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Volumn 7, Issue 8, 2012, Pages

Calling sample mix-ups in cancer population studies

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BREAST CANCER; CANCER GENETICS; CANCER RESEARCH; CONTROLLED STUDY; DIPLOIDY; ETHNICITY; GENE EXPRESSION; GENOTYPE; HETEROZYGOSITY; HETEROZYGOSITY LOSS; HUMAN; POPULATION RESEARCH; QUANTITATIVE TRAIT LOCUS; SINGLE NUCLEOTIDE POLYMORPHISM; VALIDITY;

EID: 84865011980     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0041815     Document Type: Article
Times cited : (6)

References (27)
  • 1
    • 77951163222 scopus 로고    scopus 로고
    • Deriving chemosensitivity from cell lines: Forensic bioinformatics and reproducible research in high-throughput biology
    • Baggerly KA, Coombes KR, ((2009)) Deriving chemosensitivity from cell lines: Forensic bioinformatics and reproducible research in high-throughput biology. The Annals of Applied Statistics 3:: 1309--1334.
    • (2009) The Annals of Applied Statistics , vol.3 , pp. 1309-1334
    • Baggerly, K.A.1    Coombes, K.R.2
  • 2
    • 79960426031 scopus 로고    scopus 로고
    • MixupMapper: correcting sample mix-ups in genome-wide datasets increases power to detect small genetic effects
    • Westra HJ, Jansen RC, Fehrmann RSN, te Meerman GJ, van Heel D, et al. ((2011)) MixupMapper: correcting sample mix-ups in genome-wide datasets increases power to detect small genetic effects. Bioinformatics 27:: 2104--2111.
    • (2011) Bioinformatics , vol.27 , pp. 2104-2111
    • Westra, H.J.1    Jansen, R.C.2    Fehrmann, R.S.N.3    te Meerman, G.J.4    van Heel, D.5
  • 3
    • 0029812283 scopus 로고    scopus 로고
    • A DNA microarray system for analyzing complex DNA samples using two-color uorescent probe hybridization
    • Shalon D, Smith SJ, Brown PO, ((1996)) A DNA microarray system for analyzing complex DNA samples using two-color uorescent probe hybridization. Genome Res 6:: 639--645.
    • (1996) Genome Res , vol.6 , pp. 639-645
    • Shalon, D.1    Smith, S.J.2    Brown, P.O.3
  • 4
    • 66649131698 scopus 로고    scopus 로고
    • Neurospora crassa mat A-2 and mat A-3 proteins weakly interact in the yeast two-hybrid system and affect yeast growth
    • da Silva C, Cruz R, Bucciarelli-Rodriguez M, Vilas-Boas A, ((2009)) Neurospora crassa mat A-2 and mat A-3 proteins weakly interact in the yeast two-hybrid system and affect yeast growth. Genetics and Molecular Biology 32:: 354--361.
    • (2009) Genetics and Molecular Biology , vol.32 , pp. 354-361
    • da Silva, C.1    Cruz, R.2    Bucciarelli-Rodriguez, M.3    Vilas-Boas, A.4
  • 6
    • 33748053016 scopus 로고    scopus 로고
    • GATA2 is associated with familial early-onset coronary artery disease
    • Connelly JJ, Wang T, Cox J, Haynes C, Wang L, et al. ((2006)) GATA2 is associated with familial early-onset coronary artery disease. PLoS Genet 2:: e139.
    • (2006) PLoS Genet , vol.2
    • Connelly, J.J.1    Wang, T.2    Cox, J.3    Haynes, C.4    Wang, L.5
  • 8
    • 77954041865 scopus 로고    scopus 로고
    • Utilization of AFFX spike-in control probes to monitor sample identity throughout Affymetrix GeneChip Array processing
    • Walter M, Honegger A, Schweizer R, Poths S, Bonin M, ((2010)) Utilization of AFFX spike-in control probes to monitor sample identity throughout Affymetrix GeneChip Array processing. BioTechniques 48:: 371--8.
    • (2010) BioTechniques , vol.48 , pp. 371-378
    • Walter, M.1    Honegger, A.2    Schweizer, R.3    Poths, S.4    Bonin, M.5
  • 9
    • 63449110271 scopus 로고    scopus 로고
    • High quality copy number and genotype data from FFPE samples using Molecular Inversion Probe (MIP) microarrays
    • Wang Y, Carlton VEH, Karlin-Neumann G, Sapolsky R, Zhang L, et al. ((2009)) High quality copy number and genotype data from FFPE samples using Molecular Inversion Probe (MIP) microarrays. BMC Medical Genomics 2:: 8.
    • (2009) BMC Medical Genomics , vol.2 , pp. 8
    • Wang, Y.1    Carlton, V.E.H.2    Karlin-Neumann, G.3    Sapolsky, R.4    Zhang, L.5
  • 10
    • 84969213492 scopus 로고    scopus 로고
    • Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
    • The Wellcome Trust Case Control Consortium
    • The Wellcome Trust Case Control Consortium, ((2007)) Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Nature 447:: 661--678.
    • (2007) Nature , vol.447 , pp. 661-678
  • 11
    • 4043128071 scopus 로고    scopus 로고
    • Genetic analysis of genomewide variation in human gene expression
    • Morley M, Molony CM, Weber TM, Devlin JL, Ewens KG, et al. ((2004)) Genetic analysis of genomewide variation in human gene expression. Nature 430:: 743--747.
    • (2004) Nature , vol.430 , pp. 743-747
    • Morley, M.1    Molony, C.M.2    Weber, T.M.3    Devlin, J.L.4    Ewens, K.G.5
  • 12
    • 79952256739 scopus 로고    scopus 로고
    • The architecture of gene regulatory variation across multiple human tissues: The MuTHER study
    • Nica AC, Parts L, Glass D, Nisbet J, Barrett A, et al. ((2011)) The architecture of gene regulatory variation across multiple human tissues: The MuTHER study. PLoS Genet 7:: e1002003.
    • (2011) PLoS Genet , vol.7
    • Nica, A.C.1    Parts, L.2    Glass, D.3    Nisbet, J.4    Barrett, A.5
  • 13
    • 84860329478 scopus 로고    scopus 로고
    • Bayesian method to predict individual SNP genotypes from gene expression data
    • Schadt EE, Woo S, Hao K, ((2012)) Bayesian method to predict individual SNP genotypes from gene expression data. Nature Genetics 44:: 603--608.
    • (2012) Nature Genetics , vol.44 , pp. 603-608
    • Schadt, E.E.1    Woo, S.2    Hao, K.3
  • 14
    • 84876422058 scopus 로고    scopus 로고
    • The genomic and transcriptomic architecture of 2,000 breast tumours
    • Curtis C, Shah SP, Chin S, Turashvili G, Reuda O, et al. ((2012)) The genomic and transcriptomic architecture of 2,000 breast tumours. Nature 486:: 346352.
    • (2012) Nature , vol.486 , pp. 346352
    • Curtis, C.1    Shah, S.P.2    Chin, S.3    Turashvili, G.4    Reuda, O.5
  • 15
    • 79961135005 scopus 로고    scopus 로고
    • R Development Core Team,R Foundation for Statistical Computing, Vienna, Austria,ISBN 3-900051-07-0
    • R Development Core Team (2011) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria. URL http://www.R-project.org/. ISBN 3-900051-07-0.
    • (2011) R: A Language and Environment for Statistical Computing
  • 16
    • 33846978695 scopus 로고    scopus 로고
    • Relative impact of nucleotide and copy number variation on gene expression phenotypes
    • Stranger BE, Forrest MS, Dunning M, Ingle CE, Beazley C, et al. ((2007)) Relative impact of nucleotide and copy number variation on gene expression phenotypes. Science (New York, NY) 315:: 848--53.
    • (2007) Science (New York, NY) , vol.315 , pp. 848-853
    • Stranger, B.E.1    Forrest, M.S.2    Dunning, M.3    Ingle, C.E.4    Beazley, C.5
  • 18
    • 79959524146 scopus 로고    scopus 로고
    • A haplotype map of the human genome
    • The International HapMap Consortium
    • The International HapMap Consortium, ((2005)) A haplotype map of the human genome. Nature 437:: 1299--320.
    • (2005) Nature , vol.437 , pp. 1299-1320
  • 19
    • 48349090298 scopus 로고    scopus 로고
    • Effect of polymorphisms within probe-target sequences on olignonucleotide microarray experiments
    • Benovoy D, Kwan T, Majewski J, ((2008)) Effect of polymorphisms within probe-target sequences on olignonucleotide microarray experiments. Nucleic Acids Research 36:: 4417--4423.
    • (2008) Nucleic Acids Research , vol.36 , pp. 4417-4423
    • Benovoy, D.1    Kwan, T.2    Majewski, J.3
  • 23
    • 58849106627 scopus 로고    scopus 로고
    • Identification of common genetic variants that account for transcript isoform variation between human populations
    • Zhang W, Duan S, Bleibel WK, Wisel SA, Huang RS, et al. ((2009)) Identification of common genetic variants that account for transcript isoform variation between human populations. Hum Genet 125:: 81--93.
    • (2009) Hum Genet , vol.125 , pp. 81-93
    • Zhang, W.1    Duan, S.2    Bleibel, W.K.3    Wisel, S.A.4    Huang, R.S.5
  • 24
    • 58849162410 scopus 로고    scopus 로고
    • SNPinProbe 1.0: A database for filtering out probes in the Affymetrix GeneChip R Human Exon 1.0 ST array potentially affected by SNPs
    • Duan S, Zhang W, Bleibel WK, Cox NJ, Dolan ME, ((2008)) SNPinProbe 1.0: A database for filtering out probes in the Affymetrix GeneChip R Human Exon 1.0 ST array potentially affected by SNPs. Bioinformation 2:: 469--470.
    • (2008) Bioinformation , vol.2 , pp. 469-470
    • Duan, S.1    Zhang, W.2    Bleibel, W.K.3    Cox, N.J.4    Dolan, M.E.5
  • 26
    • 77956637896 scopus 로고    scopus 로고
    • Genetics and beyond - the transcriptome of human monocytes and disease susceptibility
    • Zeller T, Wild P, Szymczak S, Rotival M, Schillert A, et al. ((2010)) Genetics and beyond - the transcriptome of human monocytes and disease susceptibility. PLoS ONE 5:: e10693.
    • (2010) PLoS ONE , vol.5
    • Zeller, T.1    Wild, P.2    Szymczak, S.3    Rotival, M.4    Schillert, A.5
  • 27
    • 84876424777 scopus 로고    scopus 로고
    • Leisch F (2002) Sweave: Dynamic generation of statistical reports using literate data analysis. In: Härdle W, Rönz B, editors, Compstat 2002- Proceedings in Computational Statistics. Physica Verlag, Heidelberg, 575-580. ISBN 3-7908-1517-9.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.