Single nucleotide polymorphisms in i-type lysozyme gene and their correlation with vibrio-resistance and growth of clam Meretrix meretrix based on the selected resistance stocks

Fish and Shellfish Immunology

Volumn 33, Issue 3, 2012, Pages 559-568

  Yue, Xin ^a   Wang, Hongxia ^a   Huang, Xiaohong ^a   Wang, Chao ^a   Chai, Xueliang ^b   Wang, Chunde ^c   Liu, Baozhong ^a  

^a INSTITUTE OF OCEANOLOGY   (China)

^b Zhejiang Mariculture Research Institute   (China)

^c QINGDAO AGRICULTURAL UNIVERSITY   (China)

Author keywords

Lysozyme; Meretrix meretrix; SNPs; Vibrio resistance

Indexed keywords

BACTERIA (MICROORGANISMS); BIVALVIA; MERETRIX MERETRIX; VIBRIO; VIBRIO HARVEYI; VIBRIO PARAHAEMOLYTICUS;

EID: 84864387567     PISSN: 10504648     EISSN: 10959947     Source Type: Journal    
DOI: 10.1016/j.fsi.2012.06.007     Document Type: Article

References (79)

1. Tang B.J., Liu B.Z., Wang G.D., Zhang T., Xiang J.H. Effects of various algal diets and starvation on larval growth and survival of Meretrix meretrix. Aquaculture 2006, 254:526-533.
2. Cheng W., Hsiao I., Hsu C., Chen J.C. Change in water temperature on the immune response of Taiwan abalone Haliotis diversicolor supertexta and its susceptibility to Vibrio parahaemolyticus. Fish Shellfish Immunol 2004, 7:235-243.
3. Paillard C., Roux F.L., Borrego J.J. Bacterial disease in marine bivalves, a review of recent studies: trends and evolution. Aquat Living Resour 2004, 17:477-498.
4. Wang G.H., Shen Y.Y., Sha P.R., Cao X.Z. Study about the vibrio-disease of M. meretrix. Microbiology (Chinese) 1992, 19:222-225.
5. Yue X., Liu B.Z., Xiang J.H., Jia J.T. Identification and characterization of the pathogenic effect of a Vibrio parahaemolyticus-related bacterium isolated from clam Meretrix meretrix with mass mortality. J Invertebr Pathol 2010, 103:109-115.
6. Yue X., Liu B.Z., Sun L. Isolation and characterization of a virulent Vibrio sp. bacterium from clams (Meretrix meretrix) with mass mortality. J Invertebr Pathol 2011, 106:242-249.
7. Lo Presti R., Lisa C., Di Stasio L. Molecular genetics in aquaculture. Ital J Anim Sci 2009, 8:299-313.
8. Collard B.C.Y., Jahufer M.Z.Z., Brouwer J.B., Pang E.C.K. An introduction to markers, quantitative trait loci (QTL) mapping and marker-assisted selection for crop improvement: the basic concepts. Euphytica 2005, 142:169-196.
9. Dekkers J.C.M., Hospital F. The use of molecular genetics in the improvement of agricultural populations. Nat Rev Genet 2002, 3:22-32.
10. Ozaki A., Sakamoto T., Khoo S., Nakamura K., Coim-bra M., Akutsu T., et al. Quantitative trait loci (QTLs) associated with resistance/susceptibility to infectious pancreatic necrosis virus (IPNV) in rainbow trout (Oncorhynchus mykiss). Mol Genet Genomics 2001, 265:23-31.
11. Fuji K., Hasegawa O., Honda K., Kumasaka K., Sakamoto T., Okamoto N. Marker assisted breeding of a lymphocystis disease-resistant Japanese flounder (Paralichthys olivaceus). Aquaculture 2007, 272:291-295.
12. Ribaut J.M., Hoisington D. Marker-assisted selection: new tools and strategies. Trends Plant Sci 1998, 3:236-239.
13. Liu Z.J., Cordes J.F. DNA marker technologies and their applications in aquaculture genetics. Aquaculture 2004, 238:1-37.
14. Vignal A., Milan D., Sancristobal M., Eggen A. A review on SNP and other types of molecular markers and their use in animal genetics. Genet Sel Evol 2002, 34:275-305.
15. Sprowles A.E., Tephens M.R.S., Clipperton N.W., May B.P. Fishing for SNPs: a targeted locus approach for single nucleotide polymorphism discovery in rainbow trout. T Am Fish Soc 2006, 135:1698-1721.
16. Li L., Zhao J., Wang L., Qiu L., Zhang H., Dong C., et al. The polymorphism of lysozyme gene in Zhikong scallop (Chlamys farreri) and its association with susceptibility/resistance to Listonella anguillarum. Fish Shellfish Immunol 2009, 27:136-142.
17. Bao Y.B., Li L., Zhang G.F. Polymorphism of the superoxide dismutase gene family in the bay scallop (Argopecten irradians) and its association with resistance/susceptibility to Vibrio anguillarum. Dev Comp Immunol 2010, 34:553-561.
18. Chistiakov D.A., Kabanov F.V., Troepolskaya O.D., Tischenko M.M. A variant of the interleukin-1β gene in European sea bass, Dicentrarchus labrax L., is associated with increased resistance against Vibrio anguillarum. J Fish Dis 2010, 33:759-767.
19. Xu T., Chen S., Zhang Y. MHC class IIα gene polymorphism and its association with resistance/susceptibility to Vibrio anguillarum in Japanese flounder (Paralichthys olivaceus). Dev Comp Immunol 2010, 34:1042-1050.
20. Kongchum P., Sandel E., Lutzk S., Hallerman E.M., Hulata G., David L., et al. Association between IL-10a single nucleotide polymorphisms and resistance to cyprinid herpesvirus-3 infection in common carp (Cyprinus carpio). Aquaculture 2011, 315:417-421.
21. Byrne P.F., McMullen M.D. Defining genes for agricultural traits: QTL analysis and the candidate gene approach. Probe 1996, 7:24-27.
22. Rothschild M.F., Soller M. Candidate gene analysis to detect genes controlling traits of economic importance in domestic livestock. Probe 1997, 8:13-20.
23. Pflieger S., Lefebvre V., Causse M. The candidate gene approach in plant genetics: a review. Mol Breeding 2001, 7:275-291.
24. Hersh C.P., DeMeo D.L., Lange C., Litonjua A.A., Reilly J.J., Kwiatkowski D., et al. Attempted replication of reported chronic obstructive pulmonary disease candidate gene associations. Am J Respir Cell Mol Biol 2005, 33:71-78.
25. Lamb C.J., Lawton M.A., Dron M., Dixon R.A. Signals and transduction mechanisms for activation of plant defense against microbial attack. Cell 1989, 56:215-224.
26. Hammond Kosack K.E., Jones J.D.G. Plant disease resistance genes. Annu Rev Plant Physiol Plant Mol Biol 1997, 48:575-607.
27. Gueguen Y., Cadoret J., Flament D., Barreau-Roumiguiere C., Girardot A., Garnier J., et al. Immune gene discovery by expressed sequence tags generated from hemocytes of the bacteria-challenged oyster, Crassostrea gigas. Gene 2003, 303:139-145.
28. Magnadottir B. Innate immunity of fish (overview). Fish Shellfish Immunol 2006, 20:137-151.
29. Callewaert L., Michiels C.W. Lysozymes in the animal kingdom. J Biosci 2010, 35:127-160.
30. Grinde B., Lie O., Poppe T., Sal te R. Species and individual variation in lysozyme activity in fish of interest in aquaculture. Aquaculture 1988, 68:299-304.
31. Roed K.H., Larsen H.J., Linder D., Refstie T. The genetic influence on natural immunity in rainbow trout. Anim Genet 1989, 20(Suppl. 1):54.
32. Balfry S.K., Maule A.G., Iwama G.K. Coho salmon Oncorhynchus kisutch strain differences in disease resistance and non-specific immunity, following immersion challenges with Vibrio anguillarum. Dis Aquat Org 2001, 47:39-48.
33. Fevolden S.E., Refstie T., Roed K.H. Selection for high and low cortisol stress response in Atlantic salmon (Salmo salar) and rainbow trout (Oncorhynchus mykiss). Aquaculture 1991, 95:53-65.
34. Fevolden S.E., Refstie T., Roed K.H. Disease resistance in rainbow (Oncorhynchus mykiss) selected for stress response. Aquaculture 1992, 104:19-29.
35. Fevolden S.E., Roed K.H., Fjalestad K.T. Selection response of cortisol and lysozyme in rainbow trout and correlation to growth. Aquaculture 2002, 205:61-75.
36. Fevolden S.E., Roed K.H. Cortisol and immune characteristics in rainbow trout (Oncorhynchus mykiss) selected for high and low tolerance to stress. J Fish Biol 1993, 43:919-930.
37. Johnson M.R., Bryden C.A., Heath D.D. Utility of genetically based health indicators for selection purposes in captive-reared chinook salmon, Oncorhynchus tshawytscha, Walbaum. Aquac Res 2003, 34:1029-1036.
38. Roed K.H., Fevolden S.E., Fjalestad K.T. Disease resistance and immune characteristics in rainbow trout (Oncorhynchus mykiss) selected for lysozyme activity. Aquaculture 2003, 209:91-101.
39. Fletcher G.L., Hobbs R.S., Evans R.P., Shears M.A., Hahn A.L., Hew C.L. Lysozyme transgenic Atlantic salmon (Salmo salar L.). Aquac Res 2011, 42:427-440.
40. Hermes Lima M., Storey K.B. Antioxidant defenses and metabolic depression in a pulmonate land snail. Am J Physiol Regul Integr Comp Physiol 1995, 268:1386-1393.
41. Nilsen I.W., Overbo K., Sandsdalen E., Sandaker E., Sletten K., Myrnes B. Protein purifcation and gene isolation of chlamysin, a cold-active lysozyme-like enzyme with antibacterial activity. FEBS Letter 1999, 464:153-158.
42. Xue Q.G., Schey K.L., Volety A.K., Chu F.L., La Peyre J.F. Purification and characterization of lysozyme from plasma of the eastern oyster (Crassostrea virginica). Comp Biochem Physiol B Biochem Mol Biol 2004, 139:11-25.
43. Hong X.T., Xiang L.X., Shao J.Z. The immuno-stimulating effect of bacterial genomic DNA on the innate immune responses of bivalve mussel, Hyriopsis cumingii Lea. Fish Shellfish Immunol 2006, 21:357-364.
44. Li H., Parisi M., Toubiana M., Cammarata M., Roch P. Lysozyme gene expression and hemocyte behaviour in the Mediterranean mussel, Mytilus galloprovincialis, after injection of various bacteria or temperature stresses. Fish Shellfish Immunol 2008, 25:143-152.
45. Cong L., Yang X., Wang X., Tada M., Lu M., Liu H., et al. Characterization of an i-type lysozyme gene from the sea cucumber Stichopus japonicus, and enzymatic and nonenzymatic antimicrobial activities of its recombinant protein. J Biosci Bioeng 2009, 107:583-588.
46. Zhao J., Qiu L., Ning X., Chen A., Wu H., Li C. Cloning and characterization of an invertebrate type lysozyme from Venerupis philippinarum. Comp Biochem Physiol B Biochem Mol Biol 2010, 156:56-60.
47. Yue X., Liu B., Xue Q. An i-type lysozyme from the Asiatic hard clam Meretrix meretrix potentially functioning in host immunity. Fish Shellfish Immunol 2011, 30:550-558.
48. Zobel C.E., Felthons C.B. Bacteria as food for certain marine invertebrates. J Mar Res 1938, 1:312-327.
49. McHenery J.G., Birkbeck T.H. Uptake and processing of cultured microorganisms by bivalves. J Exp Mar Biol Ecol 1985, 90:145-163.
50. Itoh N., Xue Q.G., Li Y., Cooper R.K., La-Peyre J.F. cDNA cloning and tissue expression of plasma lysozyme in the eastern oyster, Crassostrea virginica. Fish Shellfish Immunol 2007, 23:957-968.
51. Xue Q.G., Itoh N., Schey K.L. A new lysozyme from the eastern oyster (Crassostrea virginica) indicates adaptive evolution of i-type lysozymes. Cell Mol Life Sci 2007, 64:82-95.
52. Hooper C., Day R., Slocombe R., Handlinger J., Benkendorff K. Stress and immune responses in abalone: limitations in current knowledge and investigative methods based on other models. Fish Shellfish Immunol 2007, 22:363-379.
53. Liu B.Z., Dong B., Tang B.J., Zhang T., Xiang J.H. Effect of stocking density on growth, settlement and survival of clam larvae, Meretrix meretrix. Aquaculture 2006, 258:344-349.
54. Wang C., Huan P., Yue X., Yan M.C., Liu B.Z. Molecular characterization of a glutathione peroxidase gene and its expression in the selected Vibrio-resistant population of the clam Meretrix meretrix. Fish Shellfish Immunol 2011, 30:1294-1302.
55. Yue X., Liu B.Z., Sun L., Tang B.J. Cloning and characterization of a hsp70 gene from Asiatic hard clam Meretrix meretrix which is involved in the immune response against bacterial infection. Fish Shellfish Immunol 2011, 30:791-799.
56. Raymond M., Rousset F. GENEPOP, version 1.2: a population genetics software for exact tests and ecumenicism. J Hered 1995, 86:248-249.
57. Kalinowski S.T., Taper M.L., Marshall T.C. Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Mol Ecol 2007, 16:1099-1106.
58. Ihaka R., Gentleman R. R: a language for data analysis and graphics. J Comput Graph Stat 1996, 5:299-314.
59. Beardmore J.A., McConnell S.J. Genetics and disease resistance in aquaculture. J Appl Ichthyol 1998, 14:167-171.
60. Gjedrem T., Sake R., Gjoen H.M. Genetic variability of Atlantic salmon to furunculsis. Aquaculture 1991, 97:1-6.
61. Argue B.J., Arce S.M., Lotz J.M., Moss S.M. Selective breeding of Pacific white shrimp (Litopenaeus vannamei) for growth and resistance to Taura syndrome virus. Aquaculture 2002, 204:447-460.
62. Ehlinger N.F. Selective breeding of trout for resistance to furunculosis. New York Fish and Game Journal 1977, 24:25-36.
63. Kirpichnikov V.S., Ilyason Ju I., Shart L.A., Vihkman A.A., Ganchenko M.U., Ostachevsky A.L., et al. Selection of Krashoder common carp (Cyprinus carpio L) for resistance to dropsy: principal results and prospects. Aquaculture 1993, 111:7-20.
64. Okamoto N., Tayaman T., Kawanobe M., Fujiki N., Yasuda Y., Sano T. Resistance of a rainbow trout strain to infectious pancreatic necrosis. Aquaculture 1993, 117:71-76.
65. Nell A.J., Hand R.E. Evaluation of the progeny of second-generation Sydney rock oyster Saccostrea glomerata (Gold, 1850) breeding lines for resistance to QX disease Marteilia sydneyi. Aquaculture 2003, 228:27-35.
66. Haskin H.H., Ford S.E. Development of resistance to Minchinia nelsoni (MSX) mortality in laboratory-reared and native oyster stocks in Delaware Bay. Mar Fish Rev 1979, 41:54-63.
67. Ford S.E., Haskin H.H. Infection and mortality patterns in strains of oysters Crassostrea virginica selected for resistance to the parasite Haplosporidium nelsoni (MSX). J Parasit 1987, 73:368-376.
68. Allen S.K. Commercial applications of bivalve genetics: not a solo effort. World Aquac 1998, 29:38-43.
69. Naciri Graven Y., Martin A.G., Baud J.P., Renault T., Gerard A. Selecting the flat oyster Ostrea edulis (L.) for survival when infected with the parasite Bonamia ostreae. J Exp Mar Biol Ecol 1998, 224:91-107.
70. Ragone Calvo L.M., Calvo G.W., Burreson E.M. Dual disease resistance in a selectively bred eastern oyster, Crassostrea virginica, strain tested in Chesapeake Bay. Aquaculture 2003, 220:69-87.
71. Guo X., Ford S.E., DeBrosse G., Smolowitz R., Sunila I. Breeding and evaluation of eastern oyster strains selected for MSX, Dermo and JOD resistance. J Shellfish Res 2003, 22:333-334.
72. Beaz Hidalgo R., Balboa S., Romalde J.L., Figueras M.J. Diversity and pathogenecity of Vibrio species in cultured bivalve mollusks. Environ Microbiol Rep 2010, 2:34-43.
73. Hoh J.A., Wille A., Ott J. Trimming, weighting, and grouping SNPs in human case-control association studies. Genome Res 2001, 11:2115-2119.
74. Daly M.J., Rioux J.D., Schaffner S.F., Hudson T.J., Lander E.S. High-resolution haplotype structure in the human genome. Nat Genet 2001, 29:229-232.
75. Xu J., Turner A., Little J., Bleecker E.R., Meyers D.A. Positive results in association studies are associated with departure from Hardy-Weinberg equilibrium: hint for genotyping error?. Hum Genet 2002, 111:573-574.
76. Schaid D.J., Jacobsen S.J. Biased tests of association: comparisons of allele frequencies when departing from Hardy-Weinberg proportions. Am J Epidemiol 1999, 149:706-711.
77. McHenery J.G., Birkbeck T.H. Lysozyme of the mussel, Mytilus edulis (L.). Mar Biol Lett 1979, 1:111-119.
78. Fjalestad K.T., Gjedrem T., Gjerde B. Genetic improvement of disease resistance in fish: an overview. Aquaculture 1993, 111:65-74.
79. Thanh N.M., Barnes A.C., Mather P.B., Li Y., Lyons R.E. Single nucleotide polymorphisms in the actin and crustacean hyperglycemic hormone genes and their correlation with individual growth performance in giant freshwater prawn Macrobrachium rosenbergii. Aquaculture 2010, 301:7-15.