Reactive oxygen species in the signaling and adaptation of multicellular microbial communities

Oxidative Medicine and Cellular Longevity

Volumn , Issue , 2012, Pages

  Čáp, Michal ^a   Váchová, Libuše ^a,b   Palková, Zdena ^a  

^a CHARLES UNIVERSITY   (Czech Republic)

^b INSTITUTE OF MICROBIOLOGY   (Czech Republic)

Author keywords

[No Author keywords available]

Indexed keywords

BIOFILMS; CELL DEATH; MICROORGANISMS; MOLECULES; PHYSIOLOGY; SIGNALING; YEAST;

BIOFILM DEVELOPMENT; MICROBIAL COMMUNITIES; MICROBIAL STRUCTURES; MULTICELLULAR STRUCTURE; PROGRAMMED CELL DEATHS; QUORUM SENSING MOLECULES; REACTIVE OXYGEN SPECIES; REGULATORY FUNCTIONS;

CELL SIGNALING;

AMMONIA; FARNESOL; REACTIVE OXYGEN METABOLITE;

ADAPTATION; APOPTOSIS; BACILLUS SUBTILIS; BIOFILM; CANDIDA ALBICANS; CAULOBACTER CRESCENTUS; CHROMOBACTERIUM VIOLACEUM; DEFENSE MECHANISM; ENTEROCOCCUS FAECALIS; FUNGAL COLONIZATION; GENETIC VARIABILITY; HOMEOSTASIS; INTRACELLULAR SIGNALING; LISTERIA MONOCYTOGENES; MICROBIAL COMMUNITY; NONHUMAN; OXIDATIVE STRESS; PSEUDOMONAS AERUGINOSA; QUORUM SENSING; REVIEW; SACCHAROMYCES CEREVISIAE; STAPHYLOCOCCUS EPIDERMIDIS;

EID: 84864929433     PISSN: 19420900     EISSN: 19420994     Source Type: Journal    
DOI: 10.1155/2012/976753     Document Type: Review

References (136)

1. Hall-Stoodley L., Costerton J. W., Stoodley P., Bacterial biofilms: from the natural environment to infectious diseases Nature Reviews Microbiology 2004 2 2 95 108 (Pubitemid 39490064)
2. Annesley S. J., Fisher P. R., Dictyostelium discoideum a model for many reasons Molecular and Cellular Biochemistry 2009 329 1-2 73 91
3. Velicer G. J., Vos M., Sociobiology of the myxobacteria Annual Review of Microbiology 2009 63 599 623
4. Elias S., Banin E., Multi-species biofilms: living with friendly neighbors. FEMS Microbiology Reviews. In press
5. Palkov Z., Vchov L., Life within a community: benefit to yeast long-term survival FEMS Microbiology Reviews 2006 30 5 806 824
6. Lpez D., Vlamakis H., Kolter R., Biofilms Cold Spring Harbor Perspectives in Biology 2010 2 7
7. Anderson G. G., O'Toole G. A., Innate and induced resistance mechanisms of bacterial biofilms Current Topics in Microbiology and Immunology 2008 322 85 105
8. Hall-Stoodley L., Stoodley P., Evolving concepts in biofilm infections Cellular Microbiology 2009 11 7 1034 1043
9. Hiby N., Bjarnsholt T., Givskov M., Molin S., Ciofu O., Antibiotic resistance of bacterial biofilms International Journal of Antimicrobial Agents 2010 35 4 322 332
10. Lewis K., Multidrug tolerance of biofilms and persister cells Current Topics in Microbiology and Immunology 2008 322 107 131
11. Pan Y., Mitochondria, reactive oxygen species, and chronological aging: a message from yeast Experimental Gerontology 2011 46 11 847 852
12. Ristow M., Schmeisser S., Extending life span by increasing oxidative stress Free Radical Biology and Medicine 2011 51 2 327 336
13. Finkel T., Signal transduction by reactive oxygen species Journal of Cell Biology 2011 194 1 7 15
14. Mittler R., Vanderauwera S., Suzuki N., Miller G., Tognetti V. B., Vandepoele K., Gollery M., Shulaev V., Van Breusegem F., ROS signaling: the new wave? Trends in Plant Science 2011 16 6 300 309
15. Scott B., Eaton C. J., Role of reactive oxygen species in fungal cellular differentiations Current Opinion in Microbiology 2008 11 6 488 493
16. Torres M. A., ROS in biotic interactions Physiologia Plantarum 2010 138 4 414 429
17. Lalucque H., Silar P., NADPH oxidase: an enzyme for multicellularity? Trends in Microbiology 2003 11 1 9 12 (Pubitemid 36084349)
18. Cap M., Stepanek L., Harant K., Vachova L., Palkova Z., Cell differentiation within a yeast colony: metabolic and regulatory parallels with a tumor-affected organism Molecular Cell 2012 46 4 436 448
19. Vchov L., Palkov Z., Yeast colony survival depends on metabolic adaptation and cell differentiation rather than on stress defense Journal of Biological Chemistry 2009 284 47 32572 32581
20. Piccirillo S., White M. G., Murphy J. C., Law D. J., Honigberg S. M., The Rim101p/PacC pathway and alkaline pH regulate pattern formation in yeast colonies Genetics 2010 184 3 707 716
21. Vchov L., Chernyavskiy O., Strachotov D., Bianchini P., Burdkov Z., Ferkov I., Kubnov L., Palkov Z., Architecture of developing multicellular yeast colony: spatio-temporal expression of Ato1p ammonium exporter Environmental Microbiology 2009 11 7 1866 1877
22. Vchov L., Kuerov H., Devaux F., lehlov M., Palkov Z., Metabolic diversification of cells during the development of yeast colonies Environmental Microbiology 2009 11 2 494 504
23. t'ovek V., Vchov L., Kuthan M., Palkov Z., General factors important for the formation of structured biofilm-like yeast colonies Fungal Genetics and Biology 2010 47 12 1012 1022
24. Vchov L., tov V., Hlavek O., Chernyavskiy O., tpnek L., Kubnov L., Palkov Z., Flo11p, drug efflux pumps, and the extracellular matrix cooperate to form biofilm yeast colonies Journal of Cell Biology 2011 194 5 679 687
25. Palkova Z., Janderova B., Gabriel J., Zikanova B., Pospisek M., Forstova J., Ammonia mediates communication between yeast colonies Nature 1997 390 6659 532 536 (Pubitemid 28013137)
26. Palkov Z., Forstov J., Yeast colonies synchronise their growth and development Journal of Cell Science 2000 113 11 1923 1928
27. Palkov Z., Devaux F., iicov M., Minrikov L., Le Crom S., Jacq C., Ammonia pulses and metabolic oscillations guide yeast colony development Molecular Biology of the Cell 2002 13 11 3901 3914 (Pubitemid 35398558)
28. Gasch A. P., Werner-Washburne M., The genomics of yeast responses to environmental stress and starvation Functional and Integrative Genomics 2002 2 4-5 181 192 (Pubitemid 41449152)
29. Vchov L., Palkov Z., Physiological regulation of yeast cell death in multicellular colonies is triggered by ammonia Journal of Cell Biology 2005 169 5 711 717
30. Vchov L., Devaux F., Kuerov H., iicov M., Jacq C., Palkov Z., Sok2p transcription factor is involved in adaptive program relevant for long term survival of Saccharomyces cerevisiae colonies Journal of Biological Chemistry 2004 279 36 37973 37981 (Pubitemid 39195513)
31. Gresham D., Boer V. M., Caudy A., Ziv N., Brandt N. J., Storey J. D., Botstein D., System-level analysis of genes and functions affecting survival during nutrient starvation in Saccharomyces cerevisiae Genetics 2011 187 1 299 317
32. Petti A. A., Crutchfield C. A., Rabinowitz J. D., Botstein D., Survival of starving yeast is correlated with oxidative stress response and nonrespiratory mitochondrial function Proceedings of the National Academy of Sciences of the United States of America 2011 108 45 E1089 E1098
33. Wu J., Zhang N., Hayes A., Panoutsopoulo K., Oliver S. G., Global analysis of nutrient control of gene expression in Saccharomyces cerevisiae during growth and starvation Proceedings of the National Academy of Sciences of the United States of America 2004 101 9 3148 3153 (Pubitemid 38327749)
34. Liu X. F., Elashvili I., Gralla E. B., Valentine J. S., Lapinskas P., Culotta V. C., Yeast lacking superoxide dismutase. Isolation of genetic suppressors Journal of Biological Chemistry 1992 267 26 18298 18302
35. Longo V. D., Gralla E. B., Valentine J. S., Superoxide dismutase activity is essential for stationary phase survival in Saccharomyces cerevisiae: mitochondrial production of toxic oxygen species in vivo Journal of Biological Chemistry 1996 271 21 12275 12280 (Pubitemid 26160890)
36. Jensen L. T., Sanchez R. J., Srinivasan C., Valentine J. S., Culotta V. C., Mutations in Saccharomyces cerevisiae iron-sulfur cluster assembly genes and oxidative stress relevant to Cu,Zn superoxide dismutase Journal of Biological Chemistry 2004 279 29 29938 29943 (Pubitemid 38937913)
37. Lapinskas P. J., Cunningham K. W., Liu X. F., Fink G. R., Culotta V. C., Mutations in PMR1 suppress oxidative damage in yeast cells lacking superoxide dismutase Molecular and Cellular Biology 1995 15 3 1382 1388
38. Izawa S., Inoue Y., Kimura A., Importance of catalase in the adaptive response to hydrogen peroxide: analysis of acatalasaemic Saccharomyces cerevisiae Biochemical Journal 1996 320 61 67 (Pubitemid 26400161)
39. Schuller C., Brewster J. L., Alexander M. R., Gustin M. C., Ruis H., The HOG pathway controls osmotic regulation of transcription via the stress response element (STRE) of the Saccharomyces cerevisiaeCTT1 gene The EMBO Journal 1994 13 18 4382 4389 (Pubitemid 24295210)
40. Mesquita A., Weinberger M., Silva A., Sampaio-Marques B., Almeida B., Leo C., Costa V., Rodrigues F., Burhans W. C., Ludovico P., Caloric restriction or catalase inactivation extends yeast chronological lifespan by inducing H 2 O 2 and superoxide dismutase activity Proceedings of the National Academy of Sciences of the United States of America 2010 107 34 15123 15128
41. Cap M., Vachova L., Palkova Z., How to survive within a yeast colony? Change metabolism or cope with stress? Communicative and Integrative Biology 2010 3 198 200
42. Hill B. G., Bhatnagar A., Protein S-glutathiolation: redox-sensitive regulation of protein function Journal of Molecular and Cellular Cardiology 2012 52 559 567
43. Nulton-Persson A. C., Szweda L. I., Modulation of mitochondrial function by hydrogen peroxide Journal of Biological Chemistry 2001 276 26 23357 23361
44. Temple M. D., Perrone G. G., Dawes I. W., Complex cellular responses to reactive oxygen species Trends in Cell Biology 2005 15 6 319 326 (Pubitemid 40805328)
45. Pan Y., Schroeder E. A., Ocampo A., Barrientos A., Shadel G. S., Regulation of yeast chronological life span by TORC1 via adaptive mitochondrial ROS signaling Cell Metabolism 2011 13 6 668 678
46. Karachitos A., Galganska H., Wojtkowska M., Budzinska M., Stobienia O., Bartosz G., Kmita H., Cu,Zn-superoxide dismutase is necessary for proper function of VDAC in Saccharomyces cerevisiae cells FEBS Letters 2009 583 2 449 455
47. Lemasters J. J., Holmuhamedov E., Voltage-dependent anion channel (VDAC) as mitochondrial governatorthinking outside the box Biochimica et Biophysica Acta 2006 1762 2 181 190 (Pubitemid 43006024)
48. Galganska H., Budzinska M., Wojtkowska M., Kmita H., Redox regulation of protein expression in Saccharomyces cerevisiae mitochondria: possible role of VDAC Archives of Biochemistry and Biophysics 2008 479 1 39 45
49. Han D., Antunes F., Canali R., Rettori D., Cadenas E., Voltage-dependent anion channels control the release of the superoxide anion from mitochondria to cytosol Journal of Biological Chemistry 2003 278 8 5557 5563 (Pubitemid 36800797)
50. Sehati S., Clement M. H. S., Martins J., Xu L., Longo V. D., Valentine J. S., Gralla E. B., Metabolic alterations in yeast lacking copper-zinc superoxide dismutase Free Radical Biology and Medicine 2011 50 11 1591 1598
51. Bonatto D., A systems biology analysis of protein-protein interactions between yeast superoxide dismutases and DNA repair pathways Free Radical Biology and Medicine 2007 43 4 557 567 (Pubitemid 47058235)
52. Bttner S., Eisenberg T., Herker E., Carmona-Gutierrez D., Kroemer G., Madeo F., Why yeast cells can undergo apoptosis: death in times of peace, love, and war Journal of Cell Biology 2006 175 4 521 525 (Pubitemid 44790604)
53. Carmona-Gutierrez D., Eisenberg T., Bttner S., Meisinger C., Kroemer G., Madeo F., Apoptosis in yeast: triggers, pathways, subroutines Cell Death and Differentiation 2010 17 5 763 773
54. Gourlay C. W., Du W., Ayscough K. R., Apoptosis in yeastmechanisms and benefits to a unicellular organism Molecular Microbiology 2006 62 6 1515 1521 (Pubitemid 44813800)
55. Madeo F., Carmona-Gutierrez D., Ring J., Bttner S., Eisenberg T., Kroemer G., Caspase-dependent and caspase-independent cell death pathways in yeast Biochemical and Biophysical Research Communications 2009 382 2 227 231
56. Fabrizio P., Battistella L., Vardavas R., Gattazzo C., Liou L. L., Diaspro A., Dossen J. W., Gralla E. B., Longo V. D., Superoxide is a mediator of an altruistic aging program in Saccharomyces cerevisiae Journal of Cell Biology 2004 166 7 1055 1067 (Pubitemid 39304768)
57. Yeater K. M., Chandra J., Cheng G., Mukherjee P. K., Zhao X., Rodriguez-Zas S. L., Kwast K. E., Gannoum M. A., Hoyer L. L., Temporal analysis of Candida albicans gene expression during biofilm development Microbiology 2007 153 8 2373 2385 (Pubitemid 47262027)
58. Seneviratne C. J., Wang Y., Jin L., Abiko Y., Samaranayake L. P., Candida albicans biofilm formation is associated with increased anti-oxidative capacities Proteomics 2008 8 14 2936 2947
59. Younes S., Bahnan W., Dimassi H. I., Khalaf R. A., The Candida albicans Hwp2 is necessary for proper adhesion, biofilm formation and oxidative stress tolerance Microbiological Research 2011 166 5 430 436
60. Brown A. J., Haynes K., Quinn J., Nitrosative and oxidative stress responses in fungal pathogenicity Current Opinion in Microbiology 2009 12 4 384 391
61. Vandenbosch D., Braeckmans K., Nelis H. J., Coenye T., Fungicidal activity of miconazole against Candida spp. biofilms Journal of Antimicrobial Chemotherapy 2010 65 4 694 700
62. Hornby J. M., Jensen E. C., Lisec A. D., Tasto J. J., Jahnke B., Shoemaker R., Dussault P., Nickerson K. W., Quorum sensing in the dimorphic fungus Candida albicans is mediated by farnesol Applied and Environmental Microbiology 2001 67 7 2982 2992 (Pubitemid 33644762)
63. Davis-Hanna A., Piispanen A. E., Stateva L. I., Hogan D. A., Farnesol and dodecanol effects on the Candida albicans Ras1-cAMP signalling pathway and the regulation of morphogenesis Molecular Microbiology 2008 67 1 47 62 (Pubitemid 350231134)
64. Ramage G., Saville S. P., Wickes B. L., Lpez-Ribot J. L., Inhibition of Candida albicans biofilm formation by farnesol, a quorum-sensing molecule Applied and Environmental Microbiology 2002 68 11 5459 5463 (Pubitemid 35265681)
65. Shirtliff M. E., Krom B. P., Meijering R. A. M., Peters B. M., Zhu J., Scheper M. A., Harris M. L., Jabra-Rizk M. A., Farnesol-induced apoptosis in Candida albicans Antimicrobial Agents and Chemotherapy 2009 53 6 2392 2401
66. Deveau A., Piispanen A. E., Jackson A. A., Hogan D. A., Farnesol induces hydrogen peroxide resistance in Candida albicans yeast by inhibiting the Ras-cyclic AMP signaling pathway Eukaryotic Cell 2010 9 4 569 577
67. Westwater C., Balish E., Schofield D. A., Candida albicans -conditioned medium protects yeast cells from oxidative stress: a possible link between quorum sensing and oxidative stress resistance Eukaryotic Cell 2005 4 10 1654 1661 (Pubitemid 41484225)
68. Jamieson D. J., Stephen D. W. S., Terrire E. C., Analysis of the adaptive oxidative stress response of Candida albicans FEMS Microbiology Letters 1996 138 1 83 88 (Pubitemid 26184502)
69. Nasution O., Srinivasa K., Kim M., Kim Y. J., Kim W., Jeong W., Choi W., Hydrogen peroxide induces hyphal differentiation in Candida albicans Eukaryotic Cell 2008 7 11 2008 2011
70. Lu H., Zhu Z., Dong L., Jia X., Sun X., Yan L., Chai Y., Jiang Y., Cao Y., Lack of trehalose accelerates H 2 O 2 -induced Candida albicans apoptosis through regulating Ca 2+ signaling pathway and caspase activity PLoS ONE 2011 6 1
71. Phillips A. J., Sudbery I., Ramsdale M., Apoptosis induced by environmental stresses and amphotericin B in Candida albicans Proceedings of the National Academy of Sciences of the United States of America 2003 100 2 14327 14332 (Pubitemid 37499236)
72. Dantas A. D. S., Patterson M. J., Smith D. A., MacCallum D. M., Erwig L. P., Morgan B. A., Quinn J., Thioredoxin regulates multiple hydrogen peroxide-induced signaling pathways in Candida albicans Molecular and Cellular Biology 2010 30 19 4550 4563
73. Smith D. A., Nicholls S., Morgan B. A., Brown A. J. P., Quinn J., A conserved stress-activated protein kinase regulates a core stress response in the human pathogen Candida albicans Molecular Biology of the Cell 2004 15 9 4179 4190 (Pubitemid 39122021)
74. Zhang X., De Micheli M., Coleman S. T., Sanglard D., Moye-Rowley W. S., Analysis of the oxidative stress regulation of the Candida albicans transcription factor, Cap1p Molecular Microbiology 2000 36 3 618 629 (Pubitemid 30258846)
75. Cugini C., Morales D. K., Hogan D. A., Candida albicans -produced farnesol stimulates Pseudomonas quinolone signal production in LasR-defective Pseudomonas aeruginosa strains Microbiology 2010 156 10 3096 3107
76. Semighini C. P., Hornby J. M., Dumitru R., Nickerson K. W., Harris S. D., Farnesol-induced apoptosis in Aspergillus nidulans reveals a possible mechanism for antagonistic interactions between fungi Molecular Microbiology 2006 59 3 753 764
77. Machida K., Tanaka T., Fujita K. I., Taniguchi M., Farnesol-induced generation of reactive oxygen species via indirect inhibition of the mitochondrial electron transport chain in the yeast Saccharomyces cerevisiae Journal of Bacteriology 1998 180 17 4460 4465 (Pubitemid 28405569)
78. Schmitt M. J., Breinig F., Yeast viral killer toxins: lethality and self-protection Nature Reviews 2006 4 3 212 221
79. Karatan E., Watnick P., Signals, regulatory networks, and materials that build and break bacterial biofilms Microbiology and Molecular Biology Reviews 2009 73 2 310 347
80. Lee J. H., Lee J., Indole as an intercellular signal in microbial communities FEMS Microbiology Reviews 2010 34 4 426 444
81. Ng W. L., Bassler B. L., Bacterial quorum-sensing network architectures Annual Review of Genetics 2009 43 197 222
82. Wortham B. W., Patel C. N., Oliveira M. A., Polyamines in bacteria: pleiotropic effects yet specific mechanisms Advances in Experimental Medicine and Biology 2007 603 106 115
83. Allegrucci M., Sauer K., Characterization of colony morphology variants isolated from S treptococcus pneumoniae biofilms Journal of Bacteriology 2007 189 5 2030 2038 (Pubitemid 46446166)
84. Boles B. R., Thoendel M., Singh P. K., Self-generated diversity produces insurance effects in biofilm communities Proceedings of the National Academy of Sciences of the United States of America 2004 101 47 16630 16635 (Pubitemid 39557764)
85. Déziel E., Comeau Y., Villemur R., Initiation of biofilm formation by Pseudomonas aeruginosa 57RP correlates with emergence of hyperpiliated and highly adherent phenotypic variants deficient in swimming, swarming, and twitching motilities Journal of Bacteriology 2001 183 4 1195 1204 (Pubitemid 32107715)
86. Yarwood J. M., Paquette K. M., Tikh U. B., Volper E. M., Greenberg E. P., Generation of virulence factor variants in Staphylococcus aureus biofilms Journal of Bacteriology 2007 189 22 7961 7967 (Pubitemid 350178905)
87. van der Veen S., Abee T., Generation of variants in Listeria monocytogenes continuous-flow biofilms is dependent on radical-induced DNA damage and RecA-mediated repair PLoS ONE 2011 6
88. Regev-Yochay G., Trzcinski K., Thompson C. M., Lipsitch M., Malley R., SpxB is a suicide gene of Streptococcus pneumoniae and confers a selective advantage in an in vivo competitive colonization model Journal of Bacteriology 2007 189 18 6532 6539 (Pubitemid 47397358)
89. Kreth J., Vu H., Zhang Y., Herzberg M. C., Characterization of hydrogen peroxide-induced DNA release by Streptococcus sanguinis and Streptococcus gordonii Journal of Bacteriology 2009 191 20 6281 6291
90. Itzek A., Zheng L., Chen Z., Merritt J., Kreth J., Hydrogen peroxide-dependent DNA release and transfer of antibiotic resistance genes in Streptococcus gordonii Journal of Bacteriology 2011 193 6912 6922
91. Harmsen M., Lappann M., Knchel S., Molin S., Role of extracellular DNA during biofilm formation by listeria monocytogenes Applied and Environmental Microbiology 2010 76 7 2271 2279
92. Lappann M., Claus H., van Alen T., Harmsen M., Elias J., Molin S., Vogel U., A dual role of extracellular DNA during biofilm formation of Neisseria meningitidis Molecular Microbiology 2010 75 6 1355 1371
93. Rice K. C., Mann E. E., Endres J. L., Weiss E. C., Cassat J. E., Smeltzer M. S., Bayles K. W., The cidA murein hydrolase regulator contributes to DNA release and biofilm development in Staphylococcus aureus Proceedings of the National Academy of Sciences of the United States of America 2007 104 19 8113 8118 (Pubitemid 47185884)
94. Thomas V. C., Hiromasa Y., Harms N., Thurlow L., Tomich J., Hancock L. E., A fratricidal mechanism is responsible for eDNA release and contributes to biofilm development of Enterococcus faecalis Molecular Microbiology 2009 72 4 1022 1036
95. Whitchurch C. B., Tolker-Nielsen T., Ragas P. C., Mattick J. S., Extracellular DNA required for bacterial biofilm formation Science 2002 295 5559
96. Li Y. H., Lau P. C. Y., Lee J. H., Ellen R. P., Cvitkovitch D. G., Natural genetic transformation of streptococcus mutans growing in biofilms Journal of Bacteriology 2001 183 3 897 908 (Pubitemid 32097974)
97. Henle E. S., Linn S., Formation, prevention, and repair of DNA damage by iron/hydrogen peroxide Journal of Biological Chemistry 1997 272 31 19095 19098 (Pubitemid 27337692)
98. Zheng L., Chen Z., Itzek A., Ashby M., Kreth J., Catabolite control protein a controls hydrogen peroxide production and cell death in streptococcus sanguinis Journal of Bacteriology 2011 193 2 516 526
99. Mai-Prochnow A., Lucas-Elio P., Egan S., Thomas T., Webb J. S., Sanchez-Amat A., Kjelleberg S., Hydrogen peroxide linked to lysine oxidase activity facilitates biofilm differentiation and dispersal in several gram-negative bacteria Journal of Bacteriology 2008 190 15 5493 5501
100. Mai-Prochnow A., Webb J. S., Ferrari B. C., Kjelleberg S., Ecological advantages of autolysis during the development and dispersal of Pseudoalteromonas tunicata biofilms Applied and Environmental Microbiology 2006 72 8 5414 5420
101. Barraud N., Hassett D. J., Hwang S. H., Rice S. A., Kjelleberg S., Webb J. S., Involvement of nitric oxide in biofilm dispersal of Pseudomonas aeruginosa Journal of Bacteriology 2006 188 21 7344 7353 (Pubitemid 44646233)
102. Borriello G., Werner E., Roe F., Kim A. M., Ehrlich G. D., Stewart P. S., Oxygen limitation contributes to antibiotic tolerance of Pseudomonas aeruginosa in biofilms Antimicrobial Agents and Chemotherapy 2004 48 7 2659 2664 (Pubitemid 38823439)
103. Werner E., Roe F., Bugnicourt A., Franklin M. J., Heydorn A., Molin S., Pitts B., Stewart P. S., Stratified growth in Pseudomonas aeruginosa biofilms Applied and Environmental Microbiology 2004 70 10 6188 6196 (Pubitemid 39471869)
104. Kovacic P., Unifying mechanism for bacterial cell signalers (4,5-dihydroxy-2,3-pentanedione, lactones and oligopeptides): electron transfer and reactive oxygen species. Practical medical features Medical Hypotheses 2007 69 5 1105 1110 (Pubitemid 47430211)
105. Abee T., Kovacs A. T., Kuipers O. P., van der Veen S., Biofilm formation and dispersal in Gram-positive bacteria Current Opinion in Biotechnology 2011 22 2 172 179
106. Rothfork J. M., Timmins G. S., Harris M. N., Chen X., Lusis A. J., Otto M., Cheung A. L., Gresham H. D., Inactivation of a bacterial virulence pheromone by phagocyte-derived oxidants: new role for the NADPH oxidase in host defense Proceedings of the National Academy of Sciences of the United States of America 2004 101 38 13867 13872 (Pubitemid 39298499)
107. Ohsawa T., Tsukahara K., Sato T., Ogura M., Superoxide stress decreases expression of srfA through inhibition of transcription of the comQXP quorum-sensing locus in Bacillus subtilis Journal of Biochemistry 2006 139 2 203 211
108. Frey R. L., He L., Cui Y., Decho A. W., Kawaguchi T., Ferguson P. L., Ferry J. L., Reaction of N -acylhomoserine lactones with hydroxyl radicals: rates, products, and effects on signaling activity Environmental Science and Technology 2010 44 19 7465 7469
109. Hassett D. J., Ma J. F., Elkins J. G., McDermott T. R., Ochsner U. A., West S. E. H., Huang C. T., Fredericks J., Burnett S., Stewart P. S., McFeters G., Passador L., Iglewski B. H., Quorum sensing in Pseudomonas aeruginosa controls expression of catalase and superoxide dismutase genes and mediates biofilm susceptibility to hydrogen peroxide Molecular Microbiology 1999 34 5 1082 1093 (Pubitemid 30000324)
110. Joelsson A., Kan B., Zhu J., Quorum sensing enhances the stress response in Vibrio cholerae Applied and Environmental Microbiology 2007 73 11 3742 3746 (Pubitemid 46871468)
111. Pontes M. H., Babst M., Lochhead R., Oakeson K., Smith K., Dale C., Quorum sensing primes the oxidative stress response in the insect endosymbiont, Sodalis glossinidius PLoS ONE 2008 3 10
112. Uzureau S., Lemaire J., Delaive E., Dieu M., Gaigneaux A., Raes M., De Bolle X., Letesson J. J., Global analysis of quorum sensing targets in the intracellular pathogen Brucella melitensis 16M Journal of Proteome Research 2010 9 6 3200 3217
113. Srivastava M., Mallard C., Barke T., Hancock L. E., Self W. T., A selenium-dependent xanthine dehydrogenase triggers biofilm proliferation in Enterococcus faecalis through oxidant production Journal of Bacteriology 2011 193 7 1643 1652
114. Ramsey M. M., Whiteley M., Polymicrobial interactions stimulate resistance to host innate immunity through metabolite perception Proceedings of the National Academy of Sciences of the United States of America 2009 106 5 1578 1583
115. Domka J., Lee J., Wood T. K., YliH (BssR) and YceP (BssS) regulate Escherichia coli K-12 biofilm formation by influencing cell signaling Applied and Environmental Microbiology 2006 72 4 2449 2459
116. Lee J., Jayaraman A., Wood T. K., Indole is an inter-species biofilm signal mediated by SdiA BMC Microbiology 2007 7, article no. 42
117. Ren D., Bedzyk L. A., Thomas S. M., Ye R. W., Wood T. K., Gene expression in Escherichia coli biofilms Applied Microbiology and Biotechnology 2004 64 4 515 524 (Pubitemid 38686161)
118. Zheng M., Wang X., Templeton L. J., Smulski D. R., LaRossa R. A., Storz G., DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide Journal of Bacteriology 2001 183 15 4562 4570 (Pubitemid 32646006)
119. Garbe T. R., Kobayashi M., Yukawa H., Indole-inducible proteins in bacteria suggest membrane and oxidant toxicity Archives of Microbiology 2000 173 1 78 82 (Pubitemid 30060685)
120. Kuczyska-Winik D., Matuszewska E., Furmanek-Blaszk B., Leszczyska D., Grudowska A., Szczepaniak P., Laskowska E., Antibiotics promoting oxidative stress inhibit formation of Escherichia coli biofilm via indole signalling Research in Microbiology 2010 161 10 847 853
121. Di Martino P., Fursy R., Bret L., Sundararaju B., Phillips R. S., Indole can act as an extracellular signal to regulate biofilm formation of Escherichia coli and other indole-producing bacteria Canadian Journal of Microbiology 2003 49 7 443 449 (Pubitemid 37421752)
122. Bitoun J. P., Nguyen A. H., Fan Y., Burne R. A., Wen Z. T., Transcriptional repressor Rex is involved in regulation of oxidative stress response and biofilm formation by Streptococcus mutans FEMS Microbiology Letters 2011 320 2 110 117
123. Wen Z. T., Suntharaligham P., Cvitkovitch D. G., Burne R. A., Trigger factor in Streptococcus mutans is involved in stress tolerance, competence development, and biofilm formation Infection and Immunity 2005 73 1 219 225 (Pubitemid 40041112)
124. Hodges A. P., Dai D., Xiang Z., Woolf P., Xi C., He Y., Bayesian network expansion identifies new ROS and biofilm regulators PLoS ONE 2010 5 3
125. Fields J. A., Thompson S. A., Campylobacter jejuni CsrA mediates oxidative stress responses, biofilm formation, and host cell invasion Journal of Bacteriology 2008 190 9 3411 3416 (Pubitemid 351581440)
126. Yan Q., Wang N., The ColR/ColS two-component system plays multiple roles in the pathogenicity of the citrus canker pathogen Xanthomonas citri subsp. citri Journal of Bacteriology 2011 193 7 1590 1599
127. Choi K. S., Veeraragouda Y., Cho K., Kyoung M. C., Soo O. L., Geuk R. J., Lee K., Effect of gacS and gacA mutations on colony architecture, surface motility, biofilm formation and chemical toxicity in Pseudomonas sp. KL28 Journal of Microbiology 2007 45 6 492 498
128. Paget M. S. B., Buttner M. J., Thiol-based regulatory switches Annual Review of Genetics 2003 37 91 121 (Pubitemid 38041422)
129. Danese P. N., Pratt L. A., Dove S. L., Kolter R., The outer membrane protein, antigen 43, mediates cell-to-cell interactions within Escherichia coli biofilms Molecular Microbiology 2000 37 2 424 432 (Pubitemid 30481024)
130. Hennequin C., Forestier C., OxyR, a LysR-type regulator involved in Klebsiella pneumoniae mucosal and abiotic colonization Infection and Immunity 2009 77 12 5449 5457
131. Shanks R. M. Q., Stella N. A., Kalivoda E. J., Doe M. R., O'Dee D. M., Lathrop K. L., Feng L. G., Nau G. J., A Serratia marcescens OxyR homolog mediates surface attachment and biofilm formation Journal of Bacteriology 2007 189 20 7262 7272 (Pubitemid 47557340)
132. Honma K., Mishima E., Inagaki S., Sharma A., The OxyR homologue in Tannerella forsythia regulates expression of oxidative stress responses and biofilm formation Microbiology 2009 155 6 1912 1922
133. Seib K. L., Wu H. J., Srikhanta Y. N., Edwards J. L., Falsetta M. L., Hamilton A. J., Maguire T. L., Grimmond S. M., Apicella M. A., McEwan A. G., Jennings M. P., Characterization of the OxyR regulon of Neisseria gonorrhoeae Molecular Microbiology 2007 63 1 54 68 (Pubitemid 44968109)
134. Albesa I., Becerra M. C., Battn P. C., Pez P. L., Oxidative stress involved in the antibacterial action of different antibiotics Biochemical and Biophysical Research Communications 2004 317 2 605 609 (Pubitemid 38452525)
135. Dwyer D. J., Kohanski M. A., Collins J. J., Role of reactive oxygen species in antibiotic action and resistance Current Opinion in Microbiology 2009 12 5 482 489
136. Kohanski M. A., Dwyer D. J., Hayete B., Lawrence C. A., Collins J. J., A common mechanism of cellular death induced by bactericidal antibiotics Cell 2007 130 5 797 810 (Pubitemid 47332566)