메뉴 건너뛰기




Volumn 4, Issue 1, 2011, Pages 51-64

A cross-population extended haplotype-based homozygosity score test to detect positive selection in genome-wide scans

Author keywords

Extended homozygosity; Linkage disequilibrium; Ositive selection

Indexed keywords


EID: 84864390162     PISSN: 19387989     EISSN: 19387997     Source Type: Journal    
DOI: 10.4310/sii.2011.v4.n1.a6     Document Type: Article
Times cited : (9)

References (22)
  • 1
    • 65149103048 scopus 로고    scopus 로고
    • Constructing genomic maps of positive selection in humans: where do we go from here?
    • Akey, J. M. (2009). Constructing genomic maps of positive selection in humans: where do we go from here? Genome Research 19 711-722.
    • (2009) Genome Research , vol.19 , pp. 711-722
    • Akey, J.M.1
  • 2
    • 0036911353 scopus 로고    scopus 로고
    • Interrogating a high-density SNP map for signature of natural selection
    • Akey, J. M., Zhang, G., Zhang, K., Jin, L. & Shriver, M. D. (2002). Interrogating a high-density SNP map for signature of natural selection. Genome Research 12 1805-1814.
    • (2002) Genome Research , vol.12 , pp. 1805-1814
    • Akey, J.M.1    Zhang, G.2    Zhang, K.3    Jin, L.4    Shriver, M.D.5
  • 3
    • 8844227502 scopus 로고    scopus 로고
    • Population history and natural selection shape patterns of genetic variation in 132 genes
    • Akey, J. M., Eberle, M. A., Rieder, M. J., et al. (2004). Population history and natural selection shape patterns of genetic variation in 132 genes. PLoS Biol. 2, e286.
    • (2004) PLoS Biol , vol.2
    • Akey, J.M.1    Eberle, M.A.2    Rieder, M.J.3
  • 4
    • 2442677652 scopus 로고    scopus 로고
    • Genetic signatures of strong recent positive selection at the lactase gene
    • Bersaglieri, T., Sabeti, P. C., Patterson, N. et al. (2004). Genetic signatures of strong recent positive selection at the lactase gene. Am. J. Hum. Genet. 74 1111-1120.
    • (2004) Am. J. Hum. Genet. , vol.74 , pp. 1111-1120
    • Bersaglieri, T.1    Sabeti, P.C.2    Patterson, N.3
  • 6
    • 0033911640 scopus 로고    scopus 로고
    • Hitchhiking under positive Darwinian selection
    • Fay, J. C. and Wu, C. I. (2000). Hitchhiking under positive Darwinian selection. Genetics 155 1405-1413.
    • (2000) Genetics , vol.155 , pp. 1405-1413
    • Fay, J.C.1    Wu, C.I.2
  • 7
    • 0027453041 scopus 로고
    • Statistical tests of neutrality of mutations
    • Fu, Y. X. and Li, W. H. (1993). Statistical tests of neutrality of mutations. Genetics 133 693-709.
    • (1993) Genetics , vol.133 , pp. 693-709
    • Fu, Y.X.1    Li, W.H.2
  • 8
    • 29244474907 scopus 로고    scopus 로고
    • Screening for recently selected alleles by analysis of human haplotype similarity
    • Hanchard, N. A. et al. (2006). Screening for recently selected alleles by analysis of human haplotype similarity. Am. J. Hum. Genet. 78 153-159.
    • (2006) Am. J. Hum. Genet. , vol.78 , pp. 153-159
    • Hanchard, N.A.1
  • 9
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under aWright-Fisher neutral model
    • Hudson, R. R. (2002). Generating samples under aWright-Fisher neutral model. Bioinformatics 18 337-338.
    • (2002) Bioinformatics , vol.18 , pp. 337-338
    • Hudson, R.R.1
  • 10
    • 0028215929 scopus 로고
    • Evidence for positive selection in the superoxide dismutase (Sod) region of Drosophila melanogaster
    • Hudson, R. R., Bailey, K., Skarecky, D., Kwiatowski, J. & Ayala, F. J. (1994). Evidence for positive selection in the superoxide dismutase (Sod) region of Drosophila melanogaster. Genetics 136 1329-1340.
    • (1994) Genetics , vol.136 , pp. 1329-1340
    • Hudson, R.R.1    Bailey, K.2    Skarecky, D.3    Kwiatowski, J.4    Ayala, F.J.5
  • 11
    • 0012835385 scopus 로고
    • A test of neutral molecular evolution based on nucleotide data
    • Hudson, R. R., Kreitman, K. and Aguadé, M. (1987). A test of neutral molecular evolution based on nucleotide data. Genetics 120 831-840.
    • (1987) Genetics , vol.120 , pp. 831-840
    • Hudson, R.R.1    Kreitman, K.2    Aguadé, M.3
  • 12
    • 35348983887 scopus 로고    scopus 로고
    • A second generation human haplotype map of over 3.1 million SNPs
    • The International HapMap Consortium
    • The International HapMap Consortium (2007). A second generation human haplotype map of over 3.1 million SNPs. Nature 449 851-861.
    • (2007) Nature , vol.449 , pp. 851-861
  • 13
    • 29144485743 scopus 로고    scopus 로고
    • SLC24A5, a putative cation exchanger, affects pigmentation in Zebrafish and humans
    • Lamason, R. L. et al. (2005). SLC24A5, a putative cation exchanger, affects pigmentation in Zebrafish and humans. Science 310 1782-1786.
    • (2005) Science , vol.310 , pp. 1782-1786
    • Lamason, R.L.1
  • 14
    • 29444452921 scopus 로고    scopus 로고
    • Molecular signatures of natural selection
    • Nielsen, R. (2005). Molecular signatures of natural selection. Annu. Rev. Genet. 39 197-218.
    • (2005) Annu. Rev. Genet. , vol.39 , pp. 197-218
    • Nielsen, R.1
  • 15
    • 0344375110 scopus 로고    scopus 로고
    • The causal element for the lactase persistence/non-persistence polymorphism is located in a 1 Mb region of linkage disequilibrium in Europeans
    • Poulter, M. (2003). The causal element for the lactase persistence/non-persistence polymorphism is located in a 1 Mb region of linkage disequilibrium in Europeans. Ann. Hum. Genet. 67 298-311.
    • (2003) Ann. Hum. Genet. , vol.67 , pp. 298-311
    • Poulter, M.1
  • 16
    • 0037167852 scopus 로고    scopus 로고
    • Detecting recent positive selection in the human genome from haplotype structure
    • Sabeti, P. C. et al. (2002). Detecting recent positive selection in the human genome from haplotype structure. Nature 419 832-837.
    • (2002) Nature , vol.419 , pp. 832-837
    • Sabeti, P.C.1
  • 17
    • 35349012592 scopus 로고    scopus 로고
    • Genome-wide detection and characterization of positive selection in human populations
    • Sabeti, P. C. et al. (2007). Genome-wide detection and characterization of positive selection in human populations. Nature 449 913-918.
    • (2007) Nature , vol.449 , pp. 913-918
    • Sabeti, P.C.1
  • 18
    • 4644333804 scopus 로고    scopus 로고
    • SelSim: a program to simulate population genetic data with natural selection and recombination
    • Spencer, C. C. A. and Coop, G. (2004). SelSim: a program to simulate population genetic data with natural selection and recombination. Bioinformatics 20 3673-3675.
    • (2004) Bioinformatics , vol.20 , pp. 3673-3675
    • Spencer, C.C.A.1    Coop, G.2
  • 19
    • 0024313579 scopus 로고
    • Statistical methods for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima, F. (1989). Statistical methods for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 21
    • 0021566877 scopus 로고
    • Estimating Fstatistics for the analysis of population structure
    • Weir, B. S. and Cockerham, C. C. (1984). Estimating Fstatistics for the analysis of population structure. Evolution 38 1358-1370.
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • Weir, B.S.1    Cockerham, C.C.2
  • 22
    • 77957108885 scopus 로고    scopus 로고
    • A powerful score test to detect positive selection in genome-wide scans
    • The C++ codes are available freely from
    • Zhong, M., Lange, K., Papp, J. C., and Fan, R. Z. (2010). A powerful score test to detect positive selection in genome-wide scans. European Journal of Human Genetics, 18 1148-1359. The C++ codes are available freely from http://www.stat.tamu.edu/~rfan/software.html/.
    • (2010) European Journal of Human Genetics , vol.18 , pp. 1148-1359
    • Zhong, M.1    Lange, K.2    Papp, J.C.3    Fan, R.Z.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.