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Volumn 12, Issue , 2011, Pages

A gene-rich, transcriptionally active environment and the pre-deposition of repressive marks are predictive of susceptibility to KRAB/KAP1-mediated silencing

Author keywords

Chromatin; Heterochromatin; Histone modifications; KAP1; KRAB zinc finger proteins; Transcriptional repression

Indexed keywords

HISTONE; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR KRAB; TRANSCRIPTION FACTOR KRAP1; UNCLASSIFIED DRUG; REPRESSOR PROTEIN; TRIM28 PROTEIN, HUMAN; ZNF350 PROTEIN, HUMAN;

EID: 79960687678     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-12-378     Document Type: Article
Times cited : (23)

References (58)
  • 1
    • 0346274978 scopus 로고    scopus 로고
    • KRAB-containing zinc-finger repressor proteins
    • 10.1186/gb-2003-4-10-231, 328446, 14519192
    • Urrutia R. KRAB-containing zinc-finger repressor proteins. Genome Biol 2003, 4(10):231. 10.1186/gb-2003-4-10-231, 328446, 14519192.
    • (2003) Genome Biol , vol.4 , Issue.10 , pp. 231
    • Urrutia, R.1
  • 3
    • 58949084539 scopus 로고    scopus 로고
    • Adaptive evolution in zinc finger transcription factors
    • 10.1371/journal.pgen.1000325, 2604467, 19119423
    • Emerson RO, Thomas JH. Adaptive evolution in zinc finger transcription factors. PLoS Genet 2009, 5(1):e1000325. 10.1371/journal.pgen.1000325, 2604467, 19119423.
    • (2009) PLoS Genet , vol.5 , Issue.1
    • Emerson, R.O.1    Thomas, J.H.2
  • 4
    • 33745179207 scopus 로고    scopus 로고
    • A comprehensive catalog of human KRAB-associated zinc finger genes: insights into the evolutionary history of a large family of transcriptional repressors
    • 10.1101/gr.4842106, 1457042, 16606702
    • Huntley S, Baggott DM, Hamilton AT, Tran-Gyamfi M, Yang S, Kim J, Gordon L, Branscomb E, Stubbs L. A comprehensive catalog of human KRAB-associated zinc finger genes: insights into the evolutionary history of a large family of transcriptional repressors. Genome Res 2006, 16(5):669-677. 10.1101/gr.4842106, 1457042, 16606702.
    • (2006) Genome Res , vol.16 , Issue.5 , pp. 669-677
    • Huntley, S.1    Baggott, D.M.2    Hamilton, A.T.3    Tran-Gyamfi, M.4    Yang, S.5    Kim, J.6    Gordon, L.7    Branscomb, E.8    Stubbs, L.9
  • 5
    • 46749157875 scopus 로고    scopus 로고
    • Evolution of C2H2-zinc finger genes and subfamilies in mammals: species-specific duplication and loss of clusters, genes and effector domains
    • 10.1186/1471-2148-8-176, 2443715, 18559114
    • Tadepally HD, Burger G, Aubry M. Evolution of C2H2-zinc finger genes and subfamilies in mammals: species-specific duplication and loss of clusters, genes and effector domains. BMC Evol Biol 2008, 8:176. 10.1186/1471-2148-8-176, 2443715, 18559114.
    • (2008) BMC Evol Biol , vol.8 , pp. 176
    • Tadepally, H.D.1    Burger, G.2    Aubry, M.3
  • 6
    • 62549128139 scopus 로고    scopus 로고
    • A census of human transcription factors: function, expression and evolution
    • 10.1038/nrg2538, 19274049
    • Vaquerizas JM, Kummerfeld SK, Teichmann SA, Luscombe NM. A census of human transcription factors: function, expression and evolution. Nat Rev Genet 2009, 10(4):252-263. 10.1038/nrg2538, 19274049.
    • (2009) Nat Rev Genet , vol.10 , Issue.4 , pp. 252-263
    • Vaquerizas, J.M.1    Kummerfeld, S.K.2    Teichmann, S.A.3    Luscombe, N.M.4
  • 7
    • 77952663268 scopus 로고    scopus 로고
    • The ancient mammalian KRAB zinc finger gene cluster on human chromosome 8q24.3 illustrates principles of C2H2 zinc finger evolution associated with unique expression profiles in human tissues
    • 10.1186/1471-2164-11-206, 2865497, 20346131
    • Lorenz P, Dietmann S, Wilhelm T, Koczan D, Autran S, Gad S, Wen G, Ding G, Li Y, Rousseau-Merck MF, Thiesen HJ. The ancient mammalian KRAB zinc finger gene cluster on human chromosome 8q24.3 illustrates principles of C2H2 zinc finger evolution associated with unique expression profiles in human tissues. BMC Genomics 2010, 11:206. 10.1186/1471-2164-11-206, 2865497, 20346131.
    • (2010) BMC Genomics , vol.11 , pp. 206
    • Lorenz, P.1    Dietmann, S.2    Wilhelm, T.3    Koczan, D.4    Autran, S.5    Gad, S.6    Wen, G.7    Ding, G.8    Li, Y.9    Rousseau-Merck, M.F.10    Thiesen, H.J.11
  • 8
    • 0033637860 scopus 로고    scopus 로고
    • Sequence-specific transcriptional corepressor function for BRCA1 through a novel zinc finger protein, ZBRK1
    • 10.1016/S1097-2765(00)00075-7, 11090615
    • Zheng L, Pan H, Li S, Flesken-Nikitin A, Chen PL, Boyer TG, Lee WH. Sequence-specific transcriptional corepressor function for BRCA1 through a novel zinc finger protein, ZBRK1. Mol Cell 2000, 6(4):757-768. 10.1016/S1097-2765(00)00075-7, 11090615.
    • (2000) Mol Cell , vol.6 , Issue.4 , pp. 757-768
    • Zheng, L.1    Pan, H.2    Li, S.3    Flesken-Nikitin, A.4    Chen, P.L.5    Boyer, T.G.6    Lee, W.H.7
  • 9
    • 53249098795 scopus 로고    scopus 로고
    • A maternal-zygotic effect gene, Zfp57, maintains both maternal and paternal imprints
    • 10.1016/j.devcel.2008.08.014, 2593089, 18854139
    • Li X, Ito M, Zhou F, Youngson N, Zuo X, Leder P, Ferguson-Smith AC. A maternal-zygotic effect gene, Zfp57, maintains both maternal and paternal imprints. Dev Cell 2008, 15(4):547-557. 10.1016/j.devcel.2008.08.014, 2593089, 18854139.
    • (2008) Dev Cell , vol.15 , Issue.4 , pp. 547-557
    • Li, X.1    Ito, M.2    Zhou, F.3    Youngson, N.4    Zuo, X.5    Leder, P.6    Ferguson-Smith, A.C.7
  • 10
    • 67349221185 scopus 로고    scopus 로고
    • KRAB-type zinc-finger protein Apak specifically regulates p53-dependent apoptosis
    • 10.1038/ncb1864, 19377469
    • Tian C, Xing G, Xie P, Lu K, Nie J, Wang J, Li L, Gao M, Zhang L, He F. KRAB-type zinc-finger protein Apak specifically regulates p53-dependent apoptosis. Nat Cell Biol 2009, 11(5):580-591. 10.1038/ncb1864, 19377469.
    • (2009) Nat Cell Biol , vol.11 , Issue.5 , pp. 580-591
    • Tian, C.1    Xing, G.2    Xie, P.3    Lu, K.4    Nie, J.5    Wang, J.6    Li, L.7    Gao, M.8    Zhang, L.9    He, F.10
  • 11
    • 0028183182 scopus 로고
    • Kruppel-associated boxes are potent transcriptional repression domains
    • 10.1073/pnas.91.10.4509, 43815, 8183939
    • Margolin JF, Friedman JR, Meyer WK, Vissing H, Thiesen HJ, Rauscher FJ. Kruppel-associated boxes are potent transcriptional repression domains. Proc Natl Acad Sci USA 1994, 91(10):4509-4513. 10.1073/pnas.91.10.4509, 43815, 8183939.
    • (1994) Proc Natl Acad Sci USA , vol.91 , Issue.10 , pp. 4509-4513
    • Margolin, J.F.1    Friedman, J.R.2    Meyer, W.K.3    Vissing, H.4    Thiesen, H.J.5    Rauscher, F.J.6
  • 13
    • 0030479071 scopus 로고    scopus 로고
    • A novel member of the RING finger family, KRIP-1, associates with the KRAB-A transcriptional repressor domain of zinc finger proteins
    • 10.1073/pnas.93.26.15299, 26399, 8986806
    • Kim SS, Chen YM, O'Leary E, Witzgall R, Vidal M, Bonventre JV. A novel member of the RING finger family, KRIP-1, associates with the KRAB-A transcriptional repressor domain of zinc finger proteins. Proc Natl Acad Sci USA 1996, 93(26):15299-15304. 10.1073/pnas.93.26.15299, 26399, 8986806.
    • (1996) Proc Natl Acad Sci USA , vol.93 , Issue.26 , pp. 15299-15304
    • Kim, S.S.1    Chen, Y.M.2    O'Leary, E.3    Witzgall, R.4    Vidal, M.5    Bonventre, J.V.6
  • 14
    • 0030459738 scopus 로고    scopus 로고
    • Transcriptional repression by RING finger protein TIF1 beta that interacts with the KRAB repressor domain of KOX1
    • 10.1093/nar/24.24.4859, 146346, 9016654
    • Moosmann P, Georgiev O, Le Douarin B, Bourquin JP, Schaffner W. Transcriptional repression by RING finger protein TIF1 beta that interacts with the KRAB repressor domain of KOX1. Nucleic Acids Res 1996, 24(24):4859-4867. 10.1093/nar/24.24.4859, 146346, 9016654.
    • (1996) Nucleic Acids Res , vol.24 , Issue.24 , pp. 4859-4867
    • Moosmann, P.1    Georgiev, O.2    Le Douarin, B.3    Bourquin, J.P.4    Schaffner, W.5
  • 15
    • 0029841744 scopus 로고    scopus 로고
    • A possible involvement of TIF1 alpha and TIF1 beta in the epigenetic control of transcription by nuclear receptors
    • 452494, 8978696
    • Le Douarin B, Nielsen AL, Garnier JM, Ichinose H, Jeanmougin F, Losson R, Chambon P. A possible involvement of TIF1 alpha and TIF1 beta in the epigenetic control of transcription by nuclear receptors. Embo J 1996, 15(23):6701-6715. 452494, 8978696.
    • (1996) Embo J , vol.15 , Issue.23 , pp. 6701-6715
    • Le Douarin, B.1    Nielsen, A.L.2    Garnier, J.M.3    Ichinose, H.4    Jeanmougin, F.5    Losson, R.6    Chambon, P.7
  • 16
    • 0033013868 scopus 로고    scopus 로고
    • KAP-1 corepressor protein interacts and colocalizes with heterochromatic and euchromatic HP1 proteins: a potential role for Kruppel-associated box-zinc finger proteins in heterochromatin-mediated gene silencing
    • 104396, 10330177
    • Ryan RF, Schultz DC, Ayyanathan K, Singh PB, Friedman JR, Fredericks WJ, Rauscher FJ. KAP-1 corepressor protein interacts and colocalizes with heterochromatic and euchromatic HP1 proteins: a potential role for Kruppel-associated box-zinc finger proteins in heterochromatin-mediated gene silencing. Mol Cell Biol 1999, 19(6):4366-4378. 104396, 10330177.
    • (1999) Mol Cell Biol , vol.19 , Issue.6 , pp. 4366-4378
    • Ryan, R.F.1    Schultz, D.C.2    Ayyanathan, K.3    Singh, P.B.4    Friedman, J.R.5    Fredericks, W.J.6    Rauscher, F.J.7
  • 17
    • 0034704078 scopus 로고    scopus 로고
    • A novel nuclear receptor corepressor complex, N-CoR, contains components of the mammalian SWI/SNF complex and the corepressor KAP-1
    • 10.1074/jbc.M007864200, 11013263
    • Underhill C, Qutob MS, Yee SP, Torchia J. A novel nuclear receptor corepressor complex, N-CoR, contains components of the mammalian SWI/SNF complex and the corepressor KAP-1. J Biol Chem 2000, 275(51):40463-40470. 10.1074/jbc.M007864200, 11013263.
    • (2000) J Biol Chem , vol.275 , Issue.51 , pp. 40463-40470
    • Underhill, C.1    Qutob, M.S.2    Yee, S.P.3    Torchia, J.4
  • 18
    • 0034602922 scopus 로고    scopus 로고
    • Reconstitution of the KRAB-KAP-1 repressor complex: a model system for defining the molecular anatomy of RING-B box-coiled-coil domain-mediated protein-protein interactions
    • 10.1006/jmbi.1999.3402, 10653693
    • Peng H, Begg GE, Schultz DC, Friedman JR, Jensen DE, Speicher DW, Rauscher FJ. Reconstitution of the KRAB-KAP-1 repressor complex: a model system for defining the molecular anatomy of RING-B box-coiled-coil domain-mediated protein-protein interactions. J Mol Biol 2000, 295(5):1139-1162. 10.1006/jmbi.1999.3402, 10653693.
    • (2000) J Mol Biol , vol.295 , Issue.5 , pp. 1139-1162
    • Peng, H.1    Begg, G.E.2    Schultz, D.C.3    Friedman, J.R.4    Jensen, D.E.5    Speicher, D.W.6    Rauscher, F.J.7
  • 19
    • 0035118229 scopus 로고    scopus 로고
    • Targeting histone deacetylase complexes via KRAB-zinc finger proteins: the PHD and bromodomains of KAP-1 form a cooperative unit that recruits a novel isoform of the Mi-2alpha subunit of NuRD
    • 10.1101/gad.869501, 312636, 11230151
    • Schultz DC, Friedman JR, Rauscher FJ. Targeting histone deacetylase complexes via KRAB-zinc finger proteins: the PHD and bromodomains of KAP-1 form a cooperative unit that recruits a novel isoform of the Mi-2alpha subunit of NuRD. Genes Dev 2001, 15(4):428-443. 10.1101/gad.869501, 312636, 11230151.
    • (2001) Genes Dev , vol.15 , Issue.4 , pp. 428-443
    • Schultz, D.C.1    Friedman, J.R.2    Rauscher, F.J.3
  • 20
    • 0037089626 scopus 로고    scopus 로고
    • SETDB1: a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins
    • 10.1101/gad.973302, 152359, 11959841
    • Schultz DC, Ayyanathan K, Negorev D, Maul GG, Rauscher FJ. SETDB1: a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins. Genes Dev 2002, 16(8):919-932. 10.1101/gad.973302, 152359, 11959841.
    • (2002) Genes Dev , vol.16 , Issue.8 , pp. 919-932
    • Schultz, D.C.1    Ayyanathan, K.2    Negorev, D.3    Maul, G.G.4    Rauscher, F.J.5
  • 21
    • 4444372922 scopus 로고    scopus 로고
    • Association of the transcriptional corepressor TIF1beta with heterochromatin protein 1 (HP1): an essential role for progression through differentiation
    • 10.1101/gad.302904, 515292, 15342492
    • Cammas F, Herzog M, Lerouge T, Chambon P, Losson R. Association of the transcriptional corepressor TIF1beta with heterochromatin protein 1 (HP1): an essential role for progression through differentiation. Genes Dev 2004, 18(17):2147-2160. 10.1101/gad.302904, 515292, 15342492.
    • (2004) Genes Dev , vol.18 , Issue.17 , pp. 2147-2160
    • Cammas, F.1    Herzog, M.2    Lerouge, T.3    Chambon, P.4    Losson, R.5
  • 22
    • 36348930084 scopus 로고    scopus 로고
    • The Kruppel-associated box repressor domain can trigger de novo promoter methylation during mouse early embryogenesis
    • 10.1074/jbc.M705898200, 17893143
    • Wiznerowicz M, Jakobsson J, Szulc J, Liao S, Quazzola A, Beermann F, Aebischer P, Trono D. The Kruppel-associated box repressor domain can trigger de novo promoter methylation during mouse early embryogenesis. J Biol Chem 2007, 282(47):34535-34541. 10.1074/jbc.M705898200, 17893143.
    • (2007) J Biol Chem , vol.282 , Issue.47 , pp. 34535-34541
    • Wiznerowicz, M.1    Jakobsson, J.2    Szulc, J.3    Liao, S.4    Quazzola, A.5    Beermann, F.6    Aebischer, P.7    Trono, D.8
  • 23
    • 0041624239 scopus 로고    scopus 로고
    • Regulated recruitment of HP1 to a euchromatic gene induces mitotically heritable, epigenetic gene silencing: a mammalian cell culture model of gene variegation
    • 10.1101/gad.1102803, 196232, 12869583
    • Ayyanathan K, Lechner MS, Bell P, Maul GG, Schultz DC, Yamada Y, Tanaka K, Torigoe K, Rauscher FJ. Regulated recruitment of HP1 to a euchromatic gene induces mitotically heritable, epigenetic gene silencing: a mammalian cell culture model of gene variegation. Genes Dev 2003, 17(15):1855-1869. 10.1101/gad.1102803, 196232, 12869583.
    • (2003) Genes Dev , vol.17 , Issue.15 , pp. 1855-1869
    • Ayyanathan, K.1    Lechner, M.S.2    Bell, P.3    Maul, G.G.4    Schultz, D.C.5    Yamada, Y.6    Tanaka, K.7    Torigoe, K.8    Rauscher, F.J.9
  • 24
    • 33751007001 scopus 로고    scopus 로고
    • The KAP1 corepressor functions to coordinate the assembly of de novo HP1-demarcated microenvironments of heterochromatin required for KRAB zinc finger protein-mediated transcriptional repression
    • 10.1128/MCB.00487-06, 1636786, 16954381
    • Sripathy SP, Stevens J, Schultz DC. The KAP1 corepressor functions to coordinate the assembly of de novo HP1-demarcated microenvironments of heterochromatin required for KRAB zinc finger protein-mediated transcriptional repression. Mol Cell Biol 2006, 26(22):8623-8638. 10.1128/MCB.00487-06, 1636786, 16954381.
    • (2006) Mol Cell Biol , vol.26 , Issue.22 , pp. 8623-8638
    • Sripathy, S.P.1    Stevens, J.2    Schultz, D.C.3
  • 25
    • 34347353316 scopus 로고    scopus 로고
    • Genome-wide analysis of KAP1 binding suggests autoregulation of KRAB-ZNFs
    • 10.1371/journal.pgen.0030089, 1885280, 17542650
    • O'Geen H, Squazzo SL, Iyengar S, Blahnik K, Rinn JL, Chang HY, Green R, Farnham PJ. Genome-wide analysis of KAP1 binding suggests autoregulation of KRAB-ZNFs. PLoS Genet 2007, 3(6):e89. 10.1371/journal.pgen.0030089, 1885280, 17542650.
    • (2007) PLoS Genet , vol.3 , Issue.6
    • O'Geen, H.1    Squazzo, S.L.2    Iyengar, S.3    Blahnik, K.4    Rinn, J.L.5    Chang, H.Y.6    Green, R.7    Farnham, P.J.8
  • 27
    • 67650096728 scopus 로고    scopus 로고
    • The HP1alpha-CAF1-SetDB1-containing complex provides H3K9me1 for Suv39-mediated K9me3 in pericentric heterochromatin
    • 10.1038/embor.2009.90, 2727428, 19498464
    • Loyola A, Tagami H, Bonaldi T, Roche D, Quivy JP, Imhof A, Nakatani Y, Dent SY, Almouzni G. The HP1alpha-CAF1-SetDB1-containing complex provides H3K9me1 for Suv39-mediated K9me3 in pericentric heterochromatin. EMBO Rep 2009, 10(7):769-775. 10.1038/embor.2009.90, 2727428, 19498464.
    • (2009) EMBO Rep , vol.10 , Issue.7 , pp. 769-775
    • Loyola, A.1    Tagami, H.2    Bonaldi, T.3    Roche, D.4    Quivy, J.P.5    Imhof, A.6    Nakatani, Y.7    Dent, S.Y.8    Almouzni, G.9
  • 28
    • 77950421703 scopus 로고    scopus 로고
    • KRAB-zinc finger proteins and KAP1 can mediate long-range transcriptional repression through heterochromatin spreading
    • 10.1371/journal.pgen.1000869, 2832679, 20221260
    • Groner AC, Meylan S, Ciuffi A, Zangger N, Ambrosini G, Denervaud N, Bucher P, Trono D. KRAB-zinc finger proteins and KAP1 can mediate long-range transcriptional repression through heterochromatin spreading. PLoS Genet 2010, 6(3):e1000869. 10.1371/journal.pgen.1000869, 2832679, 20221260.
    • (2010) PLoS Genet , vol.6 , Issue.3
    • Groner, A.C.1    Meylan, S.2    Ciuffi, A.3    Zangger, N.4    Ambrosini, G.5    Denervaud, N.6    Bucher, P.7    Trono, D.8
  • 29
    • 0028897720 scopus 로고
    • Tetracycline-reversible silencing of eukaryotic promoters
    • 230416, 7891684
    • Deuschle U, Meyer WK, Thiesen HJ. Tetracycline-reversible silencing of eukaryotic promoters. Mol Cell Biol 1995, 15(4):1907-1914. 230416, 7891684.
    • (1995) Mol Cell Biol , vol.15 , Issue.4 , pp. 1907-1914
    • Deuschle, U.1    Meyer, W.K.2    Thiesen, H.J.3
  • 30
    • 0030855387 scopus 로고    scopus 로고
    • Silencing of RNA polymerases II and III-dependent transcription by the KRAB protein domain of KOX1, a Kruppel-type zinc finger factor
    • 10.1515/bchm.1997.378.7.669, 9278146
    • Moosmann P, Georgiev O, Thiesen HJ, Hagmann M, Schaffner W. Silencing of RNA polymerases II and III-dependent transcription by the KRAB protein domain of KOX1, a Kruppel-type zinc finger factor. Biol Chem 1997, 378(7):669-677. 10.1515/bchm.1997.378.7.669, 9278146.
    • (1997) Biol Chem , vol.378 , Issue.7 , pp. 669-677
    • Moosmann, P.1    Georgiev, O.2    Thiesen, H.J.3    Hagmann, M.4    Schaffner, W.5
  • 31
    • 0037162715 scopus 로고    scopus 로고
    • HIV-1 integration in the human genome favors active genes and local hotspots
    • 10.1016/S0092-8674(02)00864-4, 12202041
    • Schroder AR, Shinn P, Chen H, Berry C, Ecker JR, Bushman F. HIV-1 integration in the human genome favors active genes and local hotspots. Cell 2002, 110(4):521-529. 10.1016/S0092-8674(02)00864-4, 12202041.
    • (2002) Cell , vol.110 , Issue.4 , pp. 521-529
    • Schroder, A.R.1    Shinn, P.2    Chen, H.3    Berry, C.4    Ecker, J.R.5    Bushman, F.6
  • 32
    • 19344375031 scopus 로고    scopus 로고
    • Retroviral DNA integration: ASLV, HIV, and MLV show distinct target site preferences
    • 10.1371/journal.pbio.0020234, 509299, 15314653
    • Mitchell RS, Beitzel BF, Schroder AR, Shinn P, Chen H, Berry CC, Ecker JR, Bushman FD. Retroviral DNA integration: ASLV, HIV, and MLV show distinct target site preferences. PLoS Biol 2004, 2(8):E234. 10.1371/journal.pbio.0020234, 509299, 15314653.
    • (2004) PLoS Biol , vol.2 , Issue.8
    • Mitchell, R.S.1    Beitzel, B.F.2    Schroder, A.R.3    Shinn, P.4    Chen, H.5    Berry, C.C.6    Ecker, J.R.7    Bushman, F.D.8
  • 34
    • 34547635063 scopus 로고    scopus 로고
    • HIV integration site selection: analysis by massively parallel pyrosequencing reveals association with epigenetic modifications
    • 10.1101/gr.6286907, 1933515, 17545577
    • Wang GP, Ciuffi A, Leipzig J, Berry CC, Bushman FD. HIV integration site selection: analysis by massively parallel pyrosequencing reveals association with epigenetic modifications. Genome Res 2007, 17(8):1186-1194. 10.1101/gr.6286907, 1933515, 17545577.
    • (2007) Genome Res , vol.17 , Issue.8 , pp. 1186-1194
    • Wang, G.P.1    Ciuffi, A.2    Leipzig, J.3    Berry, C.C.4    Bushman, F.D.5
  • 35
    • 39349104728 scopus 로고    scopus 로고
    • Indexing strategies for rapid searches of short words in genome sequences
    • 10.1371/journal.pone.0000579, 1894650, 17593978
    • Iseli C, Ambrosini G, Bucher P, Jongeneel CV. Indexing strategies for rapid searches of short words in genome sequences. PLoS One 2007, 2(6):e579. 10.1371/journal.pone.0000579, 1894650, 17593978.
    • (2007) PLoS One , vol.2 , Issue.6
    • Iseli, C.1    Ambrosini, G.2    Bucher, P.3    Jongeneel, C.V.4
  • 37
    • 15244346492 scopus 로고    scopus 로고
    • Promoter trapping reveals significant differences in integration site selection between MLV and HIV vectors in primary hematopoietic cells
    • 10.1182/blood-2004-03-0798, 15542582
    • De Palma M, Montini E, Santoni de Sio FR, Benedicenti F, Gentile A, Medico E, Naldini L. Promoter trapping reveals significant differences in integration site selection between MLV and HIV vectors in primary hematopoietic cells. Blood 2005, 105(6):2307-2315. 10.1182/blood-2004-03-0798, 15542582.
    • (2005) Blood , vol.105 , Issue.6 , pp. 2307-2315
    • De Palma, M.1    Montini, E.2    Santoni de Sio, F.R.3    Benedicenti, F.4    Gentile, A.5    Medico, E.6    Naldini, L.7
  • 38
    • 33751418954 scopus 로고    scopus 로고
    • Selection of target sites for mobile DNA integration in the human genome
    • 10.1371/journal.pcbi.0020157, 1664696, 17166054
    • Berry C, Hannenhalli S, Leipzig J, Bushman FD. Selection of target sites for mobile DNA integration in the human genome. PLoS Comput Biol 2006, 2(11):e157. 10.1371/journal.pcbi.0020157, 1664696, 17166054.
    • (2006) PLoS Comput Biol , vol.2 , Issue.11
    • Berry, C.1    Hannenhalli, S.2    Leipzig, J.3    Bushman, F.D.4
  • 39
    • 60149095014 scopus 로고    scopus 로고
    • Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains
    • 2612964, 19056695
    • Cuddapah S, Jothi R, Schones DE, Roh TY, Cui K, Zhao K. Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains. Genome Res 2009, 19(1):24-32. 2612964, 19056695.
    • (2009) Genome Res , vol.19 , Issue.1 , pp. 24-32
    • Cuddapah, S.1    Jothi, R.2    Schones, D.E.3    Roh, T.Y.4    Cui, K.5    Zhao, K.6
  • 40
    • 68149150830 scopus 로고    scopus 로고
    • H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions
    • 10.1038/ng.409, 3125718, 19633671
    • Jin C, Zang C, Wei G, Cui K, Peng W, Zhao K, Felsenfeld G. H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions. Nat Genet 2009, 41(8):941-945. 10.1038/ng.409, 3125718, 19633671.
    • (2009) Nat Genet , vol.41 , Issue.8 , pp. 941-945
    • Jin, C.1    Zang, C.2    Wei, G.3    Cui, K.4    Peng, W.5    Zhao, K.6    Felsenfeld, G.7
  • 41
    • 69449102464 scopus 로고    scopus 로고
    • Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes
    • 10.1016/j.cell.2009.06.049, 2750862, 19698979
    • Wang Z, Zang C, Cui K, Schones DE, Barski A, Peng W, Zhao K. Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes. Cell 2009, 138(5):1019-1031. 10.1016/j.cell.2009.06.049, 2750862, 19698979.
    • (2009) Cell , vol.138 , Issue.5 , pp. 1019-1031
    • Wang, Z.1    Zang, C.2    Cui, K.3    Schones, D.E.4    Barski, A.5    Peng, W.6    Zhao, K.7
  • 42
    • 0036467996 scopus 로고    scopus 로고
    • Insulators: many functions, many mechanisms
    • 10.1101/gad.954702, 11825869
    • West AG, Gaszner M, Felsenfeld G. Insulators: many functions, many mechanisms. Genes Dev 2002, 16(3):271-288. 10.1101/gad.954702, 11825869.
    • (2002) Genes Dev , vol.16 , Issue.3 , pp. 271-288
    • West, A.G.1    Gaszner, M.2    Felsenfeld, G.3
  • 43
    • 33747453473 scopus 로고    scopus 로고
    • Insulators: exploiting transcriptional and epigenetic mechanisms
    • 10.1038/nrg1925, 16909129
    • Gaszner M, Felsenfeld G. Insulators: exploiting transcriptional and epigenetic mechanisms. Nat Rev Genet 2006, 7(9):703-713. 10.1038/nrg1925, 16909129.
    • (2006) Nat Rev Genet , vol.7 , Issue.9 , pp. 703-713
    • Gaszner, M.1    Felsenfeld, G.2
  • 44
    • 0037076316 scopus 로고    scopus 로고
    • Position-effect protection and enhancer blocking by the chicken beta-globin insulator are separable activities
    • 10.1073/pnas.102179399, 124498, 12011446
    • Recillas-Targa F, Pikaart MJ, Burgess-Beusse B, Bell AC, Litt MD, West AG, Gaszner M, Felsenfeld G. Position-effect protection and enhancer blocking by the chicken beta-globin insulator are separable activities. Proc Natl Acad Sci USA 2002, 99(10):6883-6888. 10.1073/pnas.102179399, 124498, 12011446.
    • (2002) Proc Natl Acad Sci USA , vol.99 , Issue.10 , pp. 6883-6888
    • Recillas-Targa, F.1    Pikaart, M.J.2    Burgess-Beusse, B.3    Bell, A.C.4    Litt, M.D.5    West, A.G.6    Gaszner, M.7    Felsenfeld, G.8
  • 45
    • 33644850958 scopus 로고    scopus 로고
    • Heterochromatin protein 1: don't judge the book by its cover!
    • 10.1016/j.gde.2006.02.013, 16503133
    • Hediger F, Gasser SM. Heterochromatin protein 1: don't judge the book by its cover!. Curr Opin Genet Dev 2006, 16(2):143-150. 10.1016/j.gde.2006.02.013, 16503133.
    • (2006) Curr Opin Genet Dev , vol.16 , Issue.2 , pp. 143-150
    • Hediger, F.1    Gasser, S.M.2
  • 47
    • 78650081714 scopus 로고    scopus 로고
    • ZNF274 recruits the histone methyltransferase SETDB1 to the 3' ends of ZNF genes
    • 10.1371/journal.pone.0015082, 2999557, 21170338
    • Frietze S, O'Geen H, Blahnik KR, Jin VX, Farnham PJ. ZNF274 recruits the histone methyltransferase SETDB1 to the 3' ends of ZNF genes. PLoS One 2010, 5(12):e15082. 10.1371/journal.pone.0015082, 2999557, 21170338.
    • (2010) PLoS One , vol.5 , Issue.12
    • Frietze, S.1    O'Geen, H.2    Blahnik, K.R.3    Jin, V.X.4    Farnham, P.J.5
  • 48
    • 77949432014 scopus 로고    scopus 로고
    • PHF8, a gene associated with cleft lip/palate and mental retardation, encodes for an Nepsilon-dimethyl lysine demethylase
    • 10.1093/hmg/ddp480, 19843542
    • Loenarz C, Ge W, Coleman ML, Rose NR, Cooper CD, Klose RJ, Ratcliffe PJ, Schofield CJ. PHF8, a gene associated with cleft lip/palate and mental retardation, encodes for an Nepsilon-dimethyl lysine demethylase. Hum Mol Genet 2010, 19(2):217-222. 10.1093/hmg/ddp480, 19843542.
    • (2010) Hum Mol Genet , vol.19 , Issue.2 , pp. 217-222
    • Loenarz, C.1    Ge, W.2    Coleman, M.L.3    Rose, N.R.4    Cooper, C.D.5    Klose, R.J.6    Ratcliffe, P.J.7    Schofield, C.J.8
  • 51
    • 0025204569 scopus 로고
    • Position-effect variegation after 60 years
    • Henikoff S. Position-effect variegation after 60 years. Trends Genet 1990, 6(12):422-426.
    • (1990) Trends Genet , vol.6 , Issue.12 , pp. 422-426
    • Henikoff, S.1
  • 52
    • 0043210428 scopus 로고    scopus 로고
    • Conditional suppression of cellular genes: lentivirus vector-mediated drug-inducible RNA interference
    • 10.1128/JVI.77.16.8957-8951.2003, 167245, 12885912
    • Wiznerowicz M, Trono D. Conditional suppression of cellular genes: lentivirus vector-mediated drug-inducible RNA interference. J Virol 2003, 77(16):8957-8961. 10.1128/JVI.77.16.8957-8951.2003, 167245, 12885912.
    • (2003) J Virol , vol.77 , Issue.16 , pp. 8957-8961
    • Wiznerowicz, M.1    Trono, D.2
  • 53
    • 0037043699 scopus 로고    scopus 로고
    • Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein
    • 10.1038/nature00939, 12167863
    • Sheehy AM, Gaddis NC, Choi JD, Malim MH. Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein. Nature 2002, 418(6898):646-650. 10.1038/nature00939, 12167863.
    • (2002) Nature , vol.418 , Issue.6898 , pp. 646-650
    • Sheehy, A.M.1    Gaddis, N.C.2    Choi, J.D.3    Malim, M.H.4
  • 55
    • 0023710206 scopus 로고
    • Comparing the areas under two or more correlated receiver operating characteristic curves: a nonparametric approach
    • 10.2307/2531595, 3203132
    • DeLong ER, DeLong DM, Clarke-Pearson DL. Comparing the areas under two or more correlated receiver operating characteristic curves: a nonparametric approach. Biometrics 1988, 44(3):837-845. 10.2307/2531595, 3203132.
    • (1988) Biometrics , vol.44 , Issue.3 , pp. 837-845
    • DeLong, E.R.1    DeLong, D.M.2    Clarke-Pearson, D.L.3
  • 56
    • 1542405872 scopus 로고    scopus 로고
    • Pharmacogenomic identification of targets for adjuvant therapy with the topoisomerase poison camptothecin
    • 10.1158/0008-5472.CAN-03-2029, 15026349
    • Carson JP, Zhang N, Frampton GM, Gerry NP, Lenburg ME, Christman MF. Pharmacogenomic identification of targets for adjuvant therapy with the topoisomerase poison camptothecin. Cancer Res 2004, 64(6):2096-2104. 10.1158/0008-5472.CAN-03-2029, 15026349.
    • (2004) Cancer Res , vol.64 , Issue.6 , pp. 2096-2104
    • Carson, J.P.1    Zhang, N.2    Frampton, G.M.3    Gerry, N.P.4    Lenburg, M.E.5    Christman, M.F.6
  • 58
    • 0142121516 scopus 로고    scopus 로고
    • Exploration, normalization, and summaries of high density oligonucleotide array probe level data
    • 10.1093/biostatistics/4.2.249, 12925520
    • Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 2003, 4(2):249-264. 10.1093/biostatistics/4.2.249, 12925520.
    • (2003) Biostatistics , vol.4 , Issue.2 , pp. 249-264
    • Irizarry, R.A.1    Hobbs, B.2    Collin, F.3    Beazer-Barclay, Y.D.4    Antonellis, K.J.5    Scherf, U.6    Speed, T.P.7


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