Fungal catalases: Function, phylogenetic origin and structure

Archives of Biochemistry and Biophysics

Volumn 525, Issue 2, 2012, Pages 170-180

  Hansberg, Wilhelm ^a   Salas Lizana, Rodolfo ^b   Domínguez, Laura ^c  

^a INSTITUTO DE FISIOLOGÍA CELULAR   (Mexico)

^b INSTITUTO DE ECOLOGÍA   (Mexico)

^c UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO   (Mexico)

Author keywords

Horizontal gene transfer; Molecular dynamics; Peroxisomal signal peptide; Phylogenetic origin; Secretion

Indexed keywords

CATALASE; COORDINATION COMPOUND; CYSTEINE; FUNGAL ENZYME; HEME; HYDROGEN PEROXIDE; PEROXIDASE; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE; SIGNAL PEPTIDE; SINGLET OXYGEN; TYROSINE; WATER;

ACTINOBACTERIA; ACTINOMYCES NAESLUNDII; AMINO ACID SEQUENCE; BASIDIOMYCETES; BATRACHOCHYTRIUM DENDROBATIDIS; BIOTRANSFORMATION; COVALENT BOND; ENZYME ACTIVE SITE; ENZYME LOCALIZATION; ENZYME METABOLISM; ENZYME STRUCTURE; ENZYME SUBUNIT; ESCHERICHIA COLI; HORIZONTAL GENE TRANSFER; IN VIVO STUDY; MALASSEZIA GLOBOSA; METHANOSARCINA BARKERI; MICROBIAL DIVERSITY; MOLECULAR DYNAMICS; MOLECULAR PHYLOGENY; MUCORALES; NEUROSPORA CRASSA; NONHUMAN; OXIDATIVE STRESS; PEROXISOME; PRIORITY JOURNAL; PROTEIN FUNCTION; REVIEW; TURNOVER TIME;

ASCOMYCOTA; CATALASE; CATALYTIC DOMAIN; CELL DIFFERENTIATION; COMPUTER SIMULATION; FUNGI; GENE EXPRESSION REGULATION, ENZYMOLOGIC; HEME; HYDROGEN PEROXIDE; KINETICS; MOLECULAR CONFORMATION; MOLECULAR DYNAMICS SIMULATION; PEROXIDASE; PHYLOGENY; PROTEIN CONFORMATION;

ACTINOBACTERIA; ANIMALIA; ASCOMYCOTA; BASIDIOMYCOTA; ESCHERICHIA COLI; FUNGI; MALASSEZIA GLOBOSA; MUCORALES; NEUROSPORA CRASSA; PEZIZOMYCETES; PEZIZOMYCOTINA; SACCHAROMYCOTINA;

EID: 84864595617     PISSN: 00039861     EISSN: 10960384     Source Type: Journal    
DOI: 10.1016/j.abb.2012.05.014     Document Type: Review

References (88)

1. A.T. Martinez, M. Speranza, F.J. Ruiz-Duenas, P. Ferreira, S. Camarero, F. Guillen, M.J. Martinez, A. Gutierrez, and J.C. del Rio Int. Microbiol. 8 2005 195 204
2. A. Bourdais, F. Bidard, D. Zickler, V. Berteaux-Lecellier, P. Silar, E. Espagne, PLoS ONE in press.
3. G.P. Bienert, A.L. Moller, K.A. Kristiansen, A. Schulz, I.M. Moller, J.K. Schjoerring, and T.P. Jahn J. Biol. Chem. 282 2007 1183 1192
4. R. Sanchez, M. Riddle, J. Woo, and J. Momand Protein Sci. 17 2008 473 481
5. S.G. Rhee, Y.S. Bae, S.R. Lee, J. Kwon, Sci. STKE 2000 (2000) pe1.
6. G. Roos, and J. Messens Free Radic. Biol. Med. 51 2011 314 326
7. B. Biteau, J. Labarre, and M.B. Toledano Nature 425 2003 980 984
8. T.J. Jonsson, M.S. Murray, L.C. Johnson, and W.T. Lowther J. Biol. Chem. 283 2008 23846 23851
9. J.A. Imlay Mol. Microbiol. 59 2006 1073 1082
10. J.R. Kanofsky Arch. Biochem. Biophys. 274 1989 229 234
11. M.J. Steinbeck, A.U. Khan, and M.J. Karnovsky J. Biol. Chem. 268 1993 15649 15654
12. M.E. Daub, and M. Ehrenshaft Annu. Rev. Phytopathol. 38 2000 461 490
13. D. Parsonage, D.S. Youngblood, G.N. Sarma, Z.A. Wood, P.A. Karplus, and L.B. Poole Biochemistry 44 2005 10583 10592
14. P. Jones, and A. Suggett Biochem. J. 110 1968 617 620
15. O.M. Lardinois, M.M. Mestdagh, and P.G. Rouxhet Biochim. Biophys. Acta 1295 1996 222 238
16. J. Switala, and P.C. Loewen Arch. Biochem. Biophys. 401 2002 145 154
17. A. Díaz, R.A. Muñoz-Clares, P. Rangel, V.J. Valdés, and W. Hansberg Biochimie 87 2005 205 214
18. A. Díaz, V.J. Valdés, E. Rudiño-Piñera, E. Horjales, and W. Hansberg J. Mol. Biol. 386 2009 218 232
19. C.H. Johnson, M.G. Klotz, J.L. York, V. Kruft, and J.E. McEwen Microbiology 148 2002 1129 1142
20. M.G. Klotz, and P.C. Loewen Mol. Biol. Evol. 20 2003 1098 1112
21. M. Zamocky, B. Gasselhuber, P.G. Furtmuller, C. Obinger, Arch. Biochem. Biophys. (2012).
22. S. Bandyopadhyay, and M.R. Cookson BMC Evol. Biol. 4 2004 6
23. H. Aebi Methods Enzymol. 105 1984 121 126
24. H.N. Kirkman, S. Galiano, and G.F. Gaetani J. Biol. Chem. 262 1987 660 666
25. G.F. Gaetani, A.M. Ferraris, P. Sanna, and H.N. Kirkman Biochem. J. 385 2005 763 768
26. Y.S. Ho, Y. Xiong, W. Ma, A. Spector, and D.S. Ho J. Biol. Chem. 279 2004 32804 32812
27. S. Muller Mol. Microbiol. 53 2004 1291 1305
28. A. Mhamdi, G. Queval, S. Chaouch, S. Vanderauwera, F. Van Breusegem, and G. Noctor J. Exp. Bot. 61 2010 4197 4220
29. P.C. Loewen J. Bacteriol. 157 1984 622 626
30. H. Ruis, and F. Koller J.G. Scandalios, Oxidative Stress and the Molecular Biology of Antioxidant Defenses 1997 Cold Spring Harbour Laboratory Press New York 309 342
31. R.E. Navarro, M.A. Stringer, W. Hansberg, W.E. Timberlake, and J. Aguirre Curr. Genet. 29 1996 352 359
32. S. Michán, F. Lledías, and W. Hansberg Eukaryot. Cell 2 2003 798 808
33. J. Kamper, R. Kahmann, M. Bolker, L.J. Ma, T. Brefort, and B.J. Saville Nature 444 2006 97 101
34. D.R. Wysong, L. Christin, A.M. Sugar, P.W. Robbins, and R.D. Diamond Infect. Immun. 66 1998 1953 1961
35. M. Cuellar-Cruz, M. Briones-Martin-del-Campo, I. Canas-Villamar, J. Montalvo-Arredondo, L. Riego-Ruiz, I. Castano, and A. De Las Penas Eukaryot. Cell 7 2008 814 825
36. A. Díaz, P. Rangel, Y. Montes de Oca, F. Lledías, and W. Hansberg Free Radic. Biol. Med. 31 2001 1323 1333
37. M.A. Noventa-Jordao, R.M. Couto, M.H. Goldman, J. Aguirre, S. Iyer, A. Caplan, H.F. Terenzi, and G.H. Goldman Microbiology 145 Pt 11 1999 3229 3234
38. F. Lledías, P. Rangel, and W. Hansberg Free Radic. Biol. Med. 26 1999 1396 1404
39. S. Michán, F. Lledías, J.D. Baldwin, D.O. Natvig, and W. Hansberg Free Radic. Biol. Med. 33 2002 521 532
40. L. Kawasaki, D. Wysong, R. Diamond, and J. Aguirre J. Bacteriol. 179 1997 3284 3292
41. W. Hansberg, and J. Aguirre J. Theor. Biol. 142 1990 201 221
42. J. Aguirre, M. Rios-Momberg, D. Hewitt, and W. Hansberg Trends Microbiol. 13 2005 111 118
43. W. Hansberg, J. Aguirre, M. Rios-Momberg, P. Rangel, L. Peraza, Y. Montes de Oca, and N. Cano-Domínguez A.S.V.M. Stratford, P. van West, Stress in yeasts and filamentous fungi 2008 Academic Press Elsevier, London 235 257
44. V. Vega En busca de la función de la catalasa-peroxidasa de Neurospora crassa 2011 Universidad Naconal Autónoma de México UNAM, Mexico City Instituto de Fisiología Celular p. 75
45. N. Cano-Domínguez, K. Álvarez-Delfin, W. Hansberg, and J. Aguirre Eukaryot. Cell 7 2008 1352 1361
46. H. Diaz-Albiter, R. Mitford, F.A. Genta, M.R. Sant'Anna, and R.J. Dillon PLoS One 6 2011 e17486
47. T.A. Richards, D.M. Soanes, P.G. Foster, G. Leonard, C.R. Thornton, and N.J. Talbot Plant Cell 21 2009 1897 1911
48. L.J. Ma, A.S. Ibrahim, C. Skory, M.G. Grabherr, G. Burger, and M. Butler PLoS Genet. 5 2009 e1000549
49. S. Whelan, and N. Goldman Mol. Biol. Evol. 18 2001 691 699
50. A. Stamatakis Bioinformatics 22 2006 2688 2690
51. A. Stamatakis, P. Hoover, and J. Rougemont Syst. Biol. 57 2008 758 771
52. I. Fita, and M.G. Rossmann Proc. Natl. Acad. Sci. USA 82 1985 1604 1608
53. C.D. Putnam, A.S. Arvai, Y. Bourne, and J.A. Tainer J. Mol. Biol. 296 2000 295 309
54. P. Gouet, H.M. Jouve, and O. Dideberg J. Mol. Biol. 249 1995 933 954
55. G.N. Murshudov, W.R. Melik-Adamyan, A.I. Grebenko, V.V. Barynin, A.A. Vagin, B.K. Vainshtein, Z. Dauter, and K.S. Wilson FEBS Lett. 312 1992 127 131
56. X. Carpena, M. Soriano, M.G. Klotz, H.W. Duckworth, L.J. Donald, W. Melik-Adamyan, I. Fita, and P.C. Loewen Proteins 50 2003 423 436
57. I. Hara, N. Ichise, K. Kojima, H. Kondo, S. Ohgiya, H. Matsuyama, and I. Yumoto Biochemistry 46 2007 11 22
58. V. Jha, S. Louis, P. Chelikani, X. Carpena, L.J. Donald, I. Fita, and P.C. Loewen Biochemistry 50 2011 2101 2110
59. M. Bernroitner, M. Zamocky, P.G. Furtmuller, G.A. Peschek, and C. Obinger J. Exp. Bot. 60 2009 423 440
60. W. Schliebs, C. Wurtz, W.H. Kunau, M. Veenhuis, and H. Rottensteiner Eukaryot. Cell 5 2006 1490 1502
61. J. Switala, J.O. O'Neil, and P.C. Loewen Biochemistry 38 1999 3895 3901
62. S. Engelmann, C. Lindner, and M. Hecker J. Bacteriol. 177 1995 5598 5605
63. A. Schouten, K.B. Tenberge, J. Vermeer, J. Stewart, L. Wagemakers, B. Williamson, and J.A. van Kan Mol. Plant Pathol. 3 2002 227 238
64. J.A. Calera, S. Paris, M. Monod, A.J. Hamilton, J.P. Debeaupuis, M. Diaquin, R. Lopez-Medrano, F. Leal, and J.P. Latge Infect. Immun. 65 1997 4718 4724
65. V. Garre, U. Muller, and P. Tudzynski Mol. Plant Microbe Interact. 11 1998 772 783
66. T.N. Petersen, S. Brunak, G. von Heijne, and H. Nielsen Nat. Methods 8 2011 785 786
67. N.M. Fast, J.S. Law, B.A. Williams, and P.J. Keeling Eukaryot. Cell 2 2003 1069 1075
68. H. de Groot, O. Auferkamp, T. Bramey, K. de Groot, M. Kirsch, H.G. Korth, F. Petrat, and R. Sustmann Free Radic. Res. 40 2006 67 74
69. L. Domínguez, A. Sosa-Peinado, and W. Hansberg Arch. Biochem. Biophys. 500 2010 82 91
70. A. Díaz, E. Horjales, E. Rudino-Pinera, R. Arreola, and W. Hansberg J. Mol. Biol. 342 2004 971 985
71. J. Bravo, I. Fita, J.C. Ferrer, W. Ens, A. Hillar, J. Switala, and P.C. Loewen Protein Sci. 6 1997 1016 1023
72. M.J. Mate, M. Zamocky, L.M. Nykyri, C. Herzog, P.M. Alzari, C. Betzel, F. Koller, and I. Fita J. Mol. Biol. 286 1999 135 149
73. E. Pena-Soler, M.C. Vega, M. Wilmanns, and C. Williams Acta Crystallogr. D Biol. Crystallogr. 67 2011 690 698
74. G.N. Murshudov, A.I. Grebenko, V. Barynin, Z. Dauter, K.S. Wilson, B.K. Vainshtein, W. Melik-Adamyan, J. Bravo, J.M. Ferran, J.C. Ferrer, J. Switala, P.C. Loewen, and I. Fita J Biol Chem 271 1996 8863 8868
75. B.K. Vainshtein, W.R. Melik-Adamyan, V.V. Barynin, A.A. Vagin, A.I. Grebenko, V.V. Borisov, K.S. Bartels, I. Fita, and M.G. Rossmann J. Mol. Biol. 188 1986 49 61
76. J. Bravo, I. Fita, P. Gouet, H.M. Jouve, W. Melik-Adamyan, and G.N. Murshudov J.G. Scandalios, Oxidative Stress and the Molecular Biology of Antioxidant Defenses 1997 Cold Spring Harbor Laboratory Press New York
77. P. Chelikani, L.J. Donald, H.W. Duckworth, and P.C. Loewen Biochemistry 42 2003 5729 5735
78. M. Zamocky, C. Herzog, L.M. Nykyri, and F. Koller FEBS Lett. 367 1995 241 245
79. M. Zamocky, and F. Koller Prog. Biophys. Mol. Biol. 72 1999 19 66
80. F. Lledías, P. Rangel, and W. Hansberg J. Biol. Chem. 273 1998 10630 10637
81. P.C. Loewen, J. Switala, I. von Ossowski, A. Hillar, A. Christie, B. Tattrie, and P. Nicholls Biochemistry 32 1993 10159 10164
82. M. Alfonso-Prieto, P. Vidossich, A. Rodriguez-Fortea, X. Carpena, I. Fita, P.C. Loewen, and C. Rovira J. Phys. Chem. A 112 2008 12842 12848
83. P. Di Mascio, S. Kaiser, and H. Sies Arch. Biochem. Biophys. 274 1989 532 538
84. F. Lledías, and W. Hansberg Photochem. Photobiol. 70 1999 887 892
85. F. Lledías, and W. Hansberg Methods Enzymol. 319 2000 110 119
86. O.M. Lardinois, and P.G. Rouxhet Free Radic. Res. 20 1994 29 50
87. S.G. Kalko, J.L. Gelpi, I. Fita, and M. Orozco J. Am. Chem. Soc. 123 2001 9665 9672
88. P. Amara, P. Andreoletti, H.M. Jouve, and M.J. Field Protein Sci. 10 2001 1927 1935