-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
DOI 10.1093/nar/25.17.3389
-
Altschul SF, et al. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402. (Pubitemid 27359211)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
66249091224
-
Revised Mimivirus major capsid protein sequence reveals intron-containing gene structure and extra domain
-
Azza S, Cambillau C, Raoult D, Suzan-Monti M. 2009. Revised Mimivirus major capsid protein sequence reveals intron-containing gene structure and extra domain. BMC Mol Biol. 10:39.
-
(2009)
BMC Mol Biol.
, vol.10
, pp. 39
-
-
Azza, S.1
Cambillau, C.2
Raoult, D.3
Suzan-Monti, M.4
-
3
-
-
67649957511
-
The polyadenylation site of Mimivirus transcripts obeys a stringent 'hairpin rule'
-
Byrne D, et al. 2009. The polyadenylation site of Mimivirus transcripts obeys a stringent 'hairpin rule'. Genome Res. 19:1233-1242.
-
(2009)
Genome Res.
, vol.19
, pp. 1233-1242
-
-
Byrne, D.1
-
4
-
-
77953710766
-
Gene repertoire of amoeba-associated giant viruses
-
Colson P, Raoult D. 2010. Gene repertoire of amoeba-associated giant viruses. Intervirology. 53:330-343.
-
(2010)
Intervirology.
, vol.53
, pp. 330-343
-
-
Colson, P.1
Raoult, D.2
-
5
-
-
84873054511
-
RNAZ 2.0: Improved noncoding RNA detection
-
Gruber AR, Findeiß S, Washietl S, Hofacker IL, Stadler PF. 2010. RNAZ 2.0: Improved noncoding RNA detection. Pac Symp Biocomput. 15:69-79.
-
(2010)
Pac Symp Biocomput.
, vol.15
, pp. 69-79
-
-
Gruber, A.R.1
Findeiß, S.2
Washietl, S.3
Hofacker, I.L.4
Stadler, P.F.5
-
7
-
-
0035167322
-
Common origin of four diverse families of large eukaryotic DNA viruses
-
DOI 10.1128/JVI.75.23.11720-11734.2001
-
Iyer LM, Aravind L, Koonin EV. 2001. Common origin of four diverse families of large eukaryotic DNA viruses. J Virol. 75:11720-11734. (Pubitemid 33063263)
-
(2001)
Journal of Virology
, vol.75
, Issue.23
, pp. 11720-11734
-
-
Iyer, L.M.1
Aravind, L.2
Koonin, E.V.3
-
8
-
-
33645076499
-
Evolutionary geno-mics of nucleo-cytoplasmic large DNA viruses
-
Iyer LM, Balaji S, Koonin EV, Aravind L. 2006. Evolutionary geno-mics of nucleo-cytoplasmic large DNA viruses. Virus Res. 117:156-184.
-
(2006)
Virus Res.
, vol.117
, pp. 156-184
-
-
Iyer, L.M.1
Balaji, S.2
Koonin, E.V.3
Aravind, L.4
-
9
-
-
13444259388
-
TREEFINDER: A powerful graphical analysis environment for molecular phylogenetics
-
Jobb G, von Haeseler A, Strimmer K. 2004. TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evol Biol. 4:18.
-
(2004)
BMC Evol Biol.
, vol.4
, pp. 18
-
-
Jobb, G.1
Von Haeseler, A.2
Strimmer, K.3
-
10
-
-
77953692396
-
Origin and evolution of eukaryotic large nucleo-cytoplasmic DNA viruses
-
Koonin EV, Yutin N. 2010. Origin and evolution of eukaryotic large nucleo-cytoplasmic DNA viruses. Intervirology 53:284-292.
-
(2010)
Intervirology
, vol.53
, pp. 284-292
-
-
Koonin, E.V.1
Yutin, N.2
-
11
-
-
77953695716
-
Tentative characterization of new environmental giant viruses by MALDI-TOF mass spectrometry
-
La Scola B, et al. 2010. Tentative characterization of new environmental giant viruses by MALDI-TOF mass spectrometry. Intervirology 53:344-353.
-
(2010)
Intervirology
, vol.53
, pp. 344-353
-
-
La Scola, B.1
-
12
-
-
51349125147
-
The virophage as a unique parasite of the giant mimivirus
-
La Scola B, et al. 2008. The virophage as a unique parasite of the giant mimivirus. Nature 455:100-104.
-
(2008)
Nature
, vol.455
, pp. 100-104
-
-
La Scola, B.1
-
13
-
-
77951857386
-
MRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus
-
Legendre M, et al. 2010. mRNA deep sequencing reveals 75 new genes and a complex transcriptional landscape in Mimivirus. Genome Res. 20:664-674.
-
(2010)
Genome Res.
, vol.20
, pp. 664-674
-
-
Legendre, M.1
-
14
-
-
79952196873
-
Breaking the 1000-gene barrier for Mimivirus using ultra-deep genome and transcriptome sequencing
-
Legendre M, Santini S, Rico A, Abergel C, Claverie JM. 2011. Breaking the 1000-gene barrier for Mimivirus using ultra-deep genome and transcriptome sequencing. Virol J. 8:99.
-
(2011)
Virol J.
, vol.8
, pp. 99
-
-
Legendre, M.1
Santini, S.2
Rico, A.3
Abergel, C.4
Claverie, J.M.5
-
15
-
-
3242887157
-
CD-Search: Protein domain annotations on the fly
-
DOI 10.1093/nar/gkh454
-
Marchler-Bauer A, Bryant SH. 2004. CD-Search: protein domain annotations on the fly. Nucleic Acids Res. 32:W327-W331. (Pubitemid 38997352)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.WEB SERVER ISS.
-
-
Marchler-Bauer, A.1
Bryant, S.H.2
-
16
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
DOI 10.1038/nature03959, PII N03959
-
Margulies M, et al. 2005. Genome sequencing in microfabricated high-density picolitre reactors. Nature 437:376-380. (Pubitemid 41613494)
-
(2005)
Nature
, vol.437
, Issue.7057
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
Bemben, L.A.6
Berka, J.7
Braverman, M.S.8
Chen, Y.-J.9
Chen, Z.10
Dewell, S.B.11
Du, L.12
Fierro, J.M.13
Gomes, X.V.14
Godwin, B.C.15
He, W.16
Helgesen, S.17
Ho, C.H.18
Irzyk, G.P.19
Jando, S.C.20
Alenquer, M.L.I.21
Jarvie, T.P.22
Jirage, K.B.23
Kim, J.-B.24
Knight, J.R.25
Lanza, J.R.26
Leamon, J.H.27
Lefkowitz, S.M.28
Lei, M.29
Li, J.30
Lohman, K.L.31
Lu, H.32
Makhijani, V.B.33
McDade, K.E.34
McKenna, M.P.35
Myers, E.W.36
Nickerson, E.37
Nobile, J.R.38
Plant, R.39
Puc, B.P.40
Ronan, M.T.41
Roth, G.T.42
Sarkis, G.J.43
Simons, J.F.44
Simpson, J.W.45
Srinivasan, M.46
Tartaro, K.R.47
Tomasz, A.48
Vogt, K.A.49
Volkmer, G.A.50
Wang, S.H.51
Wang, Y.52
Weiner, M.P.53
Yu, P.54
Begley, R.F.55
Rothberg, J.M.56
more..
-
17
-
-
48249105419
-
Taxonomic distribution of large DNA viruses in the sea
-
Monier A, Claverie JM, Ogata H. 2008. Taxonomic distribution of large DNA viruses in the sea. Genome Biol. 9:R106.
-
(2008)
Genome Biol.
, vol.9
-
-
Monier, A.1
Claverie, J.M.2
Ogata, H.3
-
18
-
-
12244289248
-
OWEN: Aligning long collinear regions of genomes
-
DOI 10.1093/bioinformatics/18.12.1703
-
Ogurtsov AY, Roytberg MA, Shabalina SA, Kondrashov AS. 2002. OWEN: aligning long collinear regions of genomes. Bioinformatics 18:1703-1704. (Pubitemid 36097743)
-
(2002)
Bioinformatics
, vol.18
, Issue.12
, pp. 1703-1704
-
-
Ogurtsov, A.Y.1
Roytberg, M.A.2
Shabalina, S.A.3
Kondrashov, A.S.4
-
19
-
-
33745611784
-
Analysis of internal loops within the RNA secondary structure in almost quadratic time
-
DOI 10.1093/bioinformatics/btl083
-
Ogurtsov AY, Shabalina SA, Kondrashov AS, Roytberg MA. 2006. Analysis of internal loops within the RNA secondary structure in almost quadratic time. Bioinformatics 22:1317-1324. (Pubitemid 43985267)
-
(2006)
Bioinformatics
, vol.22
, Issue.11
, pp. 1317-1324
-
-
Ogurtsov, A.Y.1
Shabalina, S.A.2
Kondrashov, A.S.3
Roytberg, M.A.4
-
20
-
-
8844266097
-
The 1.2-megabase genome sequence of Mimivirus
-
DOI 10.1126/science.1101485
-
Raoult D, et al. 2004. The 1.2-megabase genome sequence of Mimivirus. Science 306:1344-1350. (Pubitemid 39532506)
-
(2004)
Science
, vol.306
, Issue.5700
, pp. 1344-1350
-
-
Raoult, D.1
Audic, S.2
Robert, C.3
Abergel, C.4
Renesto, P.5
Ogata, H.6
La Scola, B.7
Suzan, M.8
Claverie, J.-M.9
-
21
-
-
0030851338
-
The genome of molluscum contagiosum virus: Analysis and comparison with other poxviruses
-
DOI 10.1006/viro.1997.8607
-
Senkevich TG, Koonin EV, Bugert JJ, Darai G, Moss B. 1997. The genome of molluscum contagiosum virus: analysis and comparison with other poxviruses. Virology 233:19-42. (Pubitemid 27348765)
-
(1997)
Virology
, vol.233
, Issue.1
, pp. 19-42
-
-
Senkevich, T.G.1
Koonin, E.V.2
Bugert, J.J.3
Darai, G.4
Moss, B.5
-
22
-
-
51449085579
-
Origins and evolution of eukaryotic RNA interference
-
Shabalina SA, Koonin EV. 2008. Origins and evolution of eukaryotic RNA interference. Trends Ecol Evol. 23:578-587.
-
(2008)
Trends Ecol Evol.
, vol.23
, pp. 578-587
-
-
Shabalina, S.A.1
Koonin, E.V.2
-
23
-
-
74549213613
-
Evolution of DNA ligases of nucleo-cytoplasmic large DNA viruses of eukaryotes: A case of hidden complexity
-
Yutin N, Koonin EV. 2009. Evolution of DNA ligases of nucleo-cytoplasmic large DNA viruses of eukaryotes: a case of hidden complexity. Biol Direct. 4:51.
-
(2009)
Biol Direct.
, vol.4
, pp. 51
-
-
Yutin, N.1
Koonin, E.V.2
-
24
-
-
74549198854
-
Eukaryotic large nucleo-cytoplasmic DNA viruses: Clusters of orthologous genes and reconstruction of viral genome evolution
-
Yutin N, Wolf YI, Raoult D, Koonin EV. 2009. Eukaryotic large nucleo-cytoplasmic DNA viruses: clusters of orthologous genes and reconstruction of viral genome evolution. Virol J. 6:223.
-
(2009)
Virol J.
, vol.6
, pp. 223
-
-
Yutin, N.1
Wolf, Y.I.2
Raoult, D.3
Koonin, E.V.4
|