Prevalence and genetic diversity of HIV type 1 subtypes A and D in women attending antenatal clinics in Uganda

AIDS Research and Human Retroviruses

Volumn 23, Issue 5, 2007, Pages 755-760

  Herbeck, Joshua T ^a   Lyagoba, Frederick ^a,b   Moore, Sarah W ^a,c   Shindo, Nice ^a,d   Biryahwaho, Benon ^b   Kaleebu, Pontiano ^b   Mullins, James I ^a  

^a UNIVERSITY OF WASHINGTON SCHOOL OF MEDICINE   (United States)

^b UGANDA VIRUS RESEARCH INSTITUTE   (Uganda)

^c UNIVERSITY OF UTAH SCHOOL OF MEDICINE   (United States)

^d SOUTHERN RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; VIRUS RNA;

ADULT; ARTICLE; FEMALE; GENETIC DISTANCE; GENETIC VARIABILITY; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS 1 INFECTION; HUMAN IMMUNODEFICIENCY VIRUS INFECTED PATIENT; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; HUMAN IMMUNODEFICIENCY VIRUS PREVALENCE; MAJOR CLINICAL STUDY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; POLYMERASE CHAIN REACTION; PREGNANCY; PRENATAL CARE; PRIORITY JOURNAL; UGANDA; VIRUS RECOMBINANT;

EID: 34249900484     PISSN: 08892229     EISSN: None     Source Type: Journal    
DOI: 10.1089/aid.2006.0237.A     Document Type: Article

References (17)

1. Rayfield MA, et al.: A molecular epidemiologic survey of HIV in Uganda. HIV Variant Working Group. AIDS 1998;12:521-527.
2. Bruce C, et al.: Presence of multiple genetic subtypes of HIM-1 proviruses in Uganda. AIDS Res Hum Retroviruses 1994;10:1543-1550.
3. Hu DJ, et al.: Predominance of HIV-1 subtype A and D infections in Uganda. Emerg Infect Dis 2000;6:609-615.
4. Yirrell D. Kaleebu P, Morgan D, Hutchinson S, and Whitworth J: HIV-1 subtype dynamics over 10 years in a rural Ugandan cohort. Int J STD AIDS 2004;15:103-106.
5. Okware S, Opio A. Musinguzi J, and Waibale P: Fighting HIV/AIDS: Is success possible? Bull World Health Org 2001;79:1113-1120.
6. Delwart EL, et al.: Genetic relationships determined by a DNA heteroduplex mobility assay: Analysis of HIV-1 env genes. Science 1993;262:1257-1261.
7. Delwart EL, Sheppard HW, Walker BD. Goudsmit J, and Mullins JI: Human immunodeficiency virus type 1 evolution in vivo tracked by DNA heteroduplex mobility assays. J Virol 1994;68:6672-6683.
8. Leitner T, et al. (eds.). HIV Sequence Compendium. 2003. (Los Alamos National Laboratory. Theoretical Biology and Biophysics. Los Alamos. NM, 2004.
9. Guindon S and Gascuel O: A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 2003;52:696-704.
10. Martin D and Rybicki E: RDP: Detection of recombination amongst aligned sequences. Bioinformatics 2000;16:562-563.
11. Salminen MO. et al.: Recovery of virtually full length HIV-1 provirus of diverse subtypes from primary virus cultures using the PCR. Virology 1995;213:80-86.
12. Martin DP, Williamson C, and Posada D: RDP2: Recombination detection and analysis from sequence alignments. Bioinformatics 2005;21:260-262.
13. Swofford DL: PAUP 4.0b 10. Sinauer Associates, Inc., Sunderland, MA, 1999.
14. Rambaut A: Estimating the rate of molecular evolution: Incorporating non-contemporaneous sequences into maximum likelihood phylogenies. Bioinformatics 2000;16:395-399.
15. Hu DJ, et al.: The emerging genetic diversity of HIV. The importance of global surveillance for diagnostics, research, and prevention. JAMA 1996:275:210-216.
16. Herbeck JT, et al.: Human immunodeficiency virus type 1 env evolves toward ancestral states upon transmission to a new host. J Virol 2006;80:1637-1644.
17. Derdeyn CA, et al.: Envelope-constrained neutralization-sensitive HIV-1 after heterosexual transmission. Science 2004:303:2019-2022.