메뉴 건너뛰기




Volumn 40, Issue W1, 2012, Pages

GalaxyWEB server for protein structure prediction and refinement

Author keywords

[No Author keywords available]

Indexed keywords

AB INITIO CALCULATION; ARTICLE; COMPUTER PROGRAM; INTERNET; MOLECULAR MODEL; PREDICTION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FUNCTION; PROTEIN STRUCTURE; RELIABILITY; TEMPLATE BASED MODELING; WEB SERVER;

EID: 84864461950     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gks493     Document Type: Article
Times cited : (644)

References (21)
  • 1
    • 44949145113 scopus 로고    scopus 로고
    • Progress and challenges in protein structure prediction
    • Zhang, Y. (2008) Progress and challenges in protein structure prediction. Curr. Opin. Struct. Biol., 18, 342-348.
    • (2008) Curr. Opin. Struct. Biol. , vol.18 , pp. 342-348
    • Zhang, Y.1
  • 4
    • 36749099341 scopus 로고    scopus 로고
    • Assessment of CASP7 predictions for template-based modeling targets
    • Kopp, J., Bordoli, L., Battey, J.N., Kiefer, F. and Schwede, T. (2007) Assessment of CASP7 predictions for template-based modeling targets. Proteins, 69(Suppl. 8), 38-56.
    • (2007) Proteins , vol.69 , Issue.SUPPL. 8 , pp. 38-56
    • Kopp, J.1    Bordoli, L.2    Battey, J.N.3    Kiefer, F.4    Schwede, T.5
  • 6
    • 80855132939 scopus 로고    scopus 로고
    • Assessment of template based protein structure predictions in CASP9
    • Mariani, V., Kiefer, F., Schmidt, T., Haas, J. and Schwede, T. (2011) Assessment of template based protein structure predictions in CASP9. Proteins, 79(Suppl. 10), 37-58.
    • (2011) Proteins , vol.79 , Issue.SUPPL. 10 , pp. 37-58
    • Mariani, V.1    Kiefer, F.2    Schmidt, T.3    Haas, J.4    Schwede, T.5
  • 7
    • 16344373015 scopus 로고    scopus 로고
    • Protein homology detection by HMM-HMM comparison
    • Soding, J. (2005) Protein homology detection by HMM-HMM comparison. Bioinformatics, 21, 951-960.
    • (2005) Bioinformatics , vol.21 , pp. 951-960
    • Soding, J.1
  • 8
    • 42449090264 scopus 로고    scopus 로고
    • Promals3d: A tool for multiple protein sequence and structure alignments
    • Pei, J., Kim, B.H. and Grishin, N.V. (2008) PROMALS3D: a tool for multiple protein sequence and structure alignments. Nucleic Acids Res., 36, 2295-2300.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 2295-2300
    • Pei, J.1    Kim, B.H.2    Grishin, N.V.3
  • 10
    • 0347717582 scopus 로고    scopus 로고
    • The second extracellular loop of the dopamine D2 receptor lines the binding-site crevice
    • Shi, L. and Javitch, J.A. (2004) The second extracellular loop of the dopamine D2 receptor lines the binding-site crevice. Proc. Natl Acad. Sci. USA, 101, 440-445.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 440-445
    • Shi, L.1    Javitch, J.A.2
  • 11
    • 0344441463 scopus 로고    scopus 로고
    • Closed conformation of the active site loop of rabbit muscle triosephosphate isomerase in the absence of substrate: Evidence of conformational heterogeneity
    • Aparicio, R., Ferreira, S.T. and Polikarpov, I. (2003) Closed conformation of the active site loop of rabbit muscle triosephosphate isomerase in the absence of substrate: evidence of conformational heterogeneity. J. Mol. Biol., 334, 1023-1041.
    • (2003) J. Mol. Biol. , vol.334 , pp. 1023-1041
    • Aparicio, R.1    Ferreira, S.T.2    Polikarpov, I.3
  • 12
    • 17644392830 scopus 로고    scopus 로고
    • Tm-align: A protein structure alignment algorithm based on the tm-score
    • Zhang, Y. and Skolnick, J. (2005) TM-align: a protein structure alignment algorithm based on the TM-score. Nucleic Acids Res., 33, 2302-2309.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 2302-2309
    • Zhang, Y.1    Skolnick, J.2
  • 13
    • 69849109596 scopus 로고    scopus 로고
    • All-atom chain-building by optimizing MODELLER energy function using conformational space annealing
    • Joo, K., Lee, J., Seo, J.H., Lee, K. and Kim, B.G. (2009) All-atom chain-building by optimizing MODELLER energy function using conformational space annealing. Proteins, 75, 1010-1023.
    • (2009) Proteins , vol.75 , pp. 1010-1023
    • Joo, K.1    Lee, J.2    Seo, J.H.3    Lee, K.4    Kim, B.G.5
  • 14
    • 79960078022 scopus 로고    scopus 로고
    • Incorporation of evolutionary information into rosetta comparative modeling
    • Thompson, J. and Baker, D. (2011) Incorporation of evolutionary information into Rosetta comparative modeling. Proteins, 79, 2380-2388.
    • (2011) Proteins , vol.79 , pp. 2380-2388
    • Thompson, J.1    Baker, D.2
  • 15
    • 0027136282 scopus 로고
    • Comparative protein modelling by satisfaction of spatial restraints
    • Sali, A. and Blundell, T.L. (1993) Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol., 234, 779-815.
    • (1993) J. Mol. Biol. , vol.234 , pp. 779-815
    • Sali, A.1    Blundell, T.L.2
  • 16
    • 80051556272 scopus 로고    scopus 로고
    • Refinement of protein termini in template-based modeling using conformational space annealing
    • Park, H., Ko, J., Joo, K., Lee, J. and Seok, C. (2011) Refinement of protein termini in template-based modeling using conformational space annealing. Proteins, 79, 2725-2734.
    • (2011) Proteins , vol.79 , pp. 2725-2734
    • Park, H.1    Ko, J.2    Joo, K.3    Lee, J.4    Seok, C.5
  • 17
    • 84863783282 scopus 로고    scopus 로고
    • Refinement of unreliable local regions in template-based protein models
    • April 10 (doi: 10.1002/prot.24086; epub ahead of print)
    • Park, H. and Seok, C. (2012) Refinement of unreliable local regions in template-based protein models. Proteins, April 10 (doi: 10.1002/prot.24086; epub ahead of print).
    • (2012) Proteins
    • Park, H.1    Seok, C.2
  • 19
    • 78349284741 scopus 로고    scopus 로고
    • Protein loop modeling by using fragment assembly and analytical loop closure
    • Lee, J., Lee, D., Park, H., Coutsias, E.A. and Seok, C. (2010) Protein loop modeling by using fragment assembly and analytical loop closure. Proteins, 78, 3428-3436.
    • (2010) Proteins , vol.78 , pp. 3428-3436
    • Lee, J.1    Lee, D.2    Park, H.3    Coutsias, E.A.4    Seok, C.5
  • 20
    • 0042622381 scopus 로고    scopus 로고
    • LGA: A method for finding 3D similarities in protein structures
    • Zemla, A. (2003) LGA: a method for finding 3D similarities in protein structures. Nucleic Acids Res., 31, 3370-3374.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3370-3374
    • Zemla, A.1
  • 21
    • 0032605828 scopus 로고    scopus 로고
    • Processing and analysis of CASP3 protein structure predictions
    • Zemla, A., Venclovas, C., Moult, J. and Fidelis, K. (1999) Processing and analysis of CASP3 protein structure predictions. Proteins, (Suppl. 3), 22-29.
    • (1999) Proteins , Issue.SUPPL. 3 , pp. 22-29
    • Zemla, A.1    Venclovas, C.2    Moult, J.3    Fidelis, K.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.