Structural and biochemical characterization of native and recombinant single insulin-like growth factor-binding domain protein (SIBD-1) from the Central American Hunting Spider Cupiennius salei (Ctenidae)

Proteins: Structure, Function and Bioinformatics

Volumn 80, Issue 9, 2012, Pages 2323-2329

  Trachsel, Christian ^a   Widmer, Christine ^a   Kämpfer, Urs ^a   Bühr, Claudia ^a   Baumann, Tommy ^a   Kuhn Nentwig, Lucia ^a   Schürch, Stefan ^a   Schaller, Johann ^a   Baumann, Ulrich ^b  

^a UNIVERSITY OF BERN   (Switzerland)

^b UNIVERSITY OF COLOGNE   (Germany)

Author keywords

Cupiennius salei; Glycosylation; Insulin like growth factor binding protein; Single insulin binding domain

Indexed keywords

SINGLE INSULIN LIKE GROWTH FACTOR BINDING DOMAIN PROTEIN; SOMATOMEDIN BINDING PROTEIN; UNCLASSIFIED DRUG;

ANIMAL CELL; ARTICLE; CRYSTAL STRUCTURE; CUPIENNIUS SALEI; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN GLYCOSYLATION; PROTEIN STRUCTURE; SPIDER; WILD TYPE;

AMINO ACID SEQUENCE; ANIMALS; ARTHROPOD PROTEINS; CENTRAL AMERICA; INSULIN-LIKE GROWTH FACTOR BINDING PROTEINS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN CONFORMATION; RECOMBINANT PROTEINS; SPIDERS;

ARANEAE; CTENIDAE; CUPIENNIUS SALEI;

EID: 84864414514     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.24119     Document Type: Article

References (30)

1. Iwanaga S, Lee BL. Recent advances in the innate immunity of invertebrate animals. J Biochem Mol Biol 2005; 38: 128-150.
2. Sorensen OE, Borregaard N, Cole AM. Antimicrobial peptides in innate immune responses. Contrib Microbiol 2008; 15: 61-77.
3. Kuhn-Nentwig L, Largiader CR, Streitberger K, Chandru S, Baumann T, Kämpfer U, Schaller J, Schürch S, Nentwig W. Purification, cDNA structure and biological significance of a single insulin-like growth factor-binding domain protein (SIBD-1) identified in the hemocytes of the spider Cupiennius salei. Insect Biochem Mol Biol 2011; 41: 891-901.
4. Gai YC, Wang LL, Song LS, Zhao JM, Qiu LM, Xing KZ. A putative endocrine factor SIBD (single insulin binding domain protein) involved in immune response of Chinese mitten crab Eriocheir sinensis. Fish Shellfish Immunol 2010; 28: 10-17.
5. Castellanos M, Jimenez-Vega F, Vargas-Albores F. Single IB domain (SIBD) protein from Litopenaeus vannamei, a novel member for the IGFBP family. Comp Biochem Physiol D 2008; 3: 270-274.
6. Weiss IM, Gohring W, Fritz M, Mann K. Perlustrin, a Haliotis laevigata (abalone) nacre protein, is homologous to the insulin-like growth factor binding protein N-terminal module of vertebrates. Biochem Biophys Res Commun 2001; 285: 244-249.
7. Baxter RC, Binoux M, Clemmons DR, Conover C, Drop SL, Holly JM, Mohan S, Oh Y, Rosenfeld RG. Recommendations for nomenclature of the insulin-like growth factor binding protein (IGFBP) superfamily. Growth Horm IGF Res 1998; 8: 273-274.
8. Hwa V, Oh Y, Rosenfeld RG. The insulin-like growth factor-binding protein (IGFBP) superfamily. Endocrinol Rev 1999; 20: 761-787.
9. Firth SM, Baxter RC. Cellular actions of the insulin-like growth factor binding proteins. Endocrinol Rev 2002; 23: 824-854.
10. Sitar T, Popowicz GM, Siwanowicz I, Huber R, Holak TA. Structural basis for the inhibition of insulin-like growth factors by insulin-like growth factor-binding proteins. Proc Natl Acad Sci USA 2006; 103: 13028-13033.
11. Siwanowicz I, Popowicz GM, Wisniewska M, Huber R, Kuenkele KP, Lang K, Engh RA, Holak TA. Structural basis for the regulation of insulin-like growth factors by IGF binding proteins. Structure 2005; 13: 155-167.
12. Zeslawski W, Beisel HG, Kamionka M, Kalus W, Engh RA, Huber R, Lang K, Holak TA. The interaction of insulin-like growth factor-I with the N-terminal domain of IGFBP-5. EMBO J 2001; 20: 3638-3644.
13. Kalus W, Zweckstetter M, Renner C, Sanchez Y, Georgescu J, Grol M, Demuth D, Schumacher R, Dony C, Lang K, Holak TA. Structure of the IGF-binding domain of the insulin-like growth factor-binding protein-5 (IGFBP-5): implications for IGF and IGF-I receptor interactions. EMBO J 1998; 17: 6558-6572.
14. Chandrashekaran IR, Yao S, Wang CC, Bansal PS, Alewood PF, Forbes BE, Wallace JC, Bach LA, Norton RS. The N-terminal subdomain of insulin-like growth factor (IGF) binding protein 6. Structure and interaction with IGFs. Biochemistry (Mosc) 2007; 46: 3065-3074.
15. Schaller J, Kämpfer U, Schürch S, Kuhn-Nentwig L, Haeberli S, Nentwig W. CSTX-9, a toxic peptide from the spider Cupiennius salei: amino acid sequence, disulphide bridge pattern and comparison with other spider toxins containing the cystine knot structure. Cell Mol Life Sci 2001; 58: 1538-1545.
16. Trachsel C, Kämpfer U, Bechtold R, Schaller J, Schürch S. Elucidation of the disulfide bridge pattern of the recombinant human growth and differentiation factor 5 dimer and the interchain Cys/Ala mutant monomer. Anal Biochem 2009; 390: 103-108.
17. Gupta R, Jentoft N. Analysis of natural and modified amino acids and hexosamines by reversed-phase high-performance liquid chromatography. J Chromatogr 1989; 474: 411-417.
18. Segu ZM, Mechref Y. Characterizing protein glycosylation sites through higher-energy C-trap dissociation. Rapid Commun Mass Spectrom 2010; 24: 1217-1225.
19. Kabsch W. Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. J Appl Crystallogr 1993; 26: 795-800.
20. Sheldrick GM. A short history of SHELX. Acta Crystallogr A 2008; 64(Pt 1): 112-122.
21. Adams PD, Afonine PV, Bunkoczi G, Chen VB, Davis IW, Echols N, Headd JJ, Hung LW, Kapral GJ, Grosse-Kunstleve RW, McCoy AJ, Moriarty NW, Oeffner R, Read RJ, Richardson DC, Richardson JS, Terwilliger TC, Zwart PH. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr 2010; 66: 213-221.
22. Emsley P, Cowtan K. Coot: model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr 2004; 60: 2126-2132.
23. McCoy AJ, Grosse-Kunstleve RW, Adams PD, Winn MD, Storoni LC, Read RJ. Phaser crystallographic software. J Appl Crystallogr 2007; 40: 658-674.
24. Richard D. Cummings, Jeffrey D. Esko, Hudson H. Freeze, Pamela Stanley, Carolyn R. Bertozzi, Gerald W. Hart, Marilynn E. Etzler. Essentials of glycobiology, 2nd ed. Cold Spring Harbor Laboratories Press; 2009.
25. Marinaro JA, Neumann GM, Russo VC, Leeding KS, Bach LA. O-glycosylation of insulin-like growth factor (IGF) binding protein-6 maintains high IGF-II binding affinity by decreasing binding to glycosaminoglycans and susceptibility to proteolysis. Eur J Biochem 2000; 267: 5378-5386.
26. Marinaro JA, Casley DJ, Bach LA. O-glycosylation delays the clearance of human IGF-binding protein-6 from the circulation. Eur J Endocrinol 2000; 142: 512-516.
27. Krissinel E, Henrick K. Inference of macromolecular assemblies from crystalline state. J Mol Biol 2007; 372: 774-797.
28. The CCP4 suite: programs for protein crystallography. Acta Crystallogr D Biol Crystallogr 1994; 50: 760-763.
29. Gouet P, Courcelle E, Stuart DI, Metoz F. ESPript: analysis of multiple sequence alignments in PostScript. Bioinformatics 1999; 15: 305-308.
30. Chenna R, Sugawara H, Koike T, Lopez R, Gibson TJ, Higgins DG, Thompson JD. Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res 2003; 31: 3497-3500.