메뉴 건너뛰기




Volumn 7, Issue 8, 2012, Pages 800-805

Trans-chromosomal methylation

Author keywords

24 nt siRNA; Arabidopsis thaliana; DNA methylation; Epialleles; EpiRILs; Heterosis; Hybrids; Paramutation; RdDM

Indexed keywords

DNA (CYTOSINE 5) METHYLTRANSFERASE; RAS PROTEIN; SMALL INTERFERING RNA;

EID: 84864668260     PISSN: 15592294     EISSN: 15592308     Source Type: Journal    
DOI: 10.4161/epi.20820     Document Type: Article
Times cited : (22)

References (37)
  • 1
    • 33846543858 scopus 로고    scopus 로고
    • Heterosis: Revisiting the magic
    • PMID:17188398
    • Lippman ZB, Zamir D. Heterosis: revisiting the magic. Trends Genet 2007; 23:60-66; PMID:17188398; http://dx.doi.org/10.1016/j.tig.2006.12.006.
    • (2007) Trends Genet , vol.23 , pp. 60-66
    • Lippman, Z.B.1    Zamir, D.2
  • 2
    • 34548395815 scopus 로고    scopus 로고
    • Towards the molecular basis of heterosis
    • PMID:17720610
    • Hochholdinger F, Hoecker N. Towards the molecular basis of heterosis. Trends Plant Sci 2007; 12:427-432; PMID:17720610; http://dx.doi.org/10.1016/j.tplants.2007.08.005.
    • (2007) Trends Plant Sci , vol.12 , pp. 427-432
    • Hochholdinger, F.1    Hoecker, N.2
  • 4
    • 77950346035 scopus 로고    scopus 로고
    • Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids
    • PMID:20086188
    • He GM, Zhu XP, Elling AA, Chen LB, Wang XF, Guo L, et al. Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids. Plant Cell 2010; 22:17-33; PMID:20086188; http://dx.doi.org/10.1105/tpc.109.072041.
    • (2010) Plant Cell , vol.22 , pp. 17-33
    • He, G.M.1    Zhu, X.P.2    Elling, A.A.3    Chen, L.B.4    Wang, X.F.5    Guo, L.6
  • 5
    • 70449588694 scopus 로고    scopus 로고
    • Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids
    • PMID:19805056
    • Ha M, Lu J, Tian L, Ramachandran V, Kasschau KD, Chapman EJ, et al. Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids. Proc Natl Acad Sci USA 2009; 106:17835-17840; PMID:19805056; http://dx.doi.org/10.1073/pnas.0907003106.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 17835-17840
    • Ha, M.1    Lu, J.2    Tian, L.3    Ramachandran, V.4    Kasschau, K.D.5    Chapman, E.J.6
  • 6
    • 79952301195 scopus 로고    scopus 로고
    • Changes in 24-nt siRNA levels in Arabidopsis hybrids suggest an epigenetic contribution to hybrid vigor
    • PMID:21266545
    • Groszmann M, Greaves IK, Albertyn ZI, Scofield GN, Peacock WJ, Dennis ES. Changes in 24-nt siRNA levels in Arabidopsis hybrids suggest an epigenetic contribution to hybrid vigor. Proc Natl Acad Sci USA 2011; 108:2617-2622; PMID:21266545; http://dx.doi.org/10.1073/pnas.1019217108.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 2617-2622
    • Groszmann, M.1    Greaves, I.K.2    Albertyn, Z.I.3    Scofield, G.N.4    Peacock, W.J.5    Dennis, E.S.6
  • 8
    • 84860109530 scopus 로고    scopus 로고
    • Genome-wide analysis of DNA methylation and gene expression changes in two Arabidopsis ecotypes and their reciprocal hybrids
    • PMID:22438023
    • Shen H, He H, Li J, Chen W, Wang X, Guo L, et al. Genome-wide analysis of DNA methylation and gene expression changes in two Arabidopsis ecotypes and their reciprocal hybrids. Plant Cell 2012; 24:875-892; PMID:22438023; http://dx.doi.org/10.1105/tpc.111.094870.
    • (2012) Plant Cell , vol.24 , pp. 875-892
    • Shen, H.1    He, H.2    Li, J.3    Chen, W.4    Wang, X.5    Guo, L.6
  • 9
    • 79952535972 scopus 로고    scopus 로고
    • Regulation and function of DNA methylation in plants and animals
    • PMID:21321601
    • He XJ, Chen T, Zhu JK. Regulation and function of DNA methylation in plants and animals. Cell Res 2011; 21:442-465; PMID:21321601; http://dx.doi.org/10.1038/cr.2011.23.
    • (2011) Cell Res , vol.21 , pp. 442-465
    • He, X.J.1    Chen, T.2    Zhu, J.K.3
  • 11
    • 77249170184 scopus 로고    scopus 로고
    • Establishing, maintaining and modifying DNA methylation patterns in plants and animals
    • PMID:20142834
    • Law JA, Jacobsen SE. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet 2010; 11:204-220; PMID:20142834; http://dx.doi.org/10.1038/nrg2719.
    • (2010) Nat Rev Genet , vol.11 , pp. 204-220
    • Law, J.A.1    Jacobsen, S.E.2
  • 12
    • 42749087226 scopus 로고    scopus 로고
    • Highly integrated single-base resolution maps of the epigenome in Arabidopsis
    • PMID:18423832
    • Lister R, O'Malley RC, Tonti-Filippini J, Gregory BD, Berry CC, Millar AH, et al. Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell 2008; 133:523-536; PMID:18423832; http://dx.doi.org/10.1016/j.cell.2008.03.029.
    • (2008) Cell , vol.133 , pp. 523-536
    • Lister, R.1    O'Malley, R.C.2    Tonti-Filippini, J.3    Gregory, B.D.4    Berry, C.C.5    Millar, A.H.6
  • 13
    • 40749109894 scopus 로고    scopus 로고
    • Shotgun bisulphate sequencing of the Arabidopsis genome reveals DNA methylation patterning
    • PMID:18278030
    • Cokus SJ, Feng SH, Zhang XY, Chen ZG, Merriman B, Haudenschild CD, et al. Shotgun bisulphate sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature 2008; 452:215-219; PMID:18278030; http://dx.doi.org/10.1038/nature06745.
    • (2008) Nature , vol.452 , pp. 215-219
    • Cokus, S.J.1    Feng, S.H.2    Zhang, X.Y.3    Chen, Z.G.4    Merriman, B.5    Haudenschild, C.D.6
  • 14
    • 0033637356 scopus 로고    scopus 로고
    • The late flowering phenotype of fwa mutants is caused by gain-offunction epigenetic alleles of a homeodomain gene
    • PMID:11090618
    • Soppe WJJ, Jacobsen SE, Alonso-Blanco C, Jackson JP, Kakutani T, Koornneef M, et al. The late flowering phenotype of fwa mutants is caused by gain-offunction epigenetic alleles of a homeodomain gene. Mol Cell 2000; 6:791-802; PMID:11090618; http://dx.doi.org/10.1016/S1097-2765(05)00090-0.
    • (2000) Mol Cell , vol.6 , pp. 791-802
    • Soppe, W.J.J.1    Jacobsen, S.E.2    Alonso-Blanco, C.3    Jackson, J.P.4    Kakutani, T.5    Koornneef, M.6
  • 15
    • 33845621109 scopus 로고    scopus 로고
    • Control of FWA gene silencing in Arabidopsis thaliana by SINErelated direct repeats
    • PMID:17144899
    • Kinoshita Y, Saze H, Kinoshita T, Miura A, Soppe WJJ, Koornneef M, et al. Control of FWA gene silencing in Arabidopsis thaliana by SINErelated direct repeats. Plant J 2007; 49:38-45; PMID:17144899; http://dx.doi.org/10.1111/j.1365-313X.2006.02936.x.
    • (2007) Plant J , vol.49 , pp. 38-45
    • Kinoshita, Y.1    Saze, H.2    Kinoshita, T.3    Miura, A.4    Soppe, W.J.J.5    Koornneef, M.6
  • 16
    • 0037046810 scopus 로고    scopus 로고
    • Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing
    • PMID:12121623
    • Cao XF, Jacobsen SE. Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing. Curr Biol 2002; 12:1138-1144; PMID:12121623; http://dx.doi.org/10.1016/S0960-9822(02)00925-9.
    • (2002) Curr Biol , vol.12 , pp. 1138-1144
    • Cao, X.F.1    Jacobsen, S.E.2
  • 17
    • 33751045998 scopus 로고    scopus 로고
    • Two-step recruitment of RNA-directed DNA methylation to tandem repeats
    • PMID:17105345
    • Chan SWL, Zhang X, Bernatavichute YV, Jacobsen SE. Two-step recruitment of RNA-directed DNA methylation to tandem repeats. PLoS Biol 2006; 4:363; PMID:17105345; http://dx.doi.org/10.1371/journal.pbio.0040363.
    • (2006) PLoS Biol , vol.4 , pp. 363
    • Chan, S.W.L.1    Zhang, X.2    Bernatavichute, Y.V.3    Jacobsen, S.E.4
  • 19
    • 78049354473 scopus 로고    scopus 로고
    • Paramutation's properties and puzzles
    • PMID:21030647
    • Chandler VL. Paramutation's properties and puzzles. Science 2010; 330:628-629; PMID:21030647; http://dx.doi.org/10.1126/science.1191044.
    • (2010) Science , vol.330 , pp. 628-629
    • Chandler, V.L.1
  • 20
    • 0036682518 scopus 로고    scopus 로고
    • Differential chromatin structure within a tandem array 100 kb upstream of the maize b1 locus is associated with paramutation
    • PMID:12154122
    • Stam M, Belele C, Dorweiler JE, Chandler VL. Differential chromatin structure within a tandem array 100 kb upstream of the maize b1 locus is associated with paramutation. Genes Dev 2002; 16:1906-1918; PMID:12154122; http://dx.doi.org/10.1101/gad.1006702.
    • (2002) Genes Dev , vol.16 , pp. 1906-1918
    • Stam, M.1    Belele, C.2    Dorweiler, J.E.3    Chandler, V.L.4
  • 21
    • 77954891466 scopus 로고    scopus 로고
    • The role of DNA methylation, nucleosome occupancy and histone modifications in paramutation
    • PMID:20444233
    • Haring M, Bader R, Louwers M, Schwabe A, van Driel R, Stam M. The role of DNA methylation, nucleosome occupancy and histone modifications in paramutation. Plant J 2010; 63:366-378; PMID:20444233; http://dx.doi.org/10.1111/j.1365-313X.2010.04245.x.
    • (2010) Plant J , vol.63 , pp. 366-378
    • Haring, M.1    Bader, R.2    Louwers, M.3    Schwabe, A.4    van Driel, R.5    Stam, M.6
  • 22
    • 33746363573 scopus 로고    scopus 로고
    • An RNA-dependent RNA polymerase is required for paramutation in maize
    • PMID:16855589
    • Alleman M, Sidorenko L, McGinnis K, Seshadri V, Dorweiler JE, White J, et al. An RNA-dependent RNA polymerase is required for paramutation in maize. Nature 2006; 442:295-298; PMID:16855589; http://dx.doi.org/10.1038/nature04884.
    • (2006) Nature , vol.442 , pp. 295-298
    • Alleman, M.1    Sidorenko, L.2    McGinnis, K.3    Seshadri, V.4    Dorweiler, J.E.5    White, J.6
  • 23
    • 77955601269 scopus 로고    scopus 로고
    • RNAmediated trans-communication can establish paramutation at the b1 locus in maize
    • PMID:20616013
    • Arteaga-Vazquez M, Sidorenko L, Rabanal FA, Shrivistava R, Nobuta K, Green PJ, et al. RNAmediated trans-communication can establish paramutation at the b1 locus in maize. Proc Natl Acad Sci USA 2010; 107:12986-12991; PMID:20616013; http://dx.doi.org/10.1073/pnas.1007972107.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 12986-12991
    • Arteaga-Vazquez, M.1    Sidorenko, L.2    Rabanal, F.A.3    Shrivistava, R.4    Nobuta, K.5    Green, P.J.6
  • 24
    • 65249186659 scopus 로고    scopus 로고
    • Compromised stability of DNA methylation and transposon immobilization in mosaic Arabidopsis epigenomes
    • PMID:19390088
    • Reinders J, Wulff BBH, Mirouze M, Marí-Ordóñez A, Dapp M, Rozhon W, et al. Compromised stability of DNA methylation and transposon immobilization in mosaic Arabidopsis epigenomes. Genes Dev 2009; 23:939-950; PMID:19390088; http://dx.doi.org/10.1101/gad.524609.
    • (2009) Genes Dev , vol.23 , pp. 939-950
    • Reinders, J.1    Wulff, B.B.H.2    Mirouze, M.3    Marí-Ordóñez, A.4    Dapp, M.5    Rozhon, W.6
  • 25
    • 67651227407 scopus 로고    scopus 로고
    • Assessing the impact of transgenerational epigenetic variation on complex traits
    • PMID:19557164
    • Johannes F, Porcher E, Teixeira FK, Saliba-Colombani V, Simon M, Agier N, et al. Assessing the impact of transgenerational epigenetic variation on complex traits. PLoS Genet 2009; 5:1000530; PMID:19557164; http://dx.doi.org/10.1371/journal.pgen.1000530.
    • (2009) PLoS Genet , vol.5 , pp. 1000530
    • Johannes, F.1    Porcher, E.2    Teixeira, F.K.3    Saliba-Colombani, V.4    Simon, M.5    Agier, N.6
  • 26
    • 62549160981 scopus 로고    scopus 로고
    • A role for RNAi in the selective correction of DNA methylation defects
    • PMID:19179494
    • Teixeira FK, Heredia F, Sarazin A, Roudier F, Boccara M, Ciaudo C, et al. A role for RNAi in the selective correction of DNA methylation defects. Science 2009; 323:1600-1604; PMID:19179494; http://dx.doi.org/10.1126/science.1165313.
    • (2009) Science , vol.323 , pp. 1600-1604
    • Teixeira, F.K.1    Heredia, F.2    Sarazin, A.3    Roudier, F.4    Boccara, M.5    Ciaudo, C.6
  • 27
    • 77955867562 scopus 로고    scopus 로고
    • Trans-acting small RNA determines dominance relationships in Brassica self-incompatibility
    • PMID:20725042
    • Tarutani Y, Shiba H, Iwano M, Kakizaki T, Suzuki G, Watanabe M, et al. Trans-acting small RNA determines dominance relationships in Brassica self-incompatibility. Nature 2010; 466:983-986; PMID:20725042; http://dx.doi.org/10.1038/nature09308.
    • (2010) Nature , vol.466 , pp. 983-986
    • Tarutani, Y.1    Shiba, H.2    Iwano, M.3    Kakizaki, T.4    Suzuki, G.5    Watanabe, M.6
  • 28
    • 0033120047 scopus 로고    scopus 로고
    • An inverted repeat triggers cytosine methylation of identical sequences in Arabidopsis
    • PMID:10230403
    • Luff B, Pawlowski L, Bender J. An inverted repeat triggers cytosine methylation of identical sequences in Arabidopsis. Mol Cell 1999; 3:505-511; PMID:10230403; http://dx.doi.org/10.1016/S1097-2765(00)80478-5.
    • (1999) Mol Cell , vol.3 , pp. 505-511
    • Luff, B.1    Pawlowski, L.2    Bender, J.3
  • 29
    • 80055080002 scopus 로고    scopus 로고
    • Small RNAs prevent transcription-coupled loss of histone H3 lysine 9 methylation in Arabidopsis thaliana
    • PMID:22046144
    • Enke RA, Dong Z, Bender J. Small RNAs prevent transcription-coupled loss of histone H3 lysine 9 methylation in Arabidopsis thaliana. PLoS Genet 2011; 7:1002350; PMID:22046144; http://dx.doi.org/10.1371/journal.pgen.1002350.
    • (2011) PLoS Genet , vol.7 , pp. 1002350
    • Enke, R.A.1    Dong, Z.2    Bender, J.3
  • 31
    • 84861527372 scopus 로고    scopus 로고
    • RNAi-independent de novo DNA methylation revealed in Arabidopsis mutants of chromatin remodeling gene DDM1
    • PMID:22269081
    • Sasaki TKA, Kobayashi A, Saze H, Kakutani T. RNAi-independent de novo DNA methylation revealed in Arabidopsis mutants of chromatin remodeling gene DDM1. Plant J 2012; 70:750-758; PMID:22269081; http://dx.doi.org/10.1111/j.1365-313X.2012.04911.x.
    • (2012) Plant J , vol.70 , pp. 750-758
    • Sasaki, T.K.A.1    Kobayashi, A.2    Saze, H.3    Kakutani, T.4
  • 32
    • 33748629119 scopus 로고    scopus 로고
    • Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis
    • PMID:16949657
    • Zhang XY, Yazaki J, Sundaresan A, Cokus S, Chan SWL, Chen HM, et al. Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis. Cell 2006; 126:1189-1201; PMID:16949657; http://dx.doi.org/10.1016/j.cell.2006.08.003.
    • (2006) Cell , vol.126 , pp. 1189-1201
    • Zhang, X.Y.1    Yazaki, J.2    Sundaresan, A.3    Cokus, S.4    Chan, S.W.L.5    Chen, H.M.6
  • 33
    • 33845880624 scopus 로고    scopus 로고
    • Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
    • PMID:17128275
    • Zilberman D, Gehring M, Tran RK, Ballinger T, Henikoff S. Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nat Genet 2007; 39:61-69; PMID:17128275; http://dx.doi.org/10.1038/ng1929.
    • (2007) Nat Genet , vol.39 , pp. 61-69
    • Zilberman, D.1    Gehring, M.2    Tran, R.K.3    Ballinger, T.4    Henikoff, S.5
  • 34
    • 79960007344 scopus 로고    scopus 로고
    • Paramutation: Just a curiosity or fine tuning of gene expression in the next generation?
    • PMID:22131875
    • Pilu R. Paramutation: just a curiosity or fine tuning of gene expression in the next generation? Curr Genomics 2011; 12:298-306; PMID:22131875; http://dx.doi.org/10.2174/138920211795860099.
    • (2011) Curr Genomics , vol.12 , pp. 298-306
    • Pilu, R.1
  • 35
    • 78650061153 scopus 로고    scopus 로고
    • Transgenerational epigenetic inheritance: More questions than answers
    • PMID:21041414
    • Daxinger L, Whitelaw E. Transgenerational epigenetic inheritance: more questions than answers. Genome Res 2010; 20:1623-1628; PMID:21041414; http://dx.doi.org/10.1101/gr.106138.110.
    • (2010) Genome Res , vol.20 , pp. 1623-1628
    • Daxinger, L.1    Whitelaw, E.2
  • 36
    • 79960530899 scopus 로고    scopus 로고
    • Genomic imprinting: The emergence of an epigenetic paradigm
    • PMID:21765458
    • Ferguson-Smith AC. Genomic imprinting: the emergence of an epigenetic paradigm. Nat Rev Genet 2011; 12:565-575; PMID:21765458; http://dx.doi.org/10.1038/nrg3032.
    • (2011) Nat Rev Genet , vol.12 , pp. 565-575
    • Ferguson-Smith, A.C.1
  • 37
    • 79956052873 scopus 로고    scopus 로고
    • Role for piRNAs and noncoding RNA in de novo DNA methylation of the imprinted mouse Rasgrf1 locus
    • PMID:21566194
    • Watanabe T, Tomizawa Si, Mitsuya K, Totoki Y, Yamamoto Y, Kuramochi-Miyagawa S, et al. Role for piRNAs and noncoding RNA in de novo DNA methylation of the imprinted mouse Rasgrf1 locus. Science 2011; 332:848-852; PMID:21566194; http://dx.doi.org/10.1126/science.1203919.
    • (2011) Science , vol.332 , pp. 848-852
    • Watanabe, T.1    Tomizawa, S.2    Mitsuya, K.3    Totoki, Y.4    Yamamoto, Y.5    Kuramochi-Miyagawa, S.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.