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Volumn 40, Issue W1, 2012, Pages

KoBaMIN: A knowledge-based minimization web server for protein structure refinement

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER PROGRAM; CRITICAL ASSESSMENT OF TECHNIQUES FOR PROTEIN STRUCTURE PREDICTION 7; CRITICAL ASSESSMENT OF TECHNIQUES FOR PROTEIN STRUCTURE PREDICTION 8; CRITICAL ASSESSMENT OF TECHNIQUES FOR PROTEIN STRUCTURE PREDICTION 9; INFORMATION PROCESSING; ONLINE SYSTEM; PREDICTION; PRIORITY JOURNAL; PROTEIN DATA BANK; PROTEIN STRUCTURE; STRUCTURE ANALYSIS; WEB BROWSER;

EID: 84864436301     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gks376     Document Type: Article
Times cited : (120)

References (17)
  • 1
    • 0015859467 scopus 로고
    • Principles that govern the folding of protein chains
    • Anfinsen, C. (1973) Principles that govern the folding of protein chains. Science, 181, 223-230.
    • (1973) Science , vol.181 , pp. 223-230
    • Anfinsen, C.1
  • 2
    • 67650497792 scopus 로고    scopus 로고
    • Nature of the protein universe
    • Levitt, M. (2009) Nature of the protein universe. Proc. Natl Acad. Sci. USA, 106, 11079.
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 11079
    • Levitt, M.1
  • 3
    • 44949145113 scopus 로고    scopus 로고
    • Progress and challenges in protein structure prediction
    • Zhang, Y. (2008) Progress and challenges in protein structure prediction. Curr. Opin. Struct. Biol., 18, 342-348.
    • (2008) Curr. Opin. Struct. Biol. , vol.18 , pp. 342-348
    • Zhang, Y.1
  • 4
    • 14644438345 scopus 로고    scopus 로고
    • Progress and challenges in high-resolution refinement of protein structure models
    • Misura, K. and Baker, D. (2005) Progress and challenges in high-resolution refinement of protein structure models. Proteins, 59, 15-29.
    • (2005) Proteins , vol.59 , pp. 15-29
    • Misura, K.1    Baker, D..2
  • 5
    • 0014675222 scopus 로고
    • Refinement of protein conformations using a macromolecular energy minimization procedure
    • Levitt, M. and Lifson, S. (1969) Refinement of protein conformations using a macromolecular energy minimization procedure. J. Mol. Biol., 46, 269-279.
    • (1969) J. Mol. Biol. , vol.46 , pp. 269-279
    • Levitt, M.1    Lifson, S.2
  • 6
    • 33847673583 scopus 로고    scopus 로고
    • Near-native structure refinement using in vacuo energy minimization
    • Summa, C. and Levitt, M. (2007) Near-native structure refinement using in vacuo energy minimization. Proc. Natl Acad. Sci. USA, 104, 3177.
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 3177
    • Summa, C.1    Levitt, M.2
  • 7
    • 58149479285 scopus 로고    scopus 로고
    • Solvent dramatically affects protein structure refinement
    • Chopra, G., Summa, C.M. and Levitt, M. (2008) Solvent dramatically affects protein structure refinement. Proc. Natl Acad. Sci. USA, 105, 20239-20244.
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 20239-20244
    • Chopra, G.1    Summa, C.M.2    Levitt, M.3
  • 8
    • 77955792980 scopus 로고    scopus 로고
    • Consistent refinement of submitted models at CASP using a knowledge-based potential
    • Chopra, G., Kalisman, N. and Levitt, M. (2010) Consistent refinement of submitted models at CASP using a knowledge-based potential. Proteins, 78, 2668-2678.
    • (2010) Proteins , vol.78 , pp. 2668-2678
    • Chopra, G.1    Kalisman, N.2    Levitt, M.3
  • 9
    • 0029633167 scopus 로고
    • Potential energy function and parameters for simulations of the molecular dynamics of proteins and nucleic acids in solution
    • Levitt, M., Hirshberg, M., Sharon, R. and Daggett, V. (1995) Potential energy function and parameters for simulations of the molecular dynamics of proteins and nucleic acids in solution. Comput. Phys. Commun., 91, 215-231.
    • (1995) Comput. Phys. Commun. , vol.91 , pp. 215-231
    • Levitt, M.1    Hirshberg, M.2    Sharon, R.3    Daggett, V.4
  • 14
    • 0344033635 scopus 로고    scopus 로고
    • PDB file parser and structure class implemented in Python
    • Hamelryck, T. and Manderick, B. (2003) PDB file parser and structure class implemented in Python. Bioinformatics, 19, 2308-2310.
    • (2003) Bioinformatics , vol.19 , pp. 2308-2310
    • Hamelryck, T.1    Manderick, B.2
  • 15
    • 33646887390 scopus 로고
    • On the limited memory BFGS method for large scale optimization
    • Dong, C. and Nocedal, J. (1989) On the limited memory BFGS method for large scale optimization. Math. Program., 45, 503.
    • (1989) Math. Program. , vol.45 , pp. 503
    • Dong, C.1    Nocedal, J.2
  • 16
    • 0042622381 scopus 로고    scopus 로고
    • LGA: A method for finding 3D similarities in protein structures
    • Zemla, A. (2003) LGA: a method for finding 3D similarities in protein structures. Nucleic Acids Res., 31, 3370-3374.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3370-3374
    • Zemla, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.