-
1
-
-
79952414942
-
Global trends in molecular epidemiology of HIV-1 during 2000-2007
-
Hemelaar J, Gouws E, Ghys PD, Osmanov S, ((2011)) Global trends in molecular epidemiology of HIV-1 during 2000-2007. Aids 25:: 679--689.
-
(2011)
Aids
, vol.25
, pp. 679-689
-
-
Hemelaar, J.1
Gouws, E.2
Ghys, P.D.3
Osmanov, S.4
-
2
-
-
33749368316
-
Genetic characterization of human immunodeficiency virus type 1 from Beira, Mozambique
-
Parreira R, Piedade J, Domingues A, Lobao D, Santos M, et al. ((2006)) Genetic characterization of human immunodeficiency virus type 1 from Beira, Mozambique. Microbes Infect 8:: 2442--2451.
-
(2006)
Microbes Infect
, vol.8
, pp. 2442-2451
-
-
Parreira, R.1
Piedade, J.2
Domingues, A.3
Lobao, D.4
Santos, M.5
-
3
-
-
34247238154
-
HIV type 1 subtype C gag and nef diversity in Southern Africa
-
Bredell H, Martin DP, Van Harmelen J, Varsani A, Sheppard HW, et al. ((2007)) HIV type 1 subtype C gag and nef diversity in Southern Africa. AIDS Res Hum Retroviruses 23:: 477--481.
-
(2007)
AIDS Res Hum Retroviruses
, vol.23
, pp. 477-481
-
-
Bredell, H.1
Martin, D.P.2
van Harmelen, J.3
Varsani, A.4
Sheppard, H.W.5
-
4
-
-
39549122755
-
Subtype assignment and phylogenetic analysis of HIV type 1 strains in patients from Swaziland
-
Deho L, Walwema R, Cappelletti A, Sukati H, Sibandze D, et al. ((2008)) Subtype assignment and phylogenetic analysis of HIV type 1 strains in patients from Swaziland. AIDS Res Hum Retroviruses 24:: 323--325.
-
(2008)
AIDS Res Hum Retroviruses
, vol.24
, pp. 323-325
-
-
Deho, L.1
Walwema, R.2
Cappelletti, A.3
Sukati, H.4
Sibandze, D.5
-
5
-
-
39549093532
-
Rapid spread and genetic diversification of HIV type 1 subtype C in a rural area of southern Mozambique
-
Lahuerta M, Aparicio E, Bardaji A, Marco S, Sacarlal J, et al. ((2008)) Rapid spread and genetic diversification of HIV type 1 subtype C in a rural area of southern Mozambique. AIDS Res Hum Retroviruses 24:: 327--335.
-
(2008)
AIDS Res Hum Retroviruses
, vol.24
, pp. 327-335
-
-
Lahuerta, M.1
Aparicio, E.2
Bardaji, A.3
Marco, S.4
Sacarlal, J.5
-
6
-
-
72949104925
-
Evolution and molecular epidemiology of subtype C HIV-1 in Zimbabwe
-
Dalai SC, de Oliveira T, Harkins GW, Kassaye SG, Lint J, et al. ((2009)) Evolution and molecular epidemiology of subtype C HIV-1 in Zimbabwe. Aids 23:: 2523--2532.
-
(2009)
Aids
, vol.23
, pp. 2523-2532
-
-
Dalai, S.C.1
de Oliveira, T.2
Harkins, G.W.3
Kassaye, S.G.4
Lint, J.5
-
7
-
-
79952075443
-
HIV-1 Subtype C Phylodynamics in the Global Epidemic
-
Novitsky V, Wang R, Lagakos S, Essex M, ((2010)) HIV-1 Subtype C Phylodynamics in the Global Epidemic. Viruses 2:: 33--54.
-
(2010)
Viruses
, vol.2
, pp. 33-54
-
-
Novitsky, V.1
Wang, R.2
Lagakos, S.3
Essex, M.4
-
8
-
-
79956193969
-
Phylogenetic structure in African HIV-1 subtype C revealed by selective sequential pruning
-
Thomson MM, Fernandez-Garcia A, ((2011)) Phylogenetic structure in African HIV-1 subtype C revealed by selective sequential pruning. Virology 415:: 30--38.
-
(2011)
Virology
, vol.415
, pp. 30-38
-
-
Thomson, M.M.1
Fernandez-Garcia, A.2
-
9
-
-
0035835508
-
Genetic analysis of hiv type 1 strains in Bujumbura (burundi): predominance of subtype c variant
-
Koch N, Ndihokubwayo JB, Yahi N, Tourres C, Fantini J, et al. ((2001)) Genetic analysis of hiv type 1 strains in Bujumbura (burundi): predominance of subtype c variant. AIDS Res Hum Retroviruses 17:: 269--273.
-
(2001)
AIDS Res Hum Retroviruses
, vol.17
, pp. 269-273
-
-
Koch, N.1
Ndihokubwayo, J.B.2
Yahi, N.3
Tourres, C.4
Fantini, J.5
-
10
-
-
33846783070
-
HIV type 1 diversity and antiretroviral drug resistance mutations in Burundi
-
Vidal N, Niyongabo T, Nduwimana J, Butel C, Ndayiragije A, et al. ((2007)) HIV type 1 diversity and antiretroviral drug resistance mutations in Burundi. AIDS Res Hum Retroviruses 23:: 175--180.
-
(2007)
AIDS Res Hum Retroviruses
, vol.23
, pp. 175-180
-
-
Vidal, N.1
Niyongabo, T.2
Nduwimana, J.3
Butel, C.4
Ndayiragije, A.5
-
11
-
-
19644384510
-
Epidemiology and genetic characterization of HIV-1 isolates in the general population of Djibouti (Horn of Africa)
-
Maslin J, Rogier C, Berger F, Khamil MA, Mattera D, et al. ((2005)) Epidemiology and genetic characterization of HIV-1 isolates in the general population of Djibouti (Horn of Africa). J Acquir Immune Defic Syndr 39:: 129--132.
-
(2005)
J Acquir Immune Defic Syndr
, vol.39
, pp. 129-132
-
-
Maslin, J.1
Rogier, C.2
Berger, F.3
Khamil, M.A.4
Mattera, D.5
-
12
-
-
0030872776
-
HIV type 1 subtype C in Addis Ababa, Ethiopia
-
Abebe A, Kuiken CL, Goudsmit J, Valk M, Messele T, et al. ((1997)) HIV type 1 subtype C in Addis Ababa, Ethiopia. AIDS Res Hum Retroviruses 13:: 1071--1075.
-
(1997)
AIDS Res Hum Retroviruses
, vol.13
, pp. 1071-1075
-
-
Abebe, A.1
Kuiken, C.L.2
Goudsmit, J.3
Valk, M.4
Messele, T.5
-
13
-
-
0034693999
-
Identification of a genetic subcluster of HIV type 1 subtype C (C′) widespread in Ethiopia
-
Abebe A, Pollakis G, Fontanet AL, Fisseha B, Tegbaru B, et al. ((2000)) Identification of a genetic subcluster of HIV type 1 subtype C (C′) widespread in Ethiopia. AIDS Res Hum Retroviruses 16:: 1909--1914.
-
(2000)
AIDS Res Hum Retroviruses
, vol.16
, pp. 1909-1914
-
-
Abebe, A.1
Pollakis, G.2
Fontanet, A.L.3
Fisseha, B.4
Tegbaru, B.5
-
14
-
-
0034143822
-
HIV-1 subtype C in commerical sex workers in Addis Ababa, Ethiopia
-
Hussein M, Abebe A, Pollakis G, Brouwer M, Petros B, et al. ((2000)) HIV-1 subtype C in commerical sex workers in Addis Ababa, Ethiopia. J Acquir Immune Defic Syndr 23:: 120--127.
-
(2000)
J Acquir Immune Defic Syndr
, vol.23
, pp. 120-127
-
-
Hussein, M.1
Abebe, A.2
Pollakis, G.3
Brouwer, M.4
Petros, B.5
-
15
-
-
34247866387
-
Molecular epidemiology of HIV type 1 in treatment-naive patients in north Ethiopia
-
Kassu A, Fujino M, Matsuda M, Nishizawa M, Ota F, et al. ((2007)) Molecular epidemiology of HIV type 1 in treatment-naive patients in north Ethiopia. AIDS Res Hum Retroviruses 23:: 564--568.
-
(2007)
AIDS Res Hum Retroviruses
, vol.23
, pp. 564-568
-
-
Kassu, A.1
Fujino, M.2
Matsuda, M.3
Nishizawa, M.4
Ota, F.5
-
16
-
-
0032080574
-
Epidemic expansion of HIV type 1 subtype C and recombinant genotypes in Tanzania
-
Renjifo B, Chaplin B, Mwakagile D, Shah P, Vannberg F, et al. ((1998)) Epidemic expansion of HIV type 1 subtype C and recombinant genotypes in Tanzania. AIDS Res Hum Retroviruses 14:: 635--638.
-
(1998)
AIDS Res Hum Retroviruses
, vol.14
, pp. 635-638
-
-
Renjifo, B.1
Chaplin, B.2
Mwakagile, D.3
Shah, P.4
Vannberg, F.5
-
17
-
-
0037252711
-
HIV type 1 subtypes among bar and hotel workers in Moshi, Tanzania
-
Kiwelu IE, Renjifo B, Chaplin B, Sam N, Nkya WM, et al. ((2003)) HIV type 1 subtypes among bar and hotel workers in Moshi, Tanzania. AIDS Res Hum Retroviruses 19:: 57--64.
-
(2003)
AIDS Res Hum Retroviruses
, vol.19
, pp. 57-64
-
-
Kiwelu, I.E.1
Renjifo, B.2
Chaplin, B.3
Sam, N.4
Nkya, W.M.5
-
18
-
-
33745951838
-
Frequency of HIV type 1 dual infection and HIV diversity: analysis of low- and high-risk populations in Mbeya Region, Tanzania
-
Herbinger KH, Gerhardt M, Piyasirisilp S, Mloka D, Arroyo MA, et al. ((2006)) Frequency of HIV type 1 dual infection and HIV diversity: analysis of low- and high-risk populations in Mbeya Region, Tanzania. AIDS Res Hum Retroviruses 22:: 599--606.
-
(2006)
AIDS Res Hum Retroviruses
, vol.22
, pp. 599-606
-
-
Herbinger, K.H.1
Gerhardt, M.2
Piyasirisilp, S.3
Mloka, D.4
Arroyo, M.A.5
-
19
-
-
45749119998
-
Diversity of human immunodeficiency virus type 1 subtypes in Kagera and Kilimanjaro regions, Tanzania
-
Nyombi BM, Kristiansen KI, Bjune G, Muller F, Holm-Hansen C, ((2008)) Diversity of human immunodeficiency virus type 1 subtypes in Kagera and Kilimanjaro regions, Tanzania. AIDS Res Hum Retroviruses 24:: 761--769.
-
(2008)
AIDS Res Hum Retroviruses
, vol.24
, pp. 761-769
-
-
Nyombi, B.M.1
Kristiansen, K.I.2
Bjune, G.3
Muller, F.4
Holm-Hansen, C.5
-
20
-
-
79953763329
-
Prevalence of genotypic resistance to antiretroviral drugs in treatment-naive youths infected with diverse HIV type 1 subtypes and recombinant forms in Dar es Salaam, Tanzania
-
Mosha F, Urassa W, Aboud S, Lyamuya E, Sandstrom E, et al. ((2011)) Prevalence of genotypic resistance to antiretroviral drugs in treatment-naive youths infected with diverse HIV type 1 subtypes and recombinant forms in Dar es Salaam, Tanzania. AIDS Res Hum Retroviruses 27:: 377--382.
-
(2011)
AIDS Res Hum Retroviruses
, vol.27
, pp. 377-382
-
-
Mosha, F.1
Urassa, W.2
Aboud, S.3
Lyamuya, E.4
Sandstrom, E.5
-
21
-
-
12144288388
-
HIV type 1 pol gene diversity and archived nevirapine resistance mutation in pregnant women in Rwanda
-
Servais J, Lambert C, Karita E, Vanhove D, Fischer A, et al. ((2004)) HIV type 1 pol gene diversity and archived nevirapine resistance mutation in pregnant women in Rwanda. AIDS Res Hum Retroviruses 20:: 279--283.
-
(2004)
AIDS Res Hum Retroviruses
, vol.20
, pp. 279-283
-
-
Servais, J.1
Lambert, C.2
Karita, E.3
Vanhove, D.4
Fischer, A.5
-
22
-
-
0030779694
-
Serologic and phylogenetic characterization of HIV-1 subtypes in Uganda
-
Brennan CA, Lund JK, Golden A, Yamaguchi J, Vallari AS, et al. ((1997)) Serologic and phylogenetic characterization of HIV-1 subtypes in Uganda. Aids 11:: 1823--1832.
-
(1997)
Aids
, vol.11
, pp. 1823-1832
-
-
Brennan, C.A.1
Lund, J.K.2
Golden, A.3
Yamaguchi, J.4
Vallari, A.S.5
-
23
-
-
15644383725
-
A molecular epidemiologic survey of HIV in Uganda. HIV Variant Working Group
-
Rayfield MA, Downing RG, Baggs J, Hu DJ, Pieniazek D, et al. ((1998)) A molecular epidemiologic survey of HIV in Uganda. HIV Variant Working Group. Aids 12:: 521--527.
-
(1998)
Aids
, vol.12
, pp. 521-527
-
-
Rayfield, M.A.1
Downing, R.G.2
Baggs, J.3
Hu, D.J.4
Pieniazek, D.5
-
24
-
-
0034489924
-
Predominance of HIV-1 subtype A and D infections in Uganda
-
Hu DJ, Baggs J, Downing RG, Pieniazek D, Dorn J, et al. ((2000)) Predominance of HIV-1 subtype A and D infections in Uganda. Emerg Infect Dis 6:: 609--615.
-
(2000)
Emerg Infect Dis
, vol.6
, pp. 609-615
-
-
Hu, D.J.1
Baggs, J.2
Downing, R.G.3
Pieniazek, D.4
Dorn, J.5
-
25
-
-
33846217459
-
Genotypic variation in the pol gene of HIV type 1 in an antiretroviral treatment-naive population in rural southwestern Uganda
-
Gale CV, Yirrell DL, Campbell E, Van der Paal L, Grosskurth H, et al. ((2006)) Genotypic variation in the pol gene of HIV type 1 in an antiretroviral treatment-naive population in rural southwestern Uganda. AIDS Res Hum Retroviruses 22:: 985--992.
-
(2006)
AIDS Res Hum Retroviruses
, vol.22
, pp. 985-992
-
-
Gale, C.V.1
Yirrell, D.L.2
Campbell, E.3
van der Paal, L.4
Grosskurth, H.5
-
26
-
-
34249900484
-
Prevalence and genetic diversity of HIV type 1 subtypes A and D in women attending antenatal clinics in Uganda
-
Herbeck JT, Lyagoba F, Moore SW, Shindo N, Biryahwaho B, et al. ((2007)) Prevalence and genetic diversity of HIV type 1 subtypes A and D in women attending antenatal clinics in Uganda. AIDS Res Hum Retroviruses 23:: 755--760.
-
(2007)
AIDS Res Hum Retroviruses
, vol.23
, pp. 755-760
-
-
Herbeck, J.T.1
Lyagoba, F.2
Moore, S.W.3
Shindo, N.4
Biryahwaho, B.5
-
27
-
-
81755174499
-
HIV Type 1 Subtype Distribution, Multiple Infections, Sexual Networks, and Partnership Histories in Female Sex Workers in Kampala, Uganda
-
Ssemwanga D, Ndembi N, Lyagoba F, Bukenya J, Seeley J,et al. (2011) HIV Type 1 Subtype Distribution, Multiple Infections, Sexual Networks, and Partnership Histories in Female Sex Workers in Kampala, Uganda. AIDS Res Hum Retroviruses.
-
(2011)
AIDS Res Hum Retroviruses
-
-
Ssemwanga, D.1
Ndembi, N.2
Lyagoba, F.3
Bukenya, J.4
Seeley, J.5
-
28
-
-
80053293363
-
HIV-1 drug resistance in antiretroviral-naive individuals in sub-Saharan Africa after rollout of antiretroviral therapy: a multicentre observational study
-
Hamers RL, Wallis CL, Kityo C, Siwale M, Mandaliya K, et al. ((2011)) HIV-1 drug resistance in antiretroviral-naive individuals in sub-Saharan Africa after rollout of antiretroviral therapy: a multicentre observational study. Lancet Infect Dis 11:: 750--759.
-
(2011)
Lancet Infect Dis
, vol.11
, pp. 750-759
-
-
Hamers, R.L.1
Wallis, C.L.2
Kityo, C.3
Siwale, M.4
Mandaliya, K.5
-
29
-
-
2642538419
-
Genetic diversity and high proportion of intersubtype recombinants among HIV type 1-infected pregnant women in Kisumu, western Kenya
-
Yang C, Li M, Shi YP, Winter J, van Eijk AM, et al. ((2004)) Genetic diversity and high proportion of intersubtype recombinants among HIV type 1-infected pregnant women in Kisumu, western Kenya. AIDS Res Hum Retroviruses 20:: 565--574.
-
(2004)
AIDS Res Hum Retroviruses
, vol.20
, pp. 565-574
-
-
Yang, C.1
Li, M.2
Shi, Y.P.3
Winter, J.4
van Eijk, A.M.5
-
30
-
-
79952588246
-
Molecular characterization of HIV type 1 among HIV-infected respondents in a cohort being prepared for HIV Phase III vaccine clinical trials, Western Kenya
-
Oyaro M, Mbithi J, Oyugi F, Laten A, Anzala O, et al. ((2011)) Molecular characterization of HIV type 1 among HIV-infected respondents in a cohort being prepared for HIV Phase III vaccine clinical trials, Western Kenya. AIDS Res Hum Retroviruses 27:: 257--264.
-
(2011)
AIDS Res Hum Retroviruses
, vol.27
, pp. 257-264
-
-
Oyaro, M.1
Mbithi, J.2
Oyugi, F.3
Laten, A.4
Anzala, O.5
-
31
-
-
84860489082
-
HIV Type 1 gag Genetic Diversity Among Antenatal Clinic Attendees in North Rift Valley, Kenya
-
Nyagaka B, Kiptoo MK, Lihana RW, Khamadi SA, Makokha EP,et al. (2011) HIV Type 1 gag Genetic Diversity Among Antenatal Clinic Attendees in North Rift Valley, Kenya. AIDS Res Hum Retroviruses.
-
(2011)
AIDS Res Hum Retroviruses
-
-
Nyagaka, B.1
Kiptoo, M.K.2
Lihana, R.W.3
Khamadi, S.A.4
Makokha, E.P.5
-
32
-
-
30344438528
-
No evidence for rapid subtype C spread within an epidemic in which multiple subtypes and intersubtype recombinants circulate
-
Rainwater S, DeVange S, Sagar M, Ndinya-Achola J, Mandaliya K, et al. ((2005)) No evidence for rapid subtype C spread within an epidemic in which multiple subtypes and intersubtype recombinants circulate. AIDS Res Hum Retroviruses 21:: 1060--1065.
-
(2005)
AIDS Res Hum Retroviruses
, vol.21
, pp. 1060-1065
-
-
Rainwater, S.1
DeVange, S.2
Sagar, M.3
Ndinya-Achola, J.4
Mandaliya, K.5
-
33
-
-
70349279199
-
Genetic diversity of HIV type 1 along the coastal strip of Kenya
-
Khamadi SA, Lihana RW, Osman S, Mwangi J, Muriuki J, et al. ((2009)) Genetic diversity of HIV type 1 along the coastal strip of Kenya. AIDS Res Hum Retroviruses 25:: 919--923.
-
(2009)
AIDS Res Hum Retroviruses
, vol.25
, pp. 919-923
-
-
Khamadi, S.A.1
Lihana, R.W.2
Osman, S.3
Mwangi, J.4
Muriuki, J.5
-
34
-
-
84858048436
-
HIV Type 1 in a Rural Coastal Town in Kenya Shows Multiple Introductions with Many Subtypes and Much Recombination
-
Hue S, Hassan AS, Nabwera H, Sanders EJ, Pillay D, et al. ((2012)) HIV Type 1 in a Rural Coastal Town in Kenya Shows Multiple Introductions with Many Subtypes and Much Recombination. AIDS Res Hum Retroviruses 28:: 220--224.
-
(2012)
AIDS Res Hum Retroviruses
, vol.28
, pp. 220-224
-
-
Hue, S.1
Hassan, A.S.2
Nabwera, H.3
Sanders, E.J.4
Pillay, D.5
-
35
-
-
0032946954
-
Subtypes of human immunodeficiency virus type 1 and disease stage among women in Nairobi, Kenya
-
Neilson JR, John GC, Carr JK, Lewis P, Kreiss JK, et al. ((1999)) Subtypes of human immunodeficiency virus type 1 and disease stage among women in Nairobi, Kenya. J Virol 73:: 4393--4403.
-
(1999)
J Virol
, vol.73
, pp. 4393-4403
-
-
Neilson, J.R.1
John, G.C.2
Carr, J.K.3
Lewis, P.4
Kreiss, J.K.5
-
36
-
-
33845430851
-
HIV type 1 subtypes among STI patients in Nairobi: a genotypic study based on partial pol gene sequencing
-
Lihana RW, Khamadi SA, Kiptoo MK, Kinyua JG, Lagat N, et al. ((2006)) HIV type 1 subtypes among STI patients in Nairobi: a genotypic study based on partial pol gene sequencing. AIDS Res Hum Retroviruses 22:: 1172--1177.
-
(2006)
AIDS Res Hum Retroviruses
, vol.22
, pp. 1172-1177
-
-
Lihana, R.W.1
Khamadi, S.A.2
Kiptoo, M.K.3
Kinyua, J.G.4
Lagat, N.5
-
37
-
-
84858066531
-
HIV Type 1 Subtype Surveillance in Central Kenya
-
Kageha S, Lihana RW, Okoth V, Mwau M, Okoth FA, et al. ((2012)) HIV Type 1 Subtype Surveillance in Central Kenya. AIDS Res Hum Retroviruses 28:: 228--231.
-
(2012)
AIDS Res Hum Retroviruses
, vol.28
, pp. 228-231
-
-
Kageha, S.1
Lihana, R.W.2
Okoth, V.3
Mwau, M.4
Okoth, F.A.5
-
38
-
-
26444445150
-
HIV type 1 subtypes in circulation in northern Kenya
-
Khamadi SA, Ochieng W, Lihana RW, Kinyua J, Muriuki J, et al. ((2005)) HIV type 1 subtypes in circulation in northern Kenya. AIDS Res Hum Retroviruses 21:: 810--814.
-
(2005)
AIDS Res Hum Retroviruses
, vol.21
, pp. 810-814
-
-
Khamadi, S.A.1
Ochieng, W.2
Lihana, R.W.3
Kinyua, J.4
Muriuki, J.5
-
39
-
-
58149125276
-
HIV type 1 genetic diversity in Moyale, Mandera, and Turkana based on env-C2-V3 sequences
-
Khamadi SA, Lihana RW, Mwaniki DL, Kinyua J, Lagat N, et al. ((2008)) HIV type 1 genetic diversity in Moyale, Mandera, and Turkana based on env-C2-V3 sequences. AIDS Res Hum Retroviruses 24:: 1561--1564.
-
(2008)
AIDS Res Hum Retroviruses
, vol.24
, pp. 1561-1564
-
-
Khamadi, S.A.1
Lihana, R.W.2
Mwaniki, D.L.3
Kinyua, J.4
Lagat, N.5
-
40
-
-
10744226019
-
Recombination of HIV type 1C (C′/C″) in Ethiopia: possible link of EthHIV-1C′ to subtype C sequences from the high-prevalence epidemics in India and Southern Africa
-
Pollakis G, Abebe A, Kliphuis A, De Wit TF, Fisseha B, et al. ((2003)) Recombination of HIV type 1C (C′/C″) in Ethiopia: possible link of EthHIV-1C′ to subtype C sequences from the high-prevalence epidemics in India and Southern Africa. AIDS Res Hum Retroviruses 19:: 999--1008.
-
(2003)
AIDS Res Hum Retroviruses
, vol.19
, pp. 999-1008
-
-
Pollakis, G.1
Abebe, A.2
Kliphuis, A.3
de Wit, T.F.4
Fisseha, B.5
-
41
-
-
27544496497
-
An automated genotyping system for analysis of HIV-1 and other microbial sequences
-
de Oliveira T, Deforche K, Cassol S, Salminen M, Paraskevis D, et al. ((2005)) An automated genotyping system for analysis of HIV-1 and other microbial sequences. Bioinformatics 21:: 3797--3800.
-
(2005)
Bioinformatics
, vol.21
, pp. 3797-3800
-
-
de Oliveira, T.1
Deforche, K.2
Cassol, S.3
Salminen, M.4
Paraskevis, D.5
-
42
-
-
0031574072
-
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG, ((1997)) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:: 4876--4882.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
43
-
-
0034848170
-
DAMBE: software package for data analysis in molecular biology and evolution
-
Xia X, Xie Z, ((2001)) DAMBE: software package for data analysis in molecular biology and evolution. J Hered 92:: 371--373.
-
(2001)
J Hered
, vol.92
, pp. 371-373
-
-
Xia, X.1
Xie, Z.2
-
44
-
-
0031002417
-
Likelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignment
-
Strimmer K, von Haeseler A, ((1997)) Likelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignment. Proc Natl Acad Sci U S A 94:: 6815--6819.
-
(1997)
Proc Natl Acad Sci U S A
, vol.94
, pp. 6815-6819
-
-
Strimmer, K.1
von Haeseler, A.2
-
45
-
-
0036205377
-
TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing
-
Schmidt HA, Strimmer K, Vingron M, von Haeseler A, ((2002)) TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18:: 502--504.
-
(2002)
Bioinformatics
, vol.18
, pp. 502-504
-
-
Schmidt, H.A.1
Strimmer, K.2
Vingron, M.3
von Haeseler, A.4
-
46
-
-
79959944060
-
Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing
-
Sanchez R, Serra F, Tarraga J, Medina I, Carbonell J, et al. ((2011)) Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing. Nucleic Acids Res 39:: W470--474.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Sanchez, R.1
Serra, F.2
Tarraga, J.3
Medina, I.4
Carbonell, J.5
-
47
-
-
45849154165
-
jModelTest: phylogenetic model averaging
-
Posada D, ((2008)) jModelTest: phylogenetic model averaging. Mol Biol Evol 25:: 1253--1256.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1253-1256
-
-
Posada, D.1
-
48
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S, Gascuel O, ((2003)) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:: 696--704.
-
(2003)
Syst Biol
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
49
-
-
23144433822
-
PHYML Online-a web server for fast maximum likelihood-based phylogenetic inference
-
Guindon S, Lethiec F, Duroux P, Gascuel O, ((2005)) PHYML Online-a web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Res 33:: W557--559.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Guindon, S.1
Lethiec, F.2
Duroux, P.3
Gascuel, O.4
-
50
-
-
33745256005
-
Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative
-
Anisimova M, Gascuel O, ((2006)) Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative. Syst Biol 55:: 539--552.
-
(2006)
Syst Biol
, vol.55
, pp. 539-552
-
-
Anisimova, M.1
Gascuel, O.2
-
51
-
-
84872829798
-
-
Rambaut A (2009) FigTree v1.3.1: Tree Figure Drawing Tool. Available from http://treebioedacuk/software/figtree/. Accessed 2012 April 20.
-
-
-
Rambaut, A.1
-
52
-
-
84872830615
-
-
Ray S Simplot v2.5.0. Available from: http://sray.med.som.jhmi.edu/SCRoftware/simplot/. Accessed 2012 April 20.
-
-
-
-
53
-
-
0036021407
-
Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data
-
Drummond AJ, Nicholls GK, Rodrigo AG, Solomon W, ((2002)) Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data. Genetics 161:: 1307--1320.
-
(2002)
Genetics
, vol.161
, pp. 1307-1320
-
-
Drummond, A.J.1
Nicholls, G.K.2
Rodrigo, A.G.3
Solomon, W.4
-
54
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond AJ, Rambaut A, ((2007)) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7:: 214.
-
(2007)
BMC Evol Biol
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
56
-
-
17744381574
-
Bayesian coalescent inference of past population dynamics from molecular sequences
-
Drummond AJ, Rambaut A, Shapiro B, Pybus OG, ((2005)) Bayesian coalescent inference of past population dynamics from molecular sequences. Mol Biol Evol 22:: 1185--1192.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 1185-1192
-
-
Drummond, A.J.1
Rambaut, A.2
Shapiro, B.3
Pybus, O.G.4
-
58
-
-
84872828827
-
-
Rambaut A, Drummond A (2007) Tracer v1.4. Available from http://beastbioedacuk/Tracer. Accessed 2012 April 20.
-
-
-
Rambaut, A.1
Drummond, A.2
-
59
-
-
80053959139
-
SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics
-
Bielejec F, Rambaut A, Suchard MA, Lemey P, ((2011)) SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics. Bioinformatics 27:: 2910--2912.
-
(2011)
Bioinformatics
, vol.27
, pp. 2910-2912
-
-
Bielejec, F.1
Rambaut, A.2
Suchard, M.A.3
Lemey, P.4
-
60
-
-
53549104131
-
Origin and evolutionary history of HIV-1 subtype C in Brazil
-
Bello G, Passaes CP, Guimaraes ML, Lorete RS, Matos Almeida SE, et al. ((2008)) Origin and evolutionary history of HIV-1 subtype C in Brazil. AIDS 22:: 1993--2000.
-
(2008)
AIDS
, vol.22
, pp. 1993-2000
-
-
Bello, G.1
Passaes, C.P.2
Guimaraes, M.L.3
Lorete, R.S.4
Matos Almeida, S.E.5
-
61
-
-
70249113753
-
Spatial phylodynamics of HIV-1 epidemic emergence in east Africa
-
Gray RR, Tatem AJ, Lamers S, Hou W, Laeyendecker O, et al. ((2009)) Spatial phylodynamics of HIV-1 epidemic emergence in east Africa. Aids 23:: F9--F17.
-
(2009)
Aids
, vol.23
-
-
Gray, R.R.1
Tatem, A.J.2
Lamers, S.3
Hou, W.4
Laeyendecker, O.5
-
62
-
-
77949517192
-
The HIV-1 subtype C epidemic in South America is linked to the United Kingdom
-
de Oliveira T, Pillay D, Gifford RJ, ((2010)) The HIV-1 subtype C epidemic in South America is linked to the United Kingdom. PLoS ONE 5:: e9311.
-
(2010)
PLoS ONE
, vol.5
-
-
de Oliveira, T.1
Pillay, D.2
Gifford, R.J.3
-
63
-
-
53549119677
-
On the origin of HIV-1 subtype C in South America
-
Fontella R, Soares MA, Schrago CG, ((2008)) On the origin of HIV-1 subtype C in South America. AIDS 22:: 2001--2011.
-
(2008)
AIDS
, vol.22
, pp. 2001-2011
-
-
Fontella, R.1
Soares, M.A.2
Schrago, C.G.3
-
64
-
-
84872828491
-
-
Fransen S, Ong'ayo A (2010) Migration in Burundi: History, Current Trends, and Future Prospects. Paper Series: Migration and Development Country Profiles Maastricht: Maastricht Graduate School of Governance Available from http://mgsog.merit.unu.edu/ISacademie/docs/CR_burundi.pdf. Accessed 2012 April 20.
-
-
-
Fransen, S.1
Ong'ayo, A.2
-
65
-
-
0035902954
-
Timing of the HIV-1 subtype C epidemic in Ethiopia based on early virus strains and subsequent virus diversification
-
Abebe A, Lukashov VV, Pollakis G, Kliphuis A, Fontanet AL, et al. ((2001)) Timing of the HIV-1 subtype C epidemic in Ethiopia based on early virus strains and subsequent virus diversification. AIDS 15:: 1555--1561.
-
(2001)
AIDS
, vol.15
, pp. 1555-1561
-
-
Abebe, A.1
Lukashov, V.V.2
Pollakis, G.3
Kliphuis, A.4
Fontanet, A.L.5
-
66
-
-
0034934937
-
Timing of the introduction into Ethiopia of subcluster C′ of HIV type 1 subtype C
-
Abebe A, Lukashov VV, Rinke De Wit TF, Fisseha B, Tegbaru B, et al. ((2001)) Timing of the introduction into Ethiopia of subcluster C′ of HIV type 1 subtype C. AIDS Res Hum Retroviruses 17:: 657--661.
-
(2001)
AIDS Res Hum Retroviruses
, vol.17
, pp. 657-661
-
-
Abebe, A.1
Lukashov, V.V.2
Rinke de Wit, T.F.3
Fisseha, B.4
Tegbaru, B.5
-
67
-
-
77953913628
-
Chronology and evolution of the HIV-1 subtype C epidemic in Ethiopia
-
Tully DC, Wood C, ((2010)) Chronology and evolution of the HIV-1 subtype C epidemic in Ethiopia. Aids 24:: 1577--1582.
-
(2010)
Aids
, vol.24
, pp. 1577-1582
-
-
Tully, D.C.1
Wood, C.2
-
68
-
-
77954938172
-
Differences in HIV type 1 RNA plasma load profile of closely related cocirculating Ethiopian subtype C strains: C and C′
-
Ayele W, Mekonnen Y, Messele T, Mengistu Y, Tsegaye A, et al. ((2010)) Differences in HIV type 1 RNA plasma load profile of closely related cocirculating Ethiopian subtype C strains: C and C′. AIDS Res Hum Retroviruses 26:: 805--813.
-
(2010)
AIDS Res Hum Retroviruses
, vol.26
, pp. 805-813
-
-
Ayele, W.1
Mekonnen, Y.2
Messele, T.3
Mengistu, Y.4
Tsegaye, A.5
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