메뉴 건너뛰기




Volumn 1, Issue 2, 2011, Pages 138-148

Analysis of evolutionary novelty of tumor-specifically expressed sequences

Author keywords

Evolutionarily new gene; tumor specific transcripts; tumors and evolution

Indexed keywords

ARTICLE; COMPARATIVE GENOMIC HYBRIDIZATION; EVOLUTIONARY HOMOLOGY; GENE EXPRESSION; GENE SEQUENCE; HUMAN; MAMMAL; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PRIMATE; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; TUMOR GENE;

EID: 84864760259     PISSN: 20790597     EISSN: 20790600     Source Type: Journal    
DOI: 10.1134/S2079059711020080     Document Type: Article
Times cited : (6)

References (43)
  • 1
    • 0024367305 scopus 로고
    • Determining the Upper Limit of Expression of the Rat Genome
    • Evtushenko, V. I., Khanson, K. P., Barabitskaya, O. V., et al., Determining the Upper Limit of Expression of the Rat Genome, Mol. Biol., 1989, vol. 23, no. 3, pp. 663-675.
    • (1989) Mol. Biol. , vol.23 , Issue.3 , pp. 663-675
    • Evtushenko, V.I.1    Khanson, K.P.2    Barabitskaya, O.V.3
  • 2
    • 84904147669 scopus 로고
    • Regulatory Mechanisms as an Expression and Result of the Evolution of Competitive Relations Between Genes
    • Leningrad: Akad. Nauk SSSR
    • Kozlov, A. P., Regulatory Mechanisms as an Expression and Result of the Evolution of Competitive Relations Between Genes, in Solenostnye adaptatsii vodnykh organizmov (Salinity Adaptation of Aquatic Organisms), Leningrad: Akad. Nauk SSSR, 1976.
    • (1976) Solenostnye Adaptatsii Vodnykh Organizmov (Salinity Adaptation of Aquatic Organisms)
    • Kozlov, A.P.1
  • 4
    • 27044447522 scopus 로고
    • Gene Competition and the Possible Evolutionary Role of Tumors and Cellular Oncogenes
    • E. V. Presnov, E. V. Maresin, and A. I. Zotin (Eds.), Moscow: Nauka
    • Kozlov, A. P., Gene Competition and the Possible Evolutionary Role of Tumors and Cellular Oncogenes, in Teoreticheskie i matematicheskie aspekty morfogeneza (Theoretical and Mathematical Aspects of Morphogenesis), Presnov, E. V., Maresin, E. V., and Zotin, A. I., Eds., Moscow: Nauka, 1987, pp. 136-140.
    • (1987) Teoreticheskie I Matematicheskie Aspekty Morfogeneza (Theoretical and Mathematical Aspects of Morphogenesis) , pp. 136-140
    • Kozlov, A.P.1
  • 6
    • 59849121706 scopus 로고    scopus 로고
    • Tumors and Evolution
    • Kozlov, A. P., Tumors and Evolution, Vopr. Onkol., 2008, vol. 54, no. 6, pp. 695-705.
    • (2008) Vopr. Onkol. , vol.54 , Issue.6 , pp. 695-705
    • Kozlov, A.P.1
  • 7
    • 0021116807 scopus 로고
    • Common Evolutionary Origin of the Fibrin-Binding Structures of Fibronectin and Tissue-Type Plasminogen Activator
    • Banyani, L., Varadi, A., and Patthy, L., Common Evolutionary Origin of the Fibrin-Binding Structures of Fibronectin and Tissue-Type Plasminogen Activator, FEBS Lett., 1983, vol. 163, p. 37.
    • (1983) FEBS Lett. , vol.163 , pp. 37
    • Banyani, L.1    Varadi, A.2    Patthy, L.3
  • 8
    • 0035834430 scopus 로고    scopus 로고
    • In Silico Screening for Tumour-Specific Expressed Sequences in Human Genome
    • Baranova, A. V., Lobashev, A. V., et al., In Silico Screening for Tumour-Specific Expressed Sequences in Human Genome, FEBS Lett., 2001, vol. 508, pp. 143-148.
    • (2001) FEBS Lett. , vol.508 , pp. 143-148
    • Baranova, A.V.1    Lobashev, A.V.2
  • 9
    • 33645241471 scopus 로고    scopus 로고
    • Recently Evolved Genes Identified from Drosophila yakuba and D. erecta Accessory Gland Expressed Sequence Tags
    • Begun, D. J., Lindfors, H. A., Thompson, M. E., and Holloway, A. K., Recently Evolved Genes Identified from Drosophila yakuba and D. erecta Accessory Gland Expressed Sequence Tags, Genetics, 2006, vol. 172, no. 3, pp. 1675-1681.
    • (2006) Genetics , vol.172 , Issue.3 , pp. 1675-1681
    • Begun, D.J.1    Lindfors, H.A.2    Thompson, M.E.3    Holloway, A.K.4
  • 10
    • 34250748633 scopus 로고    scopus 로고
    • Evidence for de novo Evolution of Testis-Expressed Genes in the Drosophila yakuba/Drosophila erecta Clade
    • Begun, D. J., Lindfors, H. A., Kern, A. D., and Jones, C. D., Evidence for de novo Evolution of Testis-Expressed Genes in the Drosophila yakuba/Drosophila erecta Clade, Genetics, 2007, vol. 176, no. 2, pp. 1131-1137.
    • (2007) Genetics , vol.176 , Issue.2 , pp. 1131-1137
    • Begun, D.J.1    Lindfors, H.A.2    Kern, A.D.3    Jones, C.D.4
  • 11
    • 0242300065 scopus 로고    scopus 로고
    • Genome-Wide Screening for Fusogenic Human Endogenous Retrovirus Envelopes Identifies Syncytin 2, a Gene Conserved on Primate Evolution
    • Blaise, S., de Parseval, N., Benit, L., and Heidmann, T., Genome-Wide Screening for Fusogenic Human Endogenous Retrovirus Envelopes Identifies Syncytin 2, a Gene Conserved on Primate Evolution, Proc. Natl. Acad. Sci. USA, 2003, vol. 1000, no. 22, pp. 13013-13018.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.1000 , Issue.22 , pp. 13013-13018
    • Blaise, S.1    de Parseval, N.2    Benit, L.3    Heidmann, T.4
  • 12
    • 0029563023 scopus 로고
    • A Method for Estimating the Numbers of Synonymous and Nonsynonymous Substitutions per Site
    • Comeron, J. M., A Method for Estimating the Numbers of Synonymous and Nonsynonymous Substitutions per Site, J. Mol. Evol., 1995, vol. 41, no. 6, pp. 1152-1159.
    • (1995) J. Mol. Evol. , vol.41 , Issue.6 , pp. 1152-1159
    • Comeron, J.M.1
  • 13
    • 0032825011 scopus 로고    scopus 로고
    • K-Estimator: Calculation of the Number of Nucleotide Substitutions Per Site and the Confidence Intervals
    • Comeron, J. M., K-Estimator: Calculation of the Number of Nucleotide Substitutions Per Site and the Confidence Intervals, Bioinformatics, 1999, vol. 9, pp. 763-764.
    • (1999) Bioinformatics , vol.9 , pp. 763-764
    • Comeron, J.M.1
  • 14
    • 0022003075 scopus 로고
    • The Genealogy of Some Recently Evolved Vertebrate Proteins
    • Doolittle, R. F., The Genealogy of Some Recently Evolved Vertebrate Proteins, Trends Biochem. Sci., 1985, vol. 10, p. 233.
    • (1985) Trends Biochem. Sci. , vol.10 , pp. 233
    • Doolittle, R.F.1
  • 15
    • 0024367305 scopus 로고
    • Determination of the Upper Limit of the Value for Rat Genome Expression
    • Evtushenko, V. J., Khanson, K. P., Barabitskala, O. V., et al., Determination of the Upper Limit of the Value for Rat Genome Expression, Mol. Biol., 1989, vol. 23, no. 3, pp. 663-675.
    • (1989) Mol. Biol. , vol.23 , Issue.3 , pp. 663-675
    • Evtushenko, V.J.1    Khanson, K.P.2    Barabitskala, O.V.3
  • 16
    • 0034126348 scopus 로고    scopus 로고
    • Brachyury Is Expressed by Human Teratocarcinoma Cells in the Absence of Mesodermal Differentiation
    • Gokhale, P. J., Giesberts, A. M., and Andrews, P. W., Brachyury Is Expressed by Human Teratocarcinoma Cells in the Absence of Mesodermal Differentiation, Cell Growth. Differ, 2000, vol. 11, no. 3, pp. 157-162.
    • (2000) Cell Growth. Differ , vol.11 , Issue.3 , pp. 157-162
    • Gokhale, P.J.1    Giesberts, A.M.2    Andrews, P.W.3
  • 17
    • 35348925443 scopus 로고    scopus 로고
    • Amplification of PVT1 Contributes to the Pathophysiology of Ovarian and Breast Cancer
    • Guan, Y., Kuo, W. L., Stilwell, J. L., et al., Amplification of PVT1 Contributes to the Pathophysiology of Ovarian and Breast Cancer, Clin. Cancer Res., 2007, vol. 13, no. 19, pp. 5745-5755.
    • (2007) Clin. Cancer Res. , vol.13 , Issue.19 , pp. 5745-5755
    • Guan, Y.1    Kuo, W.L.2    Stilwell, J.L.3
  • 18
    • 18544404720 scopus 로고    scopus 로고
    • Covariation in Frequencies of Substitution, Deletion, Transposition, and Recombination during Eutherian Evolution
    • Hardison, R. C., Roskin, K. M., Yang, S., et al., Covariation in Frequencies of Substitution, Deletion, Transposition, and Recombination during Eutherian Evolution, Genome Res., 2003, vol. 13, no. 1, pp. 13-26.
    • (2003) Genome Res. , vol.13 , Issue.1 , pp. 13-26
    • Hardison, R.C.1    Roskin, K.M.2    Yang, S.3
  • 20
    • 33750092367 scopus 로고    scopus 로고
    • Smad-Sp1 Complexes Mediate TGFbeta-Induced Early Transcription of Oncogenic Smad7 in Pancreatic Cancer Cells
    • Jungert, K., Buck, A., Buchholz, M., et al., Smad-Sp1 Complexes Mediate TGFbeta-Induced Early Transcription of Oncogenic Smad7 in Pancreatic Cancer Cells, Carcinogenesis, 2006, vol. 27, no. 12, pp. 2392-2401.
    • (2006) Carcinogenesis , vol.27 , Issue.12 , pp. 2392-2401
    • Jungert, K.1    Buck, A.2    Buchholz, M.3
  • 21
    • 33751277288 scopus 로고    scopus 로고
    • Loss of Kruppel-Like Factor4 Expression Contributes to Sp1 Overexpression and Human Gastric Cancer Development and Progression
    • Kanai, M., Wei, D., Li, Q., et al., Loss of Kruppel-Like Factor4 Expression Contributes to Sp1 Overexpression and Human Gastric Cancer Development and Progression, Clin. Cancer Res., 2006, vol. 12, no. 21, pp. 6395-6402.
    • (2006) Clin. Cancer Res. , vol.12 , Issue.21 , pp. 6395-6402
    • Kanai, M.1    Wei, D.2    Li, Q.3
  • 22
    • 34250160256 scopus 로고    scopus 로고
    • RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription
    • Kapranov, P., Cheng, J., Dike, S., et al., RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription, Science, 2007, vol. 316, no. 5830, pp. 1484-1488.
    • (2007) Science , vol.316 , Issue.5830 , pp. 1484-1488
    • Kapranov, P.1    Cheng, J.2    Dike, S.3
  • 23
    • 0019296687 scopus 로고
    • A Simple Method for Estimating Evolutionary Rates of Base Substitutions through Comparative Studies of Nucleotide-Sequences
    • Kimura, M., A Simple Method for Estimating Evolutionary Rates of Base Substitutions through Comparative Studies of Nucleotide-Sequences, J. Mol. Evol., 1980, vol. 16, no. 2, pp. 111-120.
    • (1980) J. Mol. Evol. , vol.16 , Issue.2 , pp. 111-120
    • Kimura, M.1
  • 24
    • 0031019401 scopus 로고    scopus 로고
    • Genomic Structure and Evolution of a Novel Gene (PLA2L) with Duplicated Phospholipase A2-Like Domains
    • Kowalski, P. E., Freeman, J. D., Nelson, D. T., and Mager, D. L., Genomic Structure and Evolution of a Novel Gene (PLA2L) with Duplicated Phospholipase A2-Like Domains, Genomics, 1997, vol. 39, no. 1, pp. 38-46.
    • (1997) Genomics , vol.39 , Issue.1 , pp. 38-46
    • Kowalski, P.E.1    Freeman, J.D.2    Nelson, D.T.3    Mager, D.L.4
  • 27
    • 17244374873 scopus 로고    scopus 로고
    • Experimental Study of Human Expressed Sequences Newly Identified in silico as Tumour Specific
    • Krukovskaja, L. L., Baranova, A. V., Tyezelova, T., et al., Experimental Study of Human Expressed Sequences Newly Identified in silico as Tumour Specific, Tumour Biol., 2005, vol. 26, pp. 17-24.
    • (2005) Tumour Biol. , vol.26 , pp. 17-24
    • Krukovskaja, L.L.1    Baranova, A.V.2    Tyezelova, T.3
  • 28
    • 0018677995 scopus 로고
    • Evolution of Living Organisms as a Multilevel Process
    • Kozlov, A. P., Evolution of Living Organisms as a Multilevel Process, J. Theor. Biol., 1979, vol. 81, pp. 1-17.
    • (1979) J. Theor. Biol. , vol.81 , pp. 1-17
    • Kozlov, A.P.1
  • 29
    • 0030003681 scopus 로고    scopus 로고
    • Gene Competition and the Possible Evolutionary Role of Tumours
    • Kozlov, A. P., Gene Competition and the Possible Evolutionary Role of Tumours, Medical Hypotheses, 1996, vol. 46, pp. 81-84.
    • (1996) Medical Hypotheses , vol.46 , pp. 81-84
    • Kozlov, A.P.1
  • 30
    • 0001344758 scopus 로고
    • The Origin of Chromatin Deficiencies as Minute Deletions Subject to Insertion Elsewhere
    • Mutter, H. J., The Origin of Chromatin Deficiencies as Minute Deletions Subject to Insertion Elsewhere, Genetics, 1935, vol. 17, pp. 237-252.
    • (1935) Genetics , vol.17 , pp. 237-252
    • Mutter, H.J.1
  • 32
    • 7944225987 scopus 로고    scopus 로고
    • Expression Analyses of Human Endogenous Retroviruses (HERVs): Tissue-Specific and Developmental Stage-Dependent Expression of HERVs
    • Okahara, G., Matsubara, S., Oda, T., et al., Expression Analyses of Human Endogenous Retroviruses (HERVs): Tissue-Specific and Developmental Stage-Dependent Expression of HERVs, Genomics, 2004, vol. 84, no. 6, pp. 982-990.
    • (2004) Genomics , vol.84 , Issue.6 , pp. 982-990
    • Okahara, G.1    Matsubara, S.2    Oda, T.3
  • 33
    • 34247887629 scopus 로고    scopus 로고
    • The Human T-Box Mesodermal Transcription Factor Brachyury Is a Candidate Target for T-Cell-Mediated Cancer Immunotherapy
    • Palena, C., Polev, D. E., Tsang, K. Y., et al., The Human T-Box Mesodermal Transcription Factor Brachyury Is a Candidate Target for T-Cell-Mediated Cancer Immunotherapy, Clin. Cancer Res., 2007, vol. 13, no. 8, pp. 2471-2478.
    • (2007) Clin. Cancer Res. , vol.13 , Issue.8 , pp. 2471-2478
    • Palena, C.1    Polev, D.E.2    Tsang, K.Y.3
  • 34
    • 0022102222 scopus 로고
    • Evolution of the Proteases of Blood ñCoagulation and Fibrinolysis by Assembly from Modules
    • Patthy, L., Evolution of the Proteases of Blood ñCoagulation and Fibrinolysis by Assembly from Modules, Cell, 1985, vol. 41, p. 657.
    • (1985) Cell , vol.41 , pp. 657
    • Patthy, L.1
  • 35
    • 33646272409 scopus 로고    scopus 로고
    • Identification and Classification of Conserved RNA Secondary Structures in the Human Genome
    • Pedersen, J. S., Bejerano, G., Siepel, A., et al., Identification and Classification of Conserved RNA Secondary Structures in the Human Genome, PLoS Comput. Biol., 2006, vol. 2, no. 4, pp. 33-38.
    • (2006) PLoS Comput. Biol. , vol.2 , Issue.4 , pp. 33-38
    • Pedersen, J.S.1    Bejerano, G.2    Siepel, A.3
  • 36
    • 34250857552 scopus 로고    scopus 로고
    • Genomics DNA Study Forces Rethink of What It Means To Be a Gene
    • Pennisi, E., Genomics DNA Study Forces Rethink of What It Means To Be a Gene, Science, 2007, vol. 316, no. 5831, pp. 1556-1557.
    • (2007) Science , vol.316 , Issue.5831 , pp. 1556-1557
    • Pennisi, E.1
  • 37
    • 0032544338 scopus 로고    scopus 로고
    • AP-1 and Ets Transcription Factors Regulate the Expression of the Human SPRR1A Keratinocyte Terminal Differentiation Marker
    • Sark, M. W., Fischer, D. F., de Meijer, E., et al., AP-1 and Ets Transcription Factors Regulate the Expression of the Human SPRR1A Keratinocyte Terminal Differentiation Marker, J. Biol. Chem., 1998, vol. 273, no. 8, pp. 24683-24692.
    • (1998) J. Biol. Chem. , vol.273 , Issue.8 , pp. 24683-24692
    • Sark, M.W.1    Fischer, D.F.2    de Meijer, E.3
  • 38
    • 0036792154 scopus 로고    scopus 로고
    • A Human Endogenous Retroviral Sequence Encoding an Antigen Recognized on Melanoma by Cytolytic T Lymphocytes
    • Schiavetti, F., Thonnard, J., Cotau, D., et al., A Human Endogenous Retroviral Sequence Encoding an Antigen Recognized on Melanoma by Cytolytic T Lymphocytes, Cancer Res., 2002, vol. 62, no. 19, pp. 5510-5516.
    • (2002) Cancer Res. , vol.62 , Issue.19 , pp. 5510-5516
    • Schiavetti, F.1    Thonnard, J.2    Cotau, D.3
  • 39
    • 0037267806 scopus 로고    scopus 로고
    • Human-Mouse Alignments with BLASTZ
    • Schwartz, S., Kent, W. J., Smit, A., et al., Human-Mouse Alignments with BLASTZ, Genome Res., 2003, vol. 13, no. l, pp. 103-107.
    • (2003) Genome Res. , vol.13 , Issue.l , pp. 103-107
    • Schwartz, S.1    Kent, W.J.2    Smit, A.3
  • 40
    • 0029655710 scopus 로고    scopus 로고
    • The Promoter Activity of Long Terminal Repeats of the HERV-H Family of Human Retrovirus-Like Elements Is Critically Dependent on Spl Family Proteins Interacting with a GC/GT Box Located Immediately 3′ to the TATA Box
    • Sjottem, E., Anderssen, S., and Johansen, T., The Promoter Activity of Long Terminal Repeats of the HERV-H Family of Human Retrovirus-Like Elements Is Critically Dependent on Spl Family Proteins Interacting with a GC/GT Box Located Immediately 3′ to the TATA Box, J. Virol., 1996, vol. 70, no. 1, pp. 188-198.
    • (1996) J. Virol. , vol.70 , Issue.1 , pp. 188-198
    • Sjottem, E.1    Anderssen, S.2    Johansen, T.3
  • 41
    • 2942642114 scopus 로고    scopus 로고
    • Digital Expression Profiles of Human Endogenous Retroviral Families in Normal and Cancerous Tissues
    • Stauffer, Y., Theiler, G., Sperisen, P., et al., Digital Expression Profiles of Human Endogenous Retroviral Families in Normal and Cancerous Tissues, Cancer Immun., 2004, vol. 4, p. 2.
    • (2004) Cancer Immun. , vol.4 , pp. 2
    • Stauffer, Y.1    Theiler, G.2    Sperisen, P.3
  • 42
    • 34547941988 scopus 로고    scopus 로고
    • Pituitary Tumor-Transforming Gene Interacts with Sp1 to Modulate G1/S Cell Phase Transition
    • Tong, Y., Tan, Y., Zhou, C., and Melmed, S., Pituitary Tumor-Transforming Gene Interacts with Sp1 to Modulate G1/S Cell Phase Transition, Oncogene, 2007, vol. 26, no. 38, pp. 5596-5605.
    • (2007) Oncogene , vol.26 , Issue.38 , pp. 5596-5605
    • Tong, Y.1    Tan, Y.2    Zhou, C.3    Melmed, S.4
  • 43
    • 0025271055 scopus 로고
    • Autonomous Expression of HERV-H Endogenous Retrovirus-Like Elements in Human Cells
    • Wilkinson, D. A., Freeman, J. D., Goodchild, N. L., et al., Autonomous Expression of HERV-H Endogenous Retrovirus-Like Elements in Human Cells, J. Virol., 1990, vol. 64, pp. 2157-2167.
    • (1990) J. Virol. , vol.64 , pp. 2157-2167
    • Wilkinson, D.A.1    Freeman, J.D.2    Goodchild, N.L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.