Cytogenetic and molecular markers reveal the complexity of the genus Piabina Reinhardt, 1867 (Characiformes: Characidae)

Neotropical Ichthyology

Volumn 10, Issue 2, 2012, Pages 329-340

  Pazian, Marlon Felix ^a   Pereira, Luiz Henrique Garcia ^a   Shimabukuru Dias, Cristiane Kioko ^a   Oliveira, Claudio ^a   Foresti, Fausto ^a  

^a SÃO PAULO STATE UNIVERSITY UNESP   (Brazil)

Author keywords

18S rDNA; 5S rDNA; DNA barcoding; Fish; Freshwater fishes; MtDNA

Indexed keywords

CHARACIDAE; CHARACIFORMES; PISCES;

EID: 84864480598     PISSN: 16796225     EISSN: None     Source Type: Journal    
DOI: 10.1590/S1679-62252012005000015     Document Type: Article

References (70)

1. Almeida-Toledo, L. F., F. Foresti & S. A. Toledo-Filho. 2000. Karyotypic evolution in Neotropical freshwater fish. Chromosome Today, 13: 169-182.
2. Almeida-Toledo, L. F., C. Ozouf-Costaz, F. Foresti, C. Bonilho, F. Porto-Foresti & M. F. Z. Daniel-Silva. 2002. Conservation of the 5S-bearing chromosome pair and co-localization with major rDNA clusters in five species of Astyanax (Pisces, Characidae). Animal Cytogenetics and Genome Research, 97: 229-233.
3. Alves-Costa, F. A., A. P. Wasko, C. Oliveira, F. Foresti & C. Martins. 2006. Genomic organization and evolution of the 5S ribossomal DNA in Tilapiini fishes. Genetica, 127: 243-252.
4. Brum, M. J. I., C. F. M. L. Muratori, P. R. D. Lopes & P. R. G. Viana. 1998. A ictiofauna do sistema lagunar de Maricá (RJ). Acta Biológica Leopoldensia, 16: 45-55.
5. Cabrero, J., A. Bugrov, E. Warchalowska-Sliwa, M. D. López-León, F. Perfectti & J. P. M. Camacho. 2003. Comparative FISH analysis in five species of Eyprepocnemidine grasshoppers. Heredity, 90: 377-381.
6. Cabrero, J. & J. P. Camacho. 2008. Location and expression of ribosomal RNA genes in grasshoppers: abundance of silent and cryptic loci. Chromosome Research, 16: 595-607.
7. Drouin, G. & M. Moniz de Sá. 1995. The concerted evolution of 5S ribosomal genes linked to the repeat units of other multigene families. Molecular Biology Evolution, 12: 481-493.
8. Edgar, R. C. 2004. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics, 5: 113.
9. Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39: 783-791.
10. Ferro, D. A. M., D. M. Néo, O. Moreira-Filho & L. A. C. Bertollo. 2001. Nucleolar organizing regions, 18S and 5S in Astyanax scabripinnis (Pisces, Characidae): Population distribution and Functional diversity. Genetica, 110: 147-153.
11. Foresti, F., L. F. Almeida-Toledo & S. A., Toledo.1981. Polymorphic nature of nucleolus organizer regions in fishes. Cytogenetics and Cell Genetics, 31: 137-144.
12. Galetti, P. M. 1998. Chromosome diversity in Neotropical fishes: NOR studies. Italian Journal of Zoology, 65: 53-56.
13. Gold, J. R., C. Y. Li, N. S. Shipley & P. K. Powers. 1990. Improved methods for working with fish chromosomes with a review of metaphase chromosome banding. Journal Fish Biology, 37: 563-575.
14. Gromicho, M. & M. J. Collares-Pereira. 2004. Polymorphism of major ribosomal gene chromosomal sites (NOR-phenotypes) in the hybridogenetic fish Squalius alburnoides complex (Cyprinidae) assessed through crossing experiments. Genetica, 122: 291-302.
15. Guillén, A. K., Y. Hirai, T. Tanoue & H. Hirai. 2004. Transcriptional repression mechanisms of nucleolus organizer regions (NORs) in humans and chimpanzees. Chromosome Research, 12: 225-237.
16. Hatanaka, T. & P. M. Galetti. 2004. Mapping of the 18S and 5S ribosomal RNA genes in the fish Prochilodus argenteus Agassiz, 1829 (Characiformes, Prochilodontidae). Genetica, 122: 239-244.
17. Hebert, P. D. N., A. Cywinska, S. L. Ball & J. R. deWaard. 2003. Biological identifications through DNA barcodes. Proceedins of the Royal Society London Biological, 270: 313-321.
18. Howell, W. M. & D. A. Black.1980. Controlled silver-staining of nucleolus organizer regions with a protective colloidal developer: a 1-step method. Experimentia, 36: 1014-1015.
19. Kimura, M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16: 111-120.
20. Jesus, C. M., P. M. Galetti, S. R. Valentini & O. Moreira-Filho. 2003. Molecular characterization and chromosomal localization of two families of satellite DNA in Prochilodus lineatus (Pisces, Prochilodontidae), a species with B chromosomes. Genetica, 118: 25-32.
21. Lara, A., J. L. Ponce de Leon, R. Rodriguez, D. Casane, G. Cote, L. Bernatchez & E. Garcia-Machado. 2010. DNA barcoding of Cuban freshwater fishes: evidence for cryptic species and taxonomic conflicts. Molecular Ecology Resources, 10: 421-430.
22. Levan, A., K. Fredga & A. A. Sandberg. 1964. Nomenclature for centromeric position of chromosomes. Hereditas, 52: 201-220.
23. Lowe Mc Connell, R. H. 1999. Estudo Ecológico de comunidades de peixes tropicais, São Paulo, Editora da Universidade de São Paulo, 534p.
24. Lucchini, S., I. Nardi, G. Barsacchi, R. Batistoni & F. Andronico. 1993. Molecular cytogenetics of the ribosomal (18S + 28S and 5S) DNA loci in primitive and advanced urodele amphibians. Genome, 36: 762-773.
25. Mäkinem, A., C. Zijlstra, N. A. De Haan, C. H. M. Mellink & A. A. Bosma. 1997. Localization of 18S plus 28S and 5S ribosomal RNA genes in the dog by fluorescence in situ hybridization. Cytogenetics and Cell Genetics, 78: 231-235.
26. Mantovani, M., L. D. S. Abel, C. A. Mestriner & O. Moreira-Filho. 2000. Accentuated polimorphism of heterocromatinand nuclear organizer regions in Astyanax scabripinnis (Pisces, Characidae): tools for understanding karyotype evolution. Genetica, 109: 161-168.
27. Mantovani, M., L. D. S. Abel & O. Moreira-Filho. 2005. Conserved 5S e variable 45S rDNA chromosomal localization revelead by FISH in Astyanax scabripinnis (Pisces, Characidae). Genetica, 123: 211-216.
28. Martins, C. & P. M. Galetti. 1999. Chromosomal localization of 5S rDNA genes in Leporinus fish (Anostomidae, Characiformes). Chromosome Research, 7: 363-367.
29. Martins, C. & A. P. Wasko. 2004. Organization and evolution of 5s ribosomal DNA in the fish genome. Pp. 289-318. In: Willians, C. R. (Ed.), Focus on Genome Research. Hauppauge, NY, USA, Nova Science Publishers, 424p.
30. Mazzei, F., L. Ghigliotti, C. Bonillo, J. P. Coutanceau, C. Ozouf-Costaz & E. Pisano. 2004. Chromosomal patterns of major 5S ribosomal DNA in six icefish species (Perciformes, Notothenioidei, Channichthyidae). Polar Biology, 28: 47-55.
31. Morán, P., J. L. Martínez, E. Garcia-Vásquez & A. M. Pendás. 1996. Sex linkage of 5S rDNA in rainbow trout (Oncorhynchus mykiss). Cytogenetics and Cell Genetics, 75: 145-150
32. Nguyen, H. D. T. & K. A. Seifert. 2008. Description and DNA barcoding of three new species of Leohumicola from South Africa and the United States. Personia, 21: 57-98.
33. Nirchio, M., & C. Oliveira. 2006. Citogenetica de Peces. Universidad de Oriente, Venezuela, 216p.
34. Oliveira, C., L. F. Almeida-Toledo, F. Foresti, H. A. Britski & S. A. Toledo-Filho. 1988 Chromosome formulae of Neotropical freshwater fishes. Revista Brasileira de Genética, 11: 577-624.
35. Oliveira, C., L. Almeida-Toledo & F. Foresti. 2005. Karyotypic evolution in Neotropical fishes. Pp. 1-49. In: Pisano, E., C. Ozouf-Costaz, F. Foresti & B. G. Kapoor (Eds.). Fish Cytogenetics. Enfild Science Publisher Inc., 518p
36. Oliveira, C., F. Foresti & A.W.S. Hilsdorf. 2009. Genetics of neotropical fish: from chromosomes to populations. Fish Physiology Biochemistry, 35: 81-100.
37. Oliveira, C. & J. M. Wright. 1998. Molecular cytogenetic analysis of heterochromatin in the chromosomes of tilapia, Oreochromis niloticus (Teleostei: Cichlidae). Chromosome Research, 6: 11-205.
38. Ornelas-Garcia, C.P., O. Dominguez-Dominguez & I. Doadrio. 2008. Evolutionary history of the fish genus Astyanax Baird & Girard (1854) (Actynopterigii, Characidae) in Mesoamerica reveals multiple morphological homoplasies. BMC Evolutionary Biology, 8: 340.
39. Pansonato-Alves, J. C., M. R. Vicari, C. Oliveira & F. Foresti. 2011. Chromosomal diversification in populations of Characidium cf. gomesi (Teleostei: Crenuchidae). Journal of Fish Biology, 78: 183-194.
40. Pendás, A. M., P. Móran, J. P. Freije & E. Garcia-Vásquez. 1994. Chromosomal location and nucleotide sequence of two tanden repeats of the Atlantic salmon 5S rDNA. Cytogenetics and Cell Genetics, 67: 31-36.
41. Pereira, L. H. G., G. M. G. Maia, R. Hanner, F. Foresti & C. Oliveira. 2011. DNA barcodes discriminates freshwater fishes from the Paraíba do Sul river basin, São Paulo, Brazil. Mitochondrial DNA, 21: 1-9.
42. Peres, W. A. M., L. A. C. Bertollo & O. Moreira-Filho. 2007. Comparative cytogenetics between three Characidae fish species from the São Francisco River basin. Caryologia, 60: 64-68.
43. Peres, W. A. M., L. A. C. Bertollo & O. Moreira-Filho. 2008. Physical mapping of the 18S and 5s ribosomal genes in nine Characidae species (Teleostei, Characiformes). Genetics and Molecular Biology, 1: 222-226.
44. Pinkel, D., T. Straume & J. W. Gray. 1986, Cytogenetic analysis using quantitative, high sensitivity, fluorescence hybridization. Proceedings of the National Academy of Sciences of the United Estates of America, 83: 2934-2938.
45. Portela, A. L. B. S., P. M. Galetti & L. A. C. Bertollo. 1988. Considerations on the Chromosome Evolution of Tetragonopterinae (Pisces, Characidae). Revista Brasileira de Genética, 11: 307-316.
46. Reis, R. E., S. O. kullander, & C. Ferraris. 2003. Check List of freshwater Fishes of South and Central America, Porto Alegre, Edipucrs, 729p.
47. Rooney, A. P. & T. J. Ward. 2005. Evolution of a large ribosomal RNA multigene family in filamentous fungi: Birth and death of a concerted evolution paradigm. Proceedings of the National Academy of Sciences of the United Estates of America, 102: 5084-5089.
48. Roussel, P., C. André, L. Comai & D. Hernandez-Verdun. 1996. The rDNA transcription machinery is assembled during mitosis in active NORs and absent in inactive NORs. The Journal of Cell Biology, 133: 235-246.
49. Sajdak, S. L., K. M. Reed & R. B. Phillips. 1998. Intraindividual and interspecies variation in the 5S rDNA of coregonid fish. Journal of Molecular Evolution, 46: 680-688.
50. Schaefer, S. A. 1998. Conflict and resolution impact of new taxa on philogenetic studies of Neotropical cascudinhos (Siluroidea: Loricariidae). Pp. 375-400. In: Malabarba, L. R., R. E. Reis, R. P. Vari, Z. M. Lucena & C. A. S. Lucena (Eds.). Phylogeny and classification of Neotropical fishes. Porto Alegre, EDIPUCRS, 603p.
51. Schmid, M., L. Vitelli & R. Batistoni. 1987. Chromosome banding in Amphibia. XI. Constitutive heterochromatin, nucleolus organizers, 18S+28S and 5S ribosomal RNA genes in Ascaphidae, Pipidae, Discoglossidae and Pelobatidae. Chromosoma, 95: 271-284.
52. Singh, M., R. Kumar, N. S. Nagpure, B. Kushwaha, I. Gond & W. S. Lakra. 2009. Chromosomal localization of 18S and 5S rDNA using FISH in the genus Tor (Pisces, Cyprinidae). Genetica, 137: 245-252.
53. Smith, M. A., N. E. Woodley, D. H. Janzen, W. Hallwachs & P. D. N. Hebert. 2005. DNA barcodes reveal cryptic host-specificity within the presumed polyphagus members of a genus of parasitoid flies (Diptera: Tachinidae). Proceedings of the National Academy of Sciences of the United Estates of America, 103: 3657-3662.
54. Sumner, A. T. 1972. A simple technique for demonstrating centromeric heterochromatin. Experimental Cell Research, 75: 304-306.
55. Sumner, A. T. 1990. Chromosome Banding, London, Academic Division of Unwin Hyman, 434p.
56. Suzuki, H., S. Sakurai & Y. Matsuda. 1996. Rat 5S rDNA spacer sequences and chromosomal assignment of the genes to the extreme terminal region of chromosome 19. Cytogenetics and Cell Genetics, 72: 1-4.
57. Tamura, K., J. Dudley, M. Nei & S. Kumar. 2007. MEGA 4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0. Molecular Biology Evolution, 24: 1596-1599.
58. Turner, B. J., N. Diffoot & E. M. Rasch. 1992. The callichthyid catfish Corydoras aeneus is an unresolved diploid-tetraploid sibling complex. Ichthyology Exploration of Freshwater, 3: 17-23.
59. Valdez-Moreno, M., N. V. Ivanova, M. Elías-Guitiérrez, S. Contreras-Balderas & P. D. N. Hebert. 2009. Probing diversity in freshwater fishes from Mexico and Guatemala with DNA barcodes. Journal of Fish Biology, 74: 377-402.
60. Vicari, M. R., M. C. Almeida, L. A. C. Bertollo, O. Moreira-Filho & R. F. Artoni. 2006. Cytogenetic analysis and chromosomal characteristics of the polymorphic 18S rDNA in the fish Prochilodus lineatus (Characiformes, Prochilodontidae). Genetics and Molecular Biology, 29: 621-625.
61. Vicari, M. R., R. F. Artoni, O. Moreira-Filho & L. A. C. Bertollo. 2008. Colocalization of repetitive DNAs and silencing of major rRNA genes. A case report of the fish Astyanax janeiroensis. Cytogenetic and Genome Research, 122: 67-72.
62. Ward, R. D., T. S. Zemlak, B. H. Innes, P. R. Last & P. D. N. Hebert. 2005. DNA barcoding Australia's fish species. Philosophical Transactions of the Royal Society Biological sciences, 360: 1847-1857.
63. Ward, R. D., B. H. Holmes, T. S. Zemlak & P. J. Smith. 2007. DNA barcoding discriminates spurdogs of the genus Squalus. Pp. 117-130. In: Last, P. R., W. T. White & J. J. Pogonoski (Eds). Descriptions of new dogfishies of the genus Squalus (Squaloidea: Squalidae). Australia, CSIRO Marine and Atmospheric Research, 130p.
64. Ward, R. D., B. H. Holmes & G. K. Yearsley. 2008. DNA barcoding reveals a likely second species of Asian sea bass (barramundi) (Lates calcarifer). Journal of Fish Biology, 72: 458-463.
65. Ward, R. D. 2009. DNA barcode divergence among species and genera of birds and fishes. Molecular Ecology Resources, 9: 1077-1085.
66. Wasko, A. P., C. Martins, J. M. Wright & P. M. Galetti. 2001. Molecular organization of 5S rDNA in fishes of the genus Brycon. Genome, 44:893-908.
67. Weiler, K. S. & B. T. Wakimoto. 1995. Heterochromatin and gene expression in Drosophila. Annual Review of Genetics, 29: 577-605.
68. Witt, J. D. S., D. L. Threloff & P. D. N. Hebert. 2006. DNA barcoding reveals extraordinary cryptic diversity in an amphipode genus: implications for desert spring conservation. Molecular Ecology, 15: 3073-3082.
69. Yassin, A., P. Capy, L. Madi-Ravazzi, D. Ogereau & J. R. David. 2008. DNA barcode discovers two cryptic species and two geographical radiations in the invasive drosophilid Zaprionus indianus. Molecular Ecology Resources, 8: 491-501.
70. Zurita, F., A. Sánchez, M. Burgos, R. Jiménez & R. Díaz de la Guardia. 1997. Interchromosomal, intercellular and interindividual variability of NORs studied with silver staining and in situ hybridization. Heredity, 78: 229-234.