Genome-wide SNP discovery in walnut with an AGSNP pipeline updated for SNP discovery in allogamous organisms

BMC Genomics

Volumn 13, Issue 1, 2012, Pages

  You, Frank M ^a,b   Deal, Karin R ^a   Wang, Jirui ^a   Britton, Monica T ^a   Fass, Joseph N ^a   Lin, Dawei ^a   Dandekar, Abhaya M ^a   Leslie, Charles A ^a   Aradhya, Mallikarjuna ^c   Luo, Ming Cheng ^a   Dvorak, Jan ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b Cereal Research Centre   (Canada)

^c AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

AGSNP; BAC; BAC end sequence; Genome sequence; Infinium; Physical map; Single nucleotide polymorphism; SOLiD; Walnut

Indexed keywords

ARTICLE; BACTERIAL ARTIFICIAL CHROMOSOME; CONTIG MAPPING; GENE CONSTRUCT; GENE FREQUENCY; GENE IDENTIFICATION; GENE SEQUENCE; GENETIC VARIABILITY; GENOME ANALYSIS; GENOTYPE; HETEROZYGOSITY; HOMOZYGOSITY; NONHUMAN; OUTCROSSING; PLANT GENOME; PLANT GROWTH; POPULATION GENETIC STRUCTURE; SELFING; SINGLE NUCLEOTIDE POLYMORPHISM; VEGETATIVE PROPAGATION; WALNUT; ALGORITHM; CHROMOSOMAL MAPPING; DNA SEQUENCE; EXPRESSED SEQUENCE TAG; GENETICS; GENOME-WIDE ASSOCIATION STUDY; GENOTYPING TECHNIQUE; OPEN READING FRAME; PHYSIOLOGY; POLLINATION; PROCEDURES;

BACTERIA (MICROORGANISMS); JUGLANS; JUGLANS REGIA;

ALGORITHMS; CHROMOSOME MAPPING; CHROMOSOMES, ARTIFICIAL, BACTERIAL; EXPRESSED SEQUENCE TAGS; GENOME, PLANT; GENOME-WIDE ASSOCIATION STUDY; GENOTYPING TECHNIQUES; JUGLANS; OPEN READING FRAMES; POLLINATION; POLYMORPHISM, SINGLE NUCLEOTIDE; SEQUENCE ANALYSIS, DNA;

EID: 84864372382     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-13-354     Document Type: Article

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