant Cell Physiol. 43: 58-69.
21. Mas, P., Alabadi, D., Yanovsky, M.J., Oyama, T. and Kay, S.A. (2003) Dual role of TOC1 in the control of arcadian and photomorphogenic responses in Arabidopsis. Plant Cell 15: 223-236.
22. Matsushika, A., Imamura, A., Yamashino, T. and Mizuno, T. (2002b) Aberrant expression of the light-inducible and circadian-regulated APRR9 gene belonging to the circadian-associated APRR1/TOC1 quintet results in the phenotype of early flowering in Arabidopsis thaliana. Plant Cell Physiol. 43: 833-843.
23. Matsushika, A., Makino, S., Kojima, M. and Mizuno, T. (2000) Circadian waves of expression of the APRR1/TOC1 family of pseudo-response regulators: Insight into the plant circadian clock in Arabidopsis thaliana. Plant Cell Physiol. 41: 1002-1012.
24. Matsushika, A., Makino, S., Kojima, M., Yamashino, T. and Mizuno, T. (2002a) The APRR1/TOC1 quintet implicated in circadian rhythms of Arabidopsis thaliana: II. Characterization with CCA1-overexpressing plants. Plant Cell Physiol. 43: 118-122.
25. McClung, C.R. (2000) Circadian rhythms in plants: a millennial view. Physiol. Plant. 109: 359-371.
26. Mizoguchi, T., Wheatley, K, Hanzawa, Y., Wright, L., Mizoguchi, M., Song, H.-R., Carre, I.A. and Coupland, G. (2002) LHY and CCA1 are partially redundant genes required to maintain circadian rhythms in Arabidopsis. Dev. Cell 2: 629-641.
27. Mizuno, T. (1998) His-Asp phosphotransfer signal transduction. J. Biochem. (Tokyo) 123: 555-563.
28. Mouradov, A., Cremer, F. and Coupland, G. (2002) Control of flowering time: Interacting pathways as a basis for diversity. Plant Cell 14: S111-S130.
29. Murakami-Kojima, M., Nakamichi, N., Yamashino, T. and Mizuno, T. (2002) The APRR3 component of the clock-associated APRR1/TOC1 quintet is phosphorylated by a novel protein kinase belonging the WNK family, the gene for which is also transcribed rhythmically in Arabidopsis thaliana. Plant Cell Physiol. 43: 675-683.
30. Nakamichi, N., Matsushika, A., Yamashino, T. and Mizuno, T. (2003) Cell autonomous circadian waves of the APRR1/TOC1 quintet in an established cell line of Arabidopsis thaliana. Plant Cell Physiol. 44: 360-365.
31. Nelson, D.C., Lasswell, J., Rogg, L.E., Cohen, M.A. and Bartel, B. (2000) FKF1, a clock-controlled gene that regulates the transition to flowering in Arabidopsis. Cell 101: 331-340.
32. Sato, E., Nakamichi, N., Yamashino, T. and Mizuno, T. (2002) Aberrant expression of the Arabidopsis circadian-regulated APRR5 gene belonging to the APRR1/TOC1 quintet results in early flowering and hypersensitiveness to light in early photomorphogenesis. Plant Cell Physiol. 43: 1374-1385.
33. Schaffer, R., Ramsay, N., Samach, A., Corden, S., Putterill, J., Carre, I.A. and Coupland, G. (1998) The late elongated hypocotyl mutation of Arabidopsis disrupts circadian rhythms and the photoperiodic control of flowering. Cell 93: 1219-1229.
34. Schultz, T.F., Kiyosue, T., Yanovsky, M., Wada, M. and Kay, S.A. (2001) A role for LKP2 in the circadian clock of Arabidopsis. Plant Cell 13: 2659-2670.
35. Somers, D.E., Webb, A.A.R., Pearson, M. and Kay, S.A. (1998a) The short-period mutant, tocl-1, alters circadian clock regulation of multiple outputs throughout development in Arabidopsis thaliana. Development 125: 485-494.
36. Somers, D.E., Devlin, P.F. and Kay, S.A. (1998b) Phytochromes and cryptochromes in the entrainment of the Arabidopsis circadian clock. Science 282: 1488-1490.
37. Somers, D.E., Schultz, T.F., Milnamow, M., and Kay, S.A. (2000) ZEITLUPE encodes a novel clock-associated PAS protein from Arabidopsis. Cell 101: 319-329.
38. Somers, D.E. (2001) Clock-associated genes in Arabidopsis: a family affair. Phil. Trans. R. Soc. Lond. B 356: 1745-1754.
39. Strayer, C., Oyama, T., Schultz, T.F., Raman, R. Somers, D.E., Mas, P., Panda, S., Kreps, J.A. and Kay, S.A. (2000) Cloning of the Arabidopsis clock gene TOC1, an autoregulatory response regulator homolog. Science 289: 768-771.
40. Takahashi, Y., Shomura, A., Sasaki, T. and Yano, M. (2001) Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the a subunit of protein kinase CK2. Proc. Natl Acad. Sci. USA 98: 7922-7927.
41. Yamashino, T., Matsushika, A., Fujimari, T., Sato, S., Kato, T., Tabata, S. and Mizuno, T. (2003) A link between circadian-controlled bHLH factors and the APRR1/TOC1 quintet in Arabidopsis thaliana. Plant Cell Physiol. 44: 619-629.
42. Yano, M., Katayose, Y., Ashikari, M., Yamanouchi, U., Monna, L., Fuse, T., Baba, T., Yamamoto, K., Umehara, Y., Nagomura, T. and Sasaki, T. (2000) Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS. Plant Cell 12: 2473-2483.
43. Yano, M., Kojima, S., Takahashi, Y., Lin, H.X. and Sasaki, T. (2001) Genetic control of flowering time in rice, a short-day plant. Plant Physiol. 127: 1425-1429.
44. Yanovsky, M.J. and Kay, S.A. (2002) Molecular basis for seasonal time measurement in Arabidopsis. Nature 419: 308-312.
45. Young, M.W. and Kay, S.A. (2001) Time zones: A comparative genetics of circadian clocks. Nat. Rev. Genet. 2: 702-715.