Human more complex than mouse at cellular level

PLoS ONE

Volumn 7, Issue 7, 2012, Pages

  Vinogradov, Alexander E ^a  

^a INSTITUTE OF CYTOLOGY   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR; TRANSCRIPTOME;

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; BRAIN; C2H2 ZINC FINGER DOMAIN GENE; CANCER CELL; CONTROLLED STUDY; EMBRYO; EMBRYO CELL; EXPRESSED SEQUENCE TAG; GENE; GENE DUPLICATION; GENE EXPRESSION; GENOME; HUMAN; HUMAN CELL; HUMAN TISSUE; KRUPPEL ASSOCIATED BOX GENE; MALIGNANT TRANSFORMATION; MOUSE; NONHUMAN; REGULATORY MECHANISM;

ANALYSIS OF VARIANCE; ANIMALS; CELLS; EXPRESSED SEQUENCE TAGS; GENE EXPRESSION REGULATION; GENE LIBRARY; GENES; GENOME; HUMANS; MICE; RECEPTORS, ODORANT; SEQUENCE HOMOLOGY, NUCLEIC ACID; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC; TRANSCRIPTOME; ZINC FINGERS;

MAMMALIA; PRIMATES; RODENTIA; VERTEBRATA;

EID: 84864240469     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0041753     Document Type: Article

References (21)

1. Clark DA, Mitra PP, Wang SS, (2001) Scalable architecture in mammalian brains. Nature 411: 189-193.
2. Vinogradov AE, Anatskaya OV, (2007) Organismal complexity, cell differentiation and gene expression: human over mouse. Nucleic Acids Res 35: 6350-6356.
3. Groner AC, Meylan S, Ciuffi A, Zangger N, Ambrosini G, et al. (2010) KRAB-zinc finger proteins and KAP1 can mediate long-range transcriptional repression through heterochromatin spreading. PLoS Genet 6: e1000869.
4. Lorenz P, Dietmann S, Wilhelm T, Koczan D, Autran S, et al. (2010) The ancient mammalian KRAB zinc finger gene cluster on human chromosome 8q243 illustrates principles of C2H2 zinc finger evolution associated with unique expression profiles in human tissues. BMC Genomics 11: 206.
5. Nowick K, Fields C, Gernat T, Caetano-Anolles D, Kholina N, et al. (2011) Gain, loss and divergence in primate zinc-finger genes: a rich resource for evolution of gene regulatory differences between species. PLoS One 6: e21553.
6. Pontius JU, Wagner L, Schuler GD, (2003) UniGene: a unified view of the transcriptome. In: The NCBI Handbook Bethesda (MD): National Center for Biotechnology Information. Chapter 21, 1-12.
7. Vaquerizas JM, Kummerfeld SK, Teichmann SA, Luscombe NM, (2009) A census of human transcription factors: function, expression and evolution. Nat Rev Genet 10: 252-263.
8. Soares MB, de Fatima Bonaldo M, Hackett JD, Bhattacharya D, (2009) Expressed sequence tags: normalization and subtraction of cDNA libraries expressed sequence tags\normalization and subtraction of cDNA libraries. Methods Mol Biol 533: 109-122.
9. Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, et al. (2012) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 40: D13-D25.
10. Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, et al. (2012) InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res 40: D306-D312.
11. Punta M, Coggill PC, Eberhardt RY, Mistry J, Tate J, et al. (2012) The Pfam protein families database. Nucleic Acids Res 40: D290-D301.
12. Vinogradov AE, (2010) Systemic factors dominate mammal protein evolution. Proc Roy Soc B 277: 1403-1408.
13. Pearson W, (2004) Finding protein and nucleotide similarities with FASTA. Curr Protoc Bioinformatics Chapter 3: Unit 39.
14. Gene Ontology Consortium, (2012) The Gene Ontology: enhancements for 2011. Nucleic Acids Res 40: D559-D564.
15. Go Y, Niimura Y, (2008) Similar numbers but different repertoires of olfactory receptor genes in humans and chimpanzees. Mol Biol Evol 25: 1897-1907.
16. Feldmesser E, Olender T, Khen M, Yanai I, Ophir R, et al. (2006) Widespread ectopic expression of olfactory receptor genes. BMC Genomics 7: 121.
17. Schwanhausser B, Busse D, Li N, Dittmar G, Schuchhardt J, et al. (2011) Global quantification of mammalian gene expression control. Nature 473: 337-342.
18. Meylan S, Groner AC, Ambrosini G, Malani N, Quenneville S, et al. (2011) A gene-rich, transcriptionally active environment and the pre-deposition of repressive marks are predictive of susceptibility to KRAB/KAP1-mediated silencing. BMC Genomics 12: 378.
19. Rangarajan A, Weinberg RA, (2003) Comparative biology of mouse versus human cells: modelling human cancer in mice. Nat Rev Cancer 3: 952-959.
20. Rangarajan A, Hong SJ, Gifford A, Weinberg RA, (2004) Species- and cell type-specific requirements for cellular transformation. Cancer Cell 6: 171-183.
21. Demetrius L, (2005) Of mice and men When it comes to studying ageing and the means to slow it down, mice are not just small humans. EMBO Rep 6: S39-S44.