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Volumn 4, Issue , 2004, Pages

Digital expression profiles of human endogenous retroviral families in normal and cancerous tissues

Author keywords

ESTs; Gene expression profiling; HERVs; Human; Massively parallel signature sequencing; Neoplasms

Indexed keywords

ARTICLE; BLADDER CANCER; BONE MARROW CANCER; BRAIN; CANCER TISSUE; COLON CANCER; CONTROLLED STUDY; EXPRESSED SEQUENCE TAG; GENE MAPPING; GENE SEQUENCE; GENETIC CODE; GERM CELL TUMOR; HUMAN; HUMAN CELL; HUMAN TISSUE; INTESTINE CANCER; MUSCLE; NONHUMAN; PLACENTA; PROSTATE CANCER; PROVIRUS; RETROVIRUS; SEQUENCE ANALYSIS; SKIN; STOMACH CANCER; TISSUE DISTRIBUTION; UTERINE CERVIX CANCER; VIRUS EXPRESSION; VIRUS GENE; VIRUS STRAIN;

EID: 2942642114     PISSN: 14249634     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (74)

References (47)
  • 1
    • 0029938821 scopus 로고    scopus 로고
    • The viruses in all of us: Characteristics and biological significance of human endogenous retrovirus sequences
    • PMID: 8643549
    • Lower R, Lower J, Kurth R. The viruses in all of us: characteristics and biological significance of human endogenous retrovirus sequences. Proc Natl Acad Sci USA 1996; 93: 5177-84. (PMID: 8643549)
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 5177-5184
    • Lower, R.1    Lower, J.2    Kurth, R.3
  • 2
    • 0030479536 scopus 로고    scopus 로고
    • The origin of interspersed repeats in the human genome
    • PMID: 8994846
    • Smit AF. The origin of interspersed repeats in the human genome. Curr Opin Genet Dev 1996; 6: 743-8. (PMID: 8994846)
    • (1996) Curr Opin Genet Dev , vol.6 , pp. 743-748
    • Smit, A.F.1
  • 3
    • 0034108733 scopus 로고    scopus 로고
    • Identification and characterization of novel human endogenous retrovirus families by phylogenetic screening of the human genome mapping project database
    • PMID: 10729147
    • Tristem M. Identification and characterization of novel human endogenous retrovirus families by phylogenetic screening of the human genome mapping project database. J Virol 2000; 74: 3715-30. (PMID: 10729147)
    • (2000) J Virol , vol.74 , pp. 3715-3730
    • Tristem, M.1
  • 4
    • 0034917315 scopus 로고    scopus 로고
    • Endogenous retroviruses in the human genome sequence
    • REVIEWS1017. (PMID: 11423012)
    • Griffiths DJ. Endogenous retroviruses in the human genome sequence. Genome Biol 2001; 2: REVIEWS1017. (PMID: 11423012)
    • (2001) Genome Biol , vol.2
    • Griffiths, D.J.1
  • 5
    • 0003358914 scopus 로고    scopus 로고
    • Retroviridae: The viruses and their replication
    • Howley PM, editor. Philadelphia (PA): Lippincott-Raven
    • Coffin JM. Retroviridae: the viruses and their replication. In: Howley PM, editor. Fundamental Virology. 3rd ed. Philadelphia (PA): Lippincott-Raven; 1996. p. 798-806.
    • (1996) Fundamental Virology. 3rd Ed. , pp. 798-806
    • Coffin, J.M.1
  • 6
    • 0022495561 scopus 로고
    • Molecular cloning and long terminal repeat sequences of human endogenous retrovirus genes related to types A and B retrovirus genes
    • PMID: 3009897
    • Ono M. Molecular cloning and long terminal repeat sequences of human endogenous retrovirus genes related to types A and B retrovirus genes. J Virol 1986; 58: 937-44. (PMID: 3009897)
    • (1986) J Virol , vol.58 , pp. 937-944
    • Ono, M.1
  • 8
    • 0344450781 scopus 로고    scopus 로고
    • Molecular characterization and placental expression of HERV-W, a new human endogenous retrovirus family
    • PMID: 9882319
    • Blond JL, Beseme F, Duret L, Bouton O, Bedin F, Perron H, Mandrand B, Mallet F. Molecular characterization and placental expression of HERV-W, a new human endogenous retrovirus family. J Virol 1999; 73: 1175-85. (PMID: 9882319)
    • (1999) J Virol , vol.73 , pp. 1175-1185
    • Blond, J.L.1    Beseme, F.2    Duret, L.3    Bouton, O.4    Bedin, F.5    Perron, H.6    Mandrand, B.7    Mallet, F.8
  • 9
    • 0033526516 scopus 로고    scopus 로고
    • Isolation of a human endogenous retroviral HERV-H element with an open env reading frame
    • PMID: 10366582
    • Lindeskog M, Mager DL, Blomberg J. Isolation of a human endogenous retroviral HERV-H element with an open env reading frame. Virology 1999; 258: 441-50. (PMID: 10366582)
    • (1999) Virology , vol.258 , pp. 441-450
    • Lindeskog, M.1    Mager, D.L.2    Blomberg, J.3
  • 10
    • 0032987773 scopus 로고    scopus 로고
    • DNA methylation and expression of LINE-1 and HERV-K provirus sequences in urothelial and renal cell carcinomas
    • PMID: 10424731
    • Florl AR, Lower R, Schmitz-Drager BJ, Schulz WA. DNA methylation and expression of LINE-1 and HERV-K provirus sequences in urothelial and renal cell carcinomas. Br J Cancer 1999; 80: 1312-21. (PMID: 10424731)
    • (1999) Br J Cancer , vol.80 , pp. 1312-1321
    • Florl, A.R.1    Lower, R.2    Schmitz-Drager, B.J.3    Schulz, W.A.4
  • 12
    • 0034790862 scopus 로고    scopus 로고
    • Monocyte activation and differentiation augment human endogenous retrovirus expression: Implications for inflammatory brain diseases
    • PMID: 11601494
    • Johnston JB, Silva C, Holden J, Warren KG, Clark AW, Power C. Monocyte activation and differentiation augment human endogenous retrovirus expression: implications for inflammatory brain diseases. Ann Neurol 2001; 50: 434-42. (PMID: 11601494)
    • (2001) Ann Neurol , vol.50 , pp. 434-442
    • Johnston, J.B.1    Silva, C.2    Holden, J.3    Warren, K.G.4    Clark, A.W.5    Power, C.6
  • 13
    • 0027244861 scopus 로고
    • Evidence that HERV-K is the endogenous retrovirus sequence that codes for the human teratocarcinoma-derived retrovirus HTDV
    • PMID: 8356806
    • Boller K, Konig H, Sauter M, Mueller-Lantzsch N, Lower R, Lower J, Kurth R. Evidence that HERV-K is the endogenous retrovirus sequence that codes for the human teratocarcinoma-derived retrovirus HTDV. Virology 1993; 196: 349-53. (PMID: 8356806)
    • (1993) Virology , vol.196 , pp. 349-353
    • Boller, K.1    Konig, H.2    Sauter, M.3    Mueller-Lantzsch, N.4    Lower, R.5    Lower, J.6    Kurth, R.7
  • 15
    • 0037663943 scopus 로고    scopus 로고
    • Detecting the expression of human endogenous retrovirus E envelope transcripts in human prostate adenocarcinoma
    • PMID: 12833471
    • Wang-Johanning F, Frost AR, Jian B, Azerou R, Lu DW, Chen DT, Johanning GL. Detecting the expression of human endogenous retrovirus E envelope transcripts in human prostate adenocarcinoma. Cancer 2003; 98: 187-97. (PMID: 12833471)
    • (2003) Cancer , vol.98 , pp. 187-197
    • Wang-Johanning, F.1    Frost, A.R.2    Jian, B.3    Azerou, R.4    Lu, D.W.5    Chen, D.T.6    Johanning, G.L.7
  • 16
    • 0030782151 scopus 로고    scopus 로고
    • Spliced human endogenous retroviral HERV-H env transcripts in T-cell leukaemia cell lines and normal leukocytes: Alternative splicing pattern of HERV-H transcripts
    • PMID: 9349478
    • Lindeskog M, Blomberg J. Spliced human endogenous retroviral HERV-H env transcripts in T-cell leukaemia cell lines and normal leukocytes: alternative splicing pattern of HERV-H transcripts. J Gen Virol 1997; 78 (Pt 10): 2575-85. (PMID: 9349478)
    • (1997) J Gen Virol , vol.78 , Issue.PART 10 , pp. 2575-2585
    • Lindeskog, M.1    Blomberg, J.2
  • 17
    • 0035836737 scopus 로고    scopus 로고
    • Retroviral RNA identified in the cerebrospinal fluids and brains of individuals with schizophrenia
    • PMID: 11296294
    • Karlsson H, Bachmann S, Schroder J, McArthur J, Torrey EF, Yolken RH. Retroviral RNA identified in the cerebrospinal fluids and brains of individuals with schizophrenia. Proc Natl Acad Sci USA 2001; 98: 4634-9. (PMID: 11296294)
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 4634-4629
    • Karlsson, H.1    Bachmann, S.2    Schroder, J.3    McArthur, J.4    Torrey, E.F.5    Yolken, R.H.6
  • 20
    • 0036792154 scopus 로고    scopus 로고
    • A human endogenous retroviral sequence encoding an antigen recognized on melanoma by cytolytic T lymphocytes
    • PMID: 12359761
    • Schiavetti F, Thonnard J, Colau D, Boon T, Coulie PG. A human endogenous retroviral sequence encoding an antigen recognized on melanoma by cytolytic T lymphocytes. Cancer Res 2002; 62: 5510-6. (PMID: 12359761)
    • (2002) Cancer Res , vol.62 , pp. 5510-5516
    • Schiavetti, F.1    Thonnard, J.2    Colau, D.3    Boon, T.4    Coulie, P.G.5
  • 23
    • 33645522272 scopus 로고    scopus 로고
    • Many human endogenous retrovirus K (HERV-K) proviruses are unique to humans
    • PMID: 10469592
    • Barbulescu M, Turner G, Seaman MI, Deinard AS, Kidd KK, Lenz J. Many human endogenous retrovirus K (HERV-K) proviruses are unique to humans. Curr Biol 1999; 9: 861-8. (PMID: 10469592)
    • (1999) Curr Biol , vol.9 , pp. 861-868
    • Barbulescu, M.1    Turner, G.2    Seaman, M.I.3    Deinard, A.S.4    Kidd, K.K.5    Lenz, J.6
  • 24
    • 0035734951 scopus 로고    scopus 로고
    • Evidence for genomic rearrangements mediated by human endogenous retroviruses during primate evolution
    • PMID: 11704760
    • Hughes JF, Coffin JM. Evidence for genomic rearrangements mediated by human endogenous retroviruses during primate evolution. Nat Genet 2001; 29: 487-9. (PMID: 11704760)
    • (2001) Nat Genet , vol.29 , pp. 487-489
    • Hughes, J.F.1    Coffin, J.M.2
  • 25
    • 0034858074 scopus 로고    scopus 로고
    • HERV-K(OLD): Ancestor sequences of the human endogenous retrovirus family HERV-K(HML-2)
    • PMID: 11533155
    • Reus K, Mayer J, Sauter M, Zischler H, Muller-Lantzsch N, Meese E. HERV-K(OLD): ancestor sequences of the human endogenous retrovirus family HERV-K(HML-2). J Virol 2001; 75: 8917-26. (PMID: 11533155)
    • (2001) J Virol , vol.75 , pp. 8917-8926
    • Reus, K.1    Mayer, J.2    Sauter, M.3    Zischler, H.4    Muller-Lantzsch, N.5    Meese, E.6
  • 26
    • 0035864284 scopus 로고    scopus 로고
    • Characterization of the three HERV-H proviruses with an open envelope reading frame encompassing the immunosuppressive domain and evolutionary history in primates
    • PMID: 11162811
    • de Parseval N, Casella J, Gressin L, Heidmann T. Characterization of the three HERV-H proviruses with an open envelope reading frame encompassing the immunosuppressive domain and evolutionary history in primates. Virology 2001; 279: 558-69. (PMID: 11162811)
    • (2001) Virology , vol.279 , pp. 558-569
    • De Parseval, N.1    Casella, J.2    Gressin, L.3    Heidmann, T.4
  • 27
    • 44949272730 scopus 로고
    • A time-efficient, linear-space local similarity algorithm
    • Huang X, Miller W. A time-efficient, linear-space local similarity algorithm. Adv Appl Math 1991; 12: 373-81.
    • (1991) Adv Appl Math , vol.12 , pp. 373-381
    • Huang, X.1    Miller, W.2
  • 28
    • 0032964297 scopus 로고    scopus 로고
    • BLAST 2 sequences, a new tool for comparing protein and nucleotide sequences
    • PMID: 10339815
    • Tatusova TA, Madden TL. BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences. FEMS Microbiol Lett 1999; 174: 247-50. (PMID: 10339815)
    • (1999) FEMS Microbiol Lett , vol.174 , pp. 247-250
    • Tatusova, T.A.1    Madden, T.L.2
  • 29
    • 0034053725 scopus 로고    scopus 로고
    • A greedy algorithm for aligning DNA sequences
    • PMID: 10890397
    • Zhang Z, Schwartz S, Wagner L, Miller W. A greedy algorithm for aligning DNA sequences. J Comput Biol 2000; 7: 203-14. (PMID: 10890397)
    • (2000) J Comput Biol , vol.7 , pp. 203-214
    • Zhang, Z.1    Schwartz, S.2    Wagner, L.3    Miller, W.4
  • 30
    • 0035280901 scopus 로고    scopus 로고
    • Transcriptionally active HERV-K genes: Identification, isolation, and chromosomal mapping
    • PMID: 11401426
    • Sugimoto J, Matsuura N, Kinjo Y, Takasu N, Oda T, Jinno Y. Transcriptionally active HERV-K genes: identification, isolation, and chromosomal mapping. Genomics 2001; 72: 137-44. (PMID: 11401426)
    • (2001) Genomics , vol.72 , pp. 137-144
    • Sugimoto, J.1    Matsuura, N.2    Kinjo, Y.3    Takasu, N.4    Oda, T.5    Jinno, Y.6
  • 32
    • 0034053834 scopus 로고    scopus 로고
    • An envelope glycoprotein of the human endogenous retrovirus HERV-W is expressed in the human placenta and fuses cells expressing the type D mammalian retrovirus receptor
    • PMID: 10708449
    • Blond JL, Lavillette D, Cheynet V, Bouton O, Oriol G, Chapel-Fernandes S, Mandrand B, Mallet F, Cosset FL. An envelope glycoprotein of the human endogenous retrovirus HERV-W is expressed in the human placenta and fuses cells expressing the type D mammalian retrovirus receptor. J Virol 2000; 74: 3321-9. (PMID: 10708449)
    • (2000) J Virol , vol.74 , pp. 3321-3329
    • Blond, J.L.1    Lavillette, D.2    Cheynet, V.3    Bouton, O.4    Oriol, G.5    Chapel-Fernandes, S.6    Mandrand, B.7    Mallet, F.8    Cosset, F.L.9
  • 34
    • 0030482404 scopus 로고    scopus 로고
    • Regulation of human endogenous retrovirus-K Gag expression in teratocarcinoma cell lines and human tumours
    • PMID: 9000088
    • Gotzinger N, Sauter M, Roemer K, Mueller-Lantzsch N. Regulation of human endogenous retrovirus-K Gag expression in teratocarcinoma cell lines and human tumours. J Gen Virol 1996; 77 (Pt 12): 2983-90. (PMID: 9000088)
    • (1996) J Gen Virol , vol.77 , Issue.PART 12 , pp. 2983-2990
    • Gotzinger, N.1    Sauter, M.2    Roemer, K.3    Mueller-Lantzsch, N.4
  • 35
    • 0031000326 scopus 로고    scopus 로고
    • Characterization of the antibody response specific for the human endogenous retrovirus HTDV/HERV-K
    • PMID: 9151852
    • Boller K, Janssen O, Schuldes H, Tonjes RR, Kurth R. Characterization of the antibody response specific for the human endogenous retrovirus HTDV/HERV-K. J Virol 1997; 71: 4581-8. (PMID: 9151852)
    • (1997) J Virol , vol.71 , pp. 4581-4588
    • Boller, K.1    Janssen, O.2    Schuldes, H.3    Tonjes, R.R.4    Kurth, R.5
  • 36
    • 2942691132 scopus 로고    scopus 로고
    • Personal communication
    • Obata Y. Personal communication.
    • Obata, Y.1
  • 37
    • 0035797901 scopus 로고    scopus 로고
    • Insertional polymorphisms of full-length endogenous retroviruses in humans
    • PMID: 11591322
    • Turner G, Barbulescu M, Su M, Jensen-Seaman MI, Kidd KK, Lenz J. Insertional polymorphisms of full-length endogenous retroviruses in humans. Curr Biol 2001; 11: 1531-5. (PMID: 11591322)
    • (2001) Curr Biol , vol.11 , pp. 1531-1535
    • Turner, G.1    Barbulescu, M.2    Su, M.3    Jensen-Seaman, M.I.4    Kidd, K.K.5    Lenz, J.6
  • 38
    • 0034874891 scopus 로고    scopus 로고
    • Evolutionary dynamics of the human endogenous retrovirus family HERV-K inferred from full-length proviral genomes
    • PMID: 11523010
    • Costas J. Evolutionary dynamics of the human endogenous retrovirus family HERV-K inferred from full-length proviral genomes. J Mol Evol 2001; 53: 237-43. (PMID: 11523010)
    • (2001) J Mol Evol , vol.53 , pp. 237-243
    • Costas, J.1
  • 39
    • 0242374713 scopus 로고    scopus 로고
    • Genome-wide screening, cloning, chromosomal assignment, and expression of full-length human endogenous retrovirus type K
    • PMID: 10516026
    • Tonjes RR, Czauderna F, Kurth R. Genome-wide screening, cloning, chromosomal assignment, and expression of full-length human endogenous retrovirus type K. J Virol 1999; 73: 9187-95. (PMID: 10516026)
    • (1999) J Virol , vol.73 , pp. 9187-9195
    • Tonjes, R.R.1    Czauderna, F.2    Kurth, R.3
  • 40
    • 0021827212 scopus 로고
    • Nucleotide sequence of a full-length human endogenous retroviral segment
    • PMID: 3999194
    • Repaske R, Steele PE, O'Neill RR, Rabson AB, Martin MA. Nucleotide sequence of a full-length human endogenous retroviral segment. J Virol 1985; 54: 764-72. (PMID: 3999194)
    • (1985) J Virol , vol.54 , pp. 764-772
    • Repaske, R.1    Steele, P.E.2    O'Neill, R.R.3    Rabson, A.B.4    Martin, M.A.5
  • 41
    • 0023010394 scopus 로고
    • Nucleotide sequence of human endogenous retrovirus genome related to the mouse mammary tumor virus genome
    • PMID: 3021993
    • Ono M, Yasunaga T, Miyata T, Ushikubo H. Nucleotide sequence of human endogenous retrovirus genome related to the mouse mammary tumor virus genome. J Virol 1986; 60: 589-98. (PMID: 3021993)
    • (1986) J Virol , vol.60 , pp. 589-598
    • Ono, M.1    Yasunaga, T.2    Miyata, T.3    Ushikubo, H.4
  • 42
    • 0034748390 scopus 로고    scopus 로고
    • Interferon-alpha-induced endogenous superantigen. A model linking environment and autoimmunity
    • PMID: 11672541
    • Stauffer Y, Marguerat S, Meylan F, Ucla C, Sutkowski N, Huber B, Pelet T, Conrad B. Interferon-alpha-induced endogenous superantigen. a model linking environment and autoimmunity. Immunity 2001; 15: 591-601. (PMID: 11672541)
    • (2001) Immunity , vol.15 , pp. 591-601
    • Stauffer, Y.1    Marguerat, S.2    Meylan, F.3    Ucla, C.4    Sutkowski, N.5    Huber, B.6    Pelet, T.7    Conrad, B.8
  • 43
    • 2942632470 scopus 로고    scopus 로고
    • Human BLAT Search. URL: http://zeon.well.ox.ac.uk/cgi-bin/hgBlat?command=start&org=human
    • Human BLAT Search
  • 44
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • PMID: 7265238
    • Smith TF, Waterman MS. Identification of common molecular subsequences. J Mol Biol 1981; 147: 195-7. (PMID: 7265238)
    • (1981) J Mol Biol , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 46
    • 0025259313 scopus 로고
    • Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
    • PMID: 2315319
    • Karlin S, Altschul SF. Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc Natl Acad Sci USA 1990; 87: 2264-8. (PMID: 2315319)
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 2264-2268
    • Karlin, S.1    Altschul, S.F.2
  • 47
    • 84872620318 scopus 로고    scopus 로고
    • NCBI ORF Finder. URL: http://www.ncbi.nih.gov/gorf/gorf.html
    • NCBI ORF Finder


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.