-
1
-
-
0346274978
-
KRAB-containing zinc-finger repressor proteins
-
10.1186/gb-2003-4-10-231, 328446, 14519192
-
Urrutia R. KRAB-containing zinc-finger repressor proteins. Genome Biol 2003, 4(10):231. 10.1186/gb-2003-4-10-231, 328446, 14519192.
-
(2003)
Genome Biol
, vol.4
, Issue.10
, pp. 231
-
-
Urrutia, R.1
-
2
-
-
58149178574
-
SysZNF: the C2H2 zinc finger gene database
-
Database
-
Ding G, Lorenz P, Kreutzer M, Li Y, Thiesen HJ. SysZNF: the C2H2 zinc finger gene database. Nucleic Acids Res 2009, (37 Database):D267-273.
-
(2009)
Nucleic Acids Res
, Issue.37
-
-
Ding, G.1
Lorenz, P.2
Kreutzer, M.3
Li, Y.4
Thiesen, H.J.5
-
3
-
-
58949084539
-
Adaptive evolution in zinc finger transcription factors
-
10.1371/journal.pgen.1000325, 2604467, 19119423
-
Emerson RO, Thomas JH. Adaptive evolution in zinc finger transcription factors. PLoS Genet 2009, 5(1):e1000325. 10.1371/journal.pgen.1000325, 2604467, 19119423.
-
(2009)
PLoS Genet
, vol.5
, Issue.1
-
-
Emerson, R.O.1
Thomas, J.H.2
-
4
-
-
33745179207
-
A comprehensive catalog of human KRAB-associated zinc finger genes: insights into the evolutionary history of a large family of transcriptional repressors
-
10.1101/gr.4842106, 1457042, 16606702
-
Huntley S, Baggott DM, Hamilton AT, Tran-Gyamfi M, Yang S, Kim J, Gordon L, Branscomb E, Stubbs L. A comprehensive catalog of human KRAB-associated zinc finger genes: insights into the evolutionary history of a large family of transcriptional repressors. Genome Res 2006, 16(5):669-677. 10.1101/gr.4842106, 1457042, 16606702.
-
(2006)
Genome Res
, vol.16
, Issue.5
, pp. 669-677
-
-
Huntley, S.1
Baggott, D.M.2
Hamilton, A.T.3
Tran-Gyamfi, M.4
Yang, S.5
Kim, J.6
Gordon, L.7
Branscomb, E.8
Stubbs, L.9
-
5
-
-
46749157875
-
Evolution of C2H2-zinc finger genes and subfamilies in mammals: species-specific duplication and loss of clusters, genes and effector domains
-
10.1186/1471-2148-8-176, 2443715, 18559114
-
Tadepally HD, Burger G, Aubry M. Evolution of C2H2-zinc finger genes and subfamilies in mammals: species-specific duplication and loss of clusters, genes and effector domains. BMC Evol Biol 2008, 8:176. 10.1186/1471-2148-8-176, 2443715, 18559114.
-
(2008)
BMC Evol Biol
, vol.8
, pp. 176
-
-
Tadepally, H.D.1
Burger, G.2
Aubry, M.3
-
6
-
-
62549128139
-
A census of human transcription factors: function, expression and evolution
-
10.1038/nrg2538, 19274049
-
Vaquerizas JM, Kummerfeld SK, Teichmann SA, Luscombe NM. A census of human transcription factors: function, expression and evolution. Nat Rev Genet 2009, 10(4):252-263. 10.1038/nrg2538, 19274049.
-
(2009)
Nat Rev Genet
, vol.10
, Issue.4
, pp. 252-263
-
-
Vaquerizas, J.M.1
Kummerfeld, S.K.2
Teichmann, S.A.3
Luscombe, N.M.4
-
7
-
-
77952663268
-
The ancient mammalian KRAB zinc finger gene cluster on human chromosome 8q24.3 illustrates principles of C2H2 zinc finger evolution associated with unique expression profiles in human tissues
-
10.1186/1471-2164-11-206, 2865497, 20346131
-
Lorenz P, Dietmann S, Wilhelm T, Koczan D, Autran S, Gad S, Wen G, Ding G, Li Y, Rousseau-Merck MF, Thiesen HJ. The ancient mammalian KRAB zinc finger gene cluster on human chromosome 8q24.3 illustrates principles of C2H2 zinc finger evolution associated with unique expression profiles in human tissues. BMC Genomics 2010, 11:206. 10.1186/1471-2164-11-206, 2865497, 20346131.
-
(2010)
BMC Genomics
, vol.11
, pp. 206
-
-
Lorenz, P.1
Dietmann, S.2
Wilhelm, T.3
Koczan, D.4
Autran, S.5
Gad, S.6
Wen, G.7
Ding, G.8
Li, Y.9
Rousseau-Merck, M.F.10
Thiesen, H.J.11
-
8
-
-
0033637860
-
Sequence-specific transcriptional corepressor function for BRCA1 through a novel zinc finger protein, ZBRK1
-
10.1016/S1097-2765(00)00075-7, 11090615
-
Zheng L, Pan H, Li S, Flesken-Nikitin A, Chen PL, Boyer TG, Lee WH. Sequence-specific transcriptional corepressor function for BRCA1 through a novel zinc finger protein, ZBRK1. Mol Cell 2000, 6(4):757-768. 10.1016/S1097-2765(00)00075-7, 11090615.
-
(2000)
Mol Cell
, vol.6
, Issue.4
, pp. 757-768
-
-
Zheng, L.1
Pan, H.2
Li, S.3
Flesken-Nikitin, A.4
Chen, P.L.5
Boyer, T.G.6
Lee, W.H.7
-
9
-
-
53249098795
-
A maternal-zygotic effect gene, Zfp57, maintains both maternal and paternal imprints
-
10.1016/j.devcel.2008.08.014, 2593089, 18854139
-
Li X, Ito M, Zhou F, Youngson N, Zuo X, Leder P, Ferguson-Smith AC. A maternal-zygotic effect gene, Zfp57, maintains both maternal and paternal imprints. Dev Cell 2008, 15(4):547-557. 10.1016/j.devcel.2008.08.014, 2593089, 18854139.
-
(2008)
Dev Cell
, vol.15
, Issue.4
, pp. 547-557
-
-
Li, X.1
Ito, M.2
Zhou, F.3
Youngson, N.4
Zuo, X.5
Leder, P.6
Ferguson-Smith, A.C.7
-
10
-
-
67349221185
-
KRAB-type zinc-finger protein Apak specifically regulates p53-dependent apoptosis
-
10.1038/ncb1864, 19377469
-
Tian C, Xing G, Xie P, Lu K, Nie J, Wang J, Li L, Gao M, Zhang L, He F. KRAB-type zinc-finger protein Apak specifically regulates p53-dependent apoptosis. Nat Cell Biol 2009, 11(5):580-591. 10.1038/ncb1864, 19377469.
-
(2009)
Nat Cell Biol
, vol.11
, Issue.5
, pp. 580-591
-
-
Tian, C.1
Xing, G.2
Xie, P.3
Lu, K.4
Nie, J.5
Wang, J.6
Li, L.7
Gao, M.8
Zhang, L.9
He, F.10
-
11
-
-
0028183182
-
Kruppel-associated boxes are potent transcriptional repression domains
-
10.1073/pnas.91.10.4509, 43815, 8183939
-
Margolin JF, Friedman JR, Meyer WK, Vissing H, Thiesen HJ, Rauscher FJ. Kruppel-associated boxes are potent transcriptional repression domains. Proc Natl Acad Sci USA 1994, 91(10):4509-4513. 10.1073/pnas.91.10.4509, 43815, 8183939.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, Issue.10
, pp. 4509-4513
-
-
Margolin, J.F.1
Friedman, J.R.2
Meyer, W.K.3
Vissing, H.4
Thiesen, H.J.5
Rauscher, F.J.6
-
12
-
-
0029858585
-
KAP-1, a novel corepressor for the highly conserved KRAB repression domain
-
10.1101/gad.10.16.2067, 8769649
-
Friedman JR, Fredericks WJ, Jensen DE, Speicher DW, Huang XP, Neilson EG, Rauscher FJ. KAP-1, a novel corepressor for the highly conserved KRAB repression domain. Genes Dev 1996, 10(16):2067-2078. 10.1101/gad.10.16.2067, 8769649.
-
(1996)
Genes Dev
, vol.10
, Issue.16
, pp. 2067-2078
-
-
Friedman, J.R.1
Fredericks, W.J.2
Jensen, D.E.3
Speicher, D.W.4
Huang, X.P.5
Neilson, E.G.6
Rauscher, F.J.7
-
13
-
-
0030479071
-
A novel member of the RING finger family, KRIP-1, associates with the KRAB-A transcriptional repressor domain of zinc finger proteins
-
10.1073/pnas.93.26.15299, 26399, 8986806
-
Kim SS, Chen YM, O'Leary E, Witzgall R, Vidal M, Bonventre JV. A novel member of the RING finger family, KRIP-1, associates with the KRAB-A transcriptional repressor domain of zinc finger proteins. Proc Natl Acad Sci USA 1996, 93(26):15299-15304. 10.1073/pnas.93.26.15299, 26399, 8986806.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, Issue.26
, pp. 15299-15304
-
-
Kim, S.S.1
Chen, Y.M.2
O'Leary, E.3
Witzgall, R.4
Vidal, M.5
Bonventre, J.V.6
-
14
-
-
0030459738
-
Transcriptional repression by RING finger protein TIF1 beta that interacts with the KRAB repressor domain of KOX1
-
10.1093/nar/24.24.4859, 146346, 9016654
-
Moosmann P, Georgiev O, Le Douarin B, Bourquin JP, Schaffner W. Transcriptional repression by RING finger protein TIF1 beta that interacts with the KRAB repressor domain of KOX1. Nucleic Acids Res 1996, 24(24):4859-4867. 10.1093/nar/24.24.4859, 146346, 9016654.
-
(1996)
Nucleic Acids Res
, vol.24
, Issue.24
, pp. 4859-4867
-
-
Moosmann, P.1
Georgiev, O.2
Le Douarin, B.3
Bourquin, J.P.4
Schaffner, W.5
-
15
-
-
0029841744
-
A possible involvement of TIF1 alpha and TIF1 beta in the epigenetic control of transcription by nuclear receptors
-
452494, 8978696
-
Le Douarin B, Nielsen AL, Garnier JM, Ichinose H, Jeanmougin F, Losson R, Chambon P. A possible involvement of TIF1 alpha and TIF1 beta in the epigenetic control of transcription by nuclear receptors. Embo J 1996, 15(23):6701-6715. 452494, 8978696.
-
(1996)
Embo J
, vol.15
, Issue.23
, pp. 6701-6715
-
-
Le Douarin, B.1
Nielsen, A.L.2
Garnier, J.M.3
Ichinose, H.4
Jeanmougin, F.5
Losson, R.6
Chambon, P.7
-
16
-
-
0033013868
-
KAP-1 corepressor protein interacts and colocalizes with heterochromatic and euchromatic HP1 proteins: a potential role for Kruppel-associated box-zinc finger proteins in heterochromatin-mediated gene silencing
-
104396, 10330177
-
Ryan RF, Schultz DC, Ayyanathan K, Singh PB, Friedman JR, Fredericks WJ, Rauscher FJ. KAP-1 corepressor protein interacts and colocalizes with heterochromatic and euchromatic HP1 proteins: a potential role for Kruppel-associated box-zinc finger proteins in heterochromatin-mediated gene silencing. Mol Cell Biol 1999, 19(6):4366-4378. 104396, 10330177.
-
(1999)
Mol Cell Biol
, vol.19
, Issue.6
, pp. 4366-4378
-
-
Ryan, R.F.1
Schultz, D.C.2
Ayyanathan, K.3
Singh, P.B.4
Friedman, J.R.5
Fredericks, W.J.6
Rauscher, F.J.7
-
17
-
-
0034704078
-
A novel nuclear receptor corepressor complex, N-CoR, contains components of the mammalian SWI/SNF complex and the corepressor KAP-1
-
10.1074/jbc.M007864200, 11013263
-
Underhill C, Qutob MS, Yee SP, Torchia J. A novel nuclear receptor corepressor complex, N-CoR, contains components of the mammalian SWI/SNF complex and the corepressor KAP-1. J Biol Chem 2000, 275(51):40463-40470. 10.1074/jbc.M007864200, 11013263.
-
(2000)
J Biol Chem
, vol.275
, Issue.51
, pp. 40463-40470
-
-
Underhill, C.1
Qutob, M.S.2
Yee, S.P.3
Torchia, J.4
-
18
-
-
0034602922
-
Reconstitution of the KRAB-KAP-1 repressor complex: a model system for defining the molecular anatomy of RING-B box-coiled-coil domain-mediated protein-protein interactions
-
10.1006/jmbi.1999.3402, 10653693
-
Peng H, Begg GE, Schultz DC, Friedman JR, Jensen DE, Speicher DW, Rauscher FJ. Reconstitution of the KRAB-KAP-1 repressor complex: a model system for defining the molecular anatomy of RING-B box-coiled-coil domain-mediated protein-protein interactions. J Mol Biol 2000, 295(5):1139-1162. 10.1006/jmbi.1999.3402, 10653693.
-
(2000)
J Mol Biol
, vol.295
, Issue.5
, pp. 1139-1162
-
-
Peng, H.1
Begg, G.E.2
Schultz, D.C.3
Friedman, J.R.4
Jensen, D.E.5
Speicher, D.W.6
Rauscher, F.J.7
-
19
-
-
0035118229
-
Targeting histone deacetylase complexes via KRAB-zinc finger proteins: the PHD and bromodomains of KAP-1 form a cooperative unit that recruits a novel isoform of the Mi-2alpha subunit of NuRD
-
10.1101/gad.869501, 312636, 11230151
-
Schultz DC, Friedman JR, Rauscher FJ. Targeting histone deacetylase complexes via KRAB-zinc finger proteins: the PHD and bromodomains of KAP-1 form a cooperative unit that recruits a novel isoform of the Mi-2alpha subunit of NuRD. Genes Dev 2001, 15(4):428-443. 10.1101/gad.869501, 312636, 11230151.
-
(2001)
Genes Dev
, vol.15
, Issue.4
, pp. 428-443
-
-
Schultz, D.C.1
Friedman, J.R.2
Rauscher, F.J.3
-
20
-
-
0037089626
-
SETDB1: a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins
-
10.1101/gad.973302, 152359, 11959841
-
Schultz DC, Ayyanathan K, Negorev D, Maul GG, Rauscher FJ. SETDB1: a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins. Genes Dev 2002, 16(8):919-932. 10.1101/gad.973302, 152359, 11959841.
-
(2002)
Genes Dev
, vol.16
, Issue.8
, pp. 919-932
-
-
Schultz, D.C.1
Ayyanathan, K.2
Negorev, D.3
Maul, G.G.4
Rauscher, F.J.5
-
21
-
-
4444372922
-
Association of the transcriptional corepressor TIF1beta with heterochromatin protein 1 (HP1): an essential role for progression through differentiation
-
10.1101/gad.302904, 515292, 15342492
-
Cammas F, Herzog M, Lerouge T, Chambon P, Losson R. Association of the transcriptional corepressor TIF1beta with heterochromatin protein 1 (HP1): an essential role for progression through differentiation. Genes Dev 2004, 18(17):2147-2160. 10.1101/gad.302904, 515292, 15342492.
-
(2004)
Genes Dev
, vol.18
, Issue.17
, pp. 2147-2160
-
-
Cammas, F.1
Herzog, M.2
Lerouge, T.3
Chambon, P.4
Losson, R.5
-
22
-
-
36348930084
-
The Kruppel-associated box repressor domain can trigger de novo promoter methylation during mouse early embryogenesis
-
10.1074/jbc.M705898200, 17893143
-
Wiznerowicz M, Jakobsson J, Szulc J, Liao S, Quazzola A, Beermann F, Aebischer P, Trono D. The Kruppel-associated box repressor domain can trigger de novo promoter methylation during mouse early embryogenesis. J Biol Chem 2007, 282(47):34535-34541. 10.1074/jbc.M705898200, 17893143.
-
(2007)
J Biol Chem
, vol.282
, Issue.47
, pp. 34535-34541
-
-
Wiznerowicz, M.1
Jakobsson, J.2
Szulc, J.3
Liao, S.4
Quazzola, A.5
Beermann, F.6
Aebischer, P.7
Trono, D.8
-
23
-
-
0041624239
-
Regulated recruitment of HP1 to a euchromatic gene induces mitotically heritable, epigenetic gene silencing: a mammalian cell culture model of gene variegation
-
10.1101/gad.1102803, 196232, 12869583
-
Ayyanathan K, Lechner MS, Bell P, Maul GG, Schultz DC, Yamada Y, Tanaka K, Torigoe K, Rauscher FJ. Regulated recruitment of HP1 to a euchromatic gene induces mitotically heritable, epigenetic gene silencing: a mammalian cell culture model of gene variegation. Genes Dev 2003, 17(15):1855-1869. 10.1101/gad.1102803, 196232, 12869583.
-
(2003)
Genes Dev
, vol.17
, Issue.15
, pp. 1855-1869
-
-
Ayyanathan, K.1
Lechner, M.S.2
Bell, P.3
Maul, G.G.4
Schultz, D.C.5
Yamada, Y.6
Tanaka, K.7
Torigoe, K.8
Rauscher, F.J.9
-
24
-
-
33751007001
-
The KAP1 corepressor functions to coordinate the assembly of de novo HP1-demarcated microenvironments of heterochromatin required for KRAB zinc finger protein-mediated transcriptional repression
-
10.1128/MCB.00487-06, 1636786, 16954381
-
Sripathy SP, Stevens J, Schultz DC. The KAP1 corepressor functions to coordinate the assembly of de novo HP1-demarcated microenvironments of heterochromatin required for KRAB zinc finger protein-mediated transcriptional repression. Mol Cell Biol 2006, 26(22):8623-8638. 10.1128/MCB.00487-06, 1636786, 16954381.
-
(2006)
Mol Cell Biol
, vol.26
, Issue.22
, pp. 8623-8638
-
-
Sripathy, S.P.1
Stevens, J.2
Schultz, D.C.3
-
25
-
-
34347353316
-
Genome-wide analysis of KAP1 binding suggests autoregulation of KRAB-ZNFs
-
10.1371/journal.pgen.0030089, 1885280, 17542650
-
O'Geen H, Squazzo SL, Iyengar S, Blahnik K, Rinn JL, Chang HY, Green R, Farnham PJ. Genome-wide analysis of KAP1 binding suggests autoregulation of KRAB-ZNFs. PLoS Genet 2007, 3(6):e89. 10.1371/journal.pgen.0030089, 1885280, 17542650.
-
(2007)
PLoS Genet
, vol.3
, Issue.6
-
-
O'Geen, H.1
Squazzo, S.L.2
Iyengar, S.3
Blahnik, K.4
Rinn, J.L.5
Chang, H.Y.6
Green, R.7
Farnham, P.J.8
-
26
-
-
79955410721
-
Functional analysis of KAP1 genomic recruitment
-
Iyengar S, Ivanov AV, Jin VX, Rauscher FJ, Farnham PJ. Functional analysis of KAP1 genomic recruitment. Mol Cell Biol 2011,
-
(2011)
Mol Cell Biol
-
-
Iyengar, S.1
Ivanov, A.V.2
Jin, V.X.3
Rauscher, F.J.4
Farnham, P.J.5
-
27
-
-
67650096728
-
The HP1alpha-CAF1-SetDB1-containing complex provides H3K9me1 for Suv39-mediated K9me3 in pericentric heterochromatin
-
10.1038/embor.2009.90, 2727428, 19498464
-
Loyola A, Tagami H, Bonaldi T, Roche D, Quivy JP, Imhof A, Nakatani Y, Dent SY, Almouzni G. The HP1alpha-CAF1-SetDB1-containing complex provides H3K9me1 for Suv39-mediated K9me3 in pericentric heterochromatin. EMBO Rep 2009, 10(7):769-775. 10.1038/embor.2009.90, 2727428, 19498464.
-
(2009)
EMBO Rep
, vol.10
, Issue.7
, pp. 769-775
-
-
Loyola, A.1
Tagami, H.2
Bonaldi, T.3
Roche, D.4
Quivy, J.P.5
Imhof, A.6
Nakatani, Y.7
Dent, S.Y.8
Almouzni, G.9
-
28
-
-
77950421703
-
KRAB-zinc finger proteins and KAP1 can mediate long-range transcriptional repression through heterochromatin spreading
-
10.1371/journal.pgen.1000869, 2832679, 20221260
-
Groner AC, Meylan S, Ciuffi A, Zangger N, Ambrosini G, Denervaud N, Bucher P, Trono D. KRAB-zinc finger proteins and KAP1 can mediate long-range transcriptional repression through heterochromatin spreading. PLoS Genet 2010, 6(3):e1000869. 10.1371/journal.pgen.1000869, 2832679, 20221260.
-
(2010)
PLoS Genet
, vol.6
, Issue.3
-
-
Groner, A.C.1
Meylan, S.2
Ciuffi, A.3
Zangger, N.4
Ambrosini, G.5
Denervaud, N.6
Bucher, P.7
Trono, D.8
-
29
-
-
0028897720
-
Tetracycline-reversible silencing of eukaryotic promoters
-
230416, 7891684
-
Deuschle U, Meyer WK, Thiesen HJ. Tetracycline-reversible silencing of eukaryotic promoters. Mol Cell Biol 1995, 15(4):1907-1914. 230416, 7891684.
-
(1995)
Mol Cell Biol
, vol.15
, Issue.4
, pp. 1907-1914
-
-
Deuschle, U.1
Meyer, W.K.2
Thiesen, H.J.3
-
30
-
-
0030855387
-
Silencing of RNA polymerases II and III-dependent transcription by the KRAB protein domain of KOX1, a Kruppel-type zinc finger factor
-
10.1515/bchm.1997.378.7.669, 9278146
-
Moosmann P, Georgiev O, Thiesen HJ, Hagmann M, Schaffner W. Silencing of RNA polymerases II and III-dependent transcription by the KRAB protein domain of KOX1, a Kruppel-type zinc finger factor. Biol Chem 1997, 378(7):669-677. 10.1515/bchm.1997.378.7.669, 9278146.
-
(1997)
Biol Chem
, vol.378
, Issue.7
, pp. 669-677
-
-
Moosmann, P.1
Georgiev, O.2
Thiesen, H.J.3
Hagmann, M.4
Schaffner, W.5
-
31
-
-
0037162715
-
HIV-1 integration in the human genome favors active genes and local hotspots
-
10.1016/S0092-8674(02)00864-4, 12202041
-
Schroder AR, Shinn P, Chen H, Berry C, Ecker JR, Bushman F. HIV-1 integration in the human genome favors active genes and local hotspots. Cell 2002, 110(4):521-529. 10.1016/S0092-8674(02)00864-4, 12202041.
-
(2002)
Cell
, vol.110
, Issue.4
, pp. 521-529
-
-
Schroder, A.R.1
Shinn, P.2
Chen, H.3
Berry, C.4
Ecker, J.R.5
Bushman, F.6
-
32
-
-
19344375031
-
Retroviral DNA integration: ASLV, HIV, and MLV show distinct target site preferences
-
10.1371/journal.pbio.0020234, 509299, 15314653
-
Mitchell RS, Beitzel BF, Schroder AR, Shinn P, Chen H, Berry CC, Ecker JR, Bushman FD. Retroviral DNA integration: ASLV, HIV, and MLV show distinct target site preferences. PLoS Biol 2004, 2(8):E234. 10.1371/journal.pbio.0020234, 509299, 15314653.
-
(2004)
PLoS Biol
, vol.2
, Issue.8
-
-
Mitchell, R.S.1
Beitzel, B.F.2
Schroder, A.R.3
Shinn, P.4
Chen, H.5
Berry, C.C.6
Ecker, J.R.7
Bushman, F.D.8
-
33
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
1464427, 16056220
-
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen Z, Dewell SB, Du L, Fierro JM, Gomes XV, Godwin BC, He W, Helgesen S, Ho CH, Irzyk GP, Jando SC, Alenquer ML, Jarvie TP, Jirage KB, Kim JB, Knight JR, Lanza JR, Leamon JH, Lefkowitz SM, Lei M, Li J, Lohman KL, Lu H, Makhijani VB, McDade KE, McKenna MP, Myers EW, Nickerson E, Nobile JR, Plant R, Puc BP, Ronan MT, Roth GT, Sarkis GJ, Simons JF, Simpson JW, Srinivasan M, Tartaro KR, Tomasz A, Vogt KA, Volkmer GA, Wang SH, Wang Y, Weiner MP, Yu P, Begley RF, Rothberg JM. Genome sequencing in microfabricated high-density picolitre reactors. Nature 2005, 437(7057):376-380. 1464427, 16056220.
-
(2005)
Nature
, vol.437
, Issue.7057
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
Bemben, L.A.6
Berka, J.7
Braverman, M.S.8
Chen, Y.J.9
Chen, Z.10
Dewell, S.B.11
Du, L.12
Fierro, J.M.13
Gomes, X.V.14
Godwin, B.C.15
He, W.16
Helgesen, S.17
Ho, C.H.18
Irzyk, G.P.19
Jando, S.C.20
Alenquer, M.L.21
Jarvie, T.P.22
Jirage, K.B.23
Kim, J.B.24
Knight, J.R.25
Lanza, J.R.26
Leamon, J.H.27
Lefkowitz, S.M.28
Lei, M.29
Li, J.30
Lohman, K.L.31
Lu, H.32
Makhijani, V.B.33
McDade, K.E.34
McKenna, M.P.35
Myers, E.W.36
Nickerson, E.37
Nobile, J.R.38
Plant, R.39
Puc, B.P.40
Ronan, M.T.41
Roth, G.T.42
Sarkis, G.J.43
Simons, J.F.44
Simpson, J.W.45
Srinivasan, M.46
Tartaro, K.R.47
Tomasz, A.48
Vogt, K.A.49
Volkmer, G.A.50
Wang, S.H.51
Wang, Y.52
Weiner, M.P.53
Yu, P.54
Begley, R.F.55
Rothberg, J.M.56
more..
-
34
-
-
34547635063
-
HIV integration site selection: analysis by massively parallel pyrosequencing reveals association with epigenetic modifications
-
10.1101/gr.6286907, 1933515, 17545577
-
Wang GP, Ciuffi A, Leipzig J, Berry CC, Bushman FD. HIV integration site selection: analysis by massively parallel pyrosequencing reveals association with epigenetic modifications. Genome Res 2007, 17(8):1186-1194. 10.1101/gr.6286907, 1933515, 17545577.
-
(2007)
Genome Res
, vol.17
, Issue.8
, pp. 1186-1194
-
-
Wang, G.P.1
Ciuffi, A.2
Leipzig, J.3
Berry, C.C.4
Bushman, F.D.5
-
35
-
-
39349104728
-
Indexing strategies for rapid searches of short words in genome sequences
-
10.1371/journal.pone.0000579, 1894650, 17593978
-
Iseli C, Ambrosini G, Bucher P, Jongeneel CV. Indexing strategies for rapid searches of short words in genome sequences. PLoS One 2007, 2(6):e579. 10.1371/journal.pone.0000579, 1894650, 17593978.
-
(2007)
PLoS One
, vol.2
, Issue.6
-
-
Iseli, C.1
Ambrosini, G.2
Bucher, P.3
Jongeneel, C.V.4
-
36
-
-
33745684269
-
Retroviral DNA integration: viral and cellular determinants of target-site selection
-
10.1371/journal.ppat.0020060, 1480600, 16789841
-
Lewinski MK, Yamashita M, Emerman M, Ciuffi A, Marshall H, Crawford G, Collins F, Shinn P, Leipzig J, Hannenhalli S, Berry CC, Ecker JR, Bushman FD. Retroviral DNA integration: viral and cellular determinants of target-site selection. PLoS Pathog 2006, 2(6):e60. 10.1371/journal.ppat.0020060, 1480600, 16789841.
-
(2006)
PLoS Pathog
, vol.2
, Issue.6
-
-
Lewinski, M.K.1
Yamashita, M.2
Emerman, M.3
Ciuffi, A.4
Marshall, H.5
Crawford, G.6
Collins, F.7
Shinn, P.8
Leipzig, J.9
Hannenhalli, S.10
Berry, C.C.11
Ecker, J.R.12
Bushman, F.D.13
-
37
-
-
15244346492
-
Promoter trapping reveals significant differences in integration site selection between MLV and HIV vectors in primary hematopoietic cells
-
10.1182/blood-2004-03-0798, 15542582
-
De Palma M, Montini E, Santoni de Sio FR, Benedicenti F, Gentile A, Medico E, Naldini L. Promoter trapping reveals significant differences in integration site selection between MLV and HIV vectors in primary hematopoietic cells. Blood 2005, 105(6):2307-2315. 10.1182/blood-2004-03-0798, 15542582.
-
(2005)
Blood
, vol.105
, Issue.6
, pp. 2307-2315
-
-
De Palma, M.1
Montini, E.2
Santoni de Sio, F.R.3
Benedicenti, F.4
Gentile, A.5
Medico, E.6
Naldini, L.7
-
38
-
-
33751418954
-
Selection of target sites for mobile DNA integration in the human genome
-
10.1371/journal.pcbi.0020157, 1664696, 17166054
-
Berry C, Hannenhalli S, Leipzig J, Bushman FD. Selection of target sites for mobile DNA integration in the human genome. PLoS Comput Biol 2006, 2(11):e157. 10.1371/journal.pcbi.0020157, 1664696, 17166054.
-
(2006)
PLoS Comput Biol
, vol.2
, Issue.11
-
-
Berry, C.1
Hannenhalli, S.2
Leipzig, J.3
Bushman, F.D.4
-
39
-
-
60149095014
-
Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains
-
2612964, 19056695
-
Cuddapah S, Jothi R, Schones DE, Roh TY, Cui K, Zhao K. Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains. Genome Res 2009, 19(1):24-32. 2612964, 19056695.
-
(2009)
Genome Res
, vol.19
, Issue.1
, pp. 24-32
-
-
Cuddapah, S.1
Jothi, R.2
Schones, D.E.3
Roh, T.Y.4
Cui, K.5
Zhao, K.6
-
40
-
-
68149150830
-
H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions
-
10.1038/ng.409, 3125718, 19633671
-
Jin C, Zang C, Wei G, Cui K, Peng W, Zhao K, Felsenfeld G. H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions. Nat Genet 2009, 41(8):941-945. 10.1038/ng.409, 3125718, 19633671.
-
(2009)
Nat Genet
, vol.41
, Issue.8
, pp. 941-945
-
-
Jin, C.1
Zang, C.2
Wei, G.3
Cui, K.4
Peng, W.5
Zhao, K.6
Felsenfeld, G.7
-
41
-
-
69449102464
-
Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes
-
10.1016/j.cell.2009.06.049, 2750862, 19698979
-
Wang Z, Zang C, Cui K, Schones DE, Barski A, Peng W, Zhao K. Genome-wide mapping of HATs and HDACs reveals distinct functions in active and inactive genes. Cell 2009, 138(5):1019-1031. 10.1016/j.cell.2009.06.049, 2750862, 19698979.
-
(2009)
Cell
, vol.138
, Issue.5
, pp. 1019-1031
-
-
Wang, Z.1
Zang, C.2
Cui, K.3
Schones, D.E.4
Barski, A.5
Peng, W.6
Zhao, K.7
-
42
-
-
0036467996
-
Insulators: many functions, many mechanisms
-
10.1101/gad.954702, 11825869
-
West AG, Gaszner M, Felsenfeld G. Insulators: many functions, many mechanisms. Genes Dev 2002, 16(3):271-288. 10.1101/gad.954702, 11825869.
-
(2002)
Genes Dev
, vol.16
, Issue.3
, pp. 271-288
-
-
West, A.G.1
Gaszner, M.2
Felsenfeld, G.3
-
43
-
-
33747453473
-
Insulators: exploiting transcriptional and epigenetic mechanisms
-
10.1038/nrg1925, 16909129
-
Gaszner M, Felsenfeld G. Insulators: exploiting transcriptional and epigenetic mechanisms. Nat Rev Genet 2006, 7(9):703-713. 10.1038/nrg1925, 16909129.
-
(2006)
Nat Rev Genet
, vol.7
, Issue.9
, pp. 703-713
-
-
Gaszner, M.1
Felsenfeld, G.2
-
44
-
-
0037076316
-
Position-effect protection and enhancer blocking by the chicken beta-globin insulator are separable activities
-
10.1073/pnas.102179399, 124498, 12011446
-
Recillas-Targa F, Pikaart MJ, Burgess-Beusse B, Bell AC, Litt MD, West AG, Gaszner M, Felsenfeld G. Position-effect protection and enhancer blocking by the chicken beta-globin insulator are separable activities. Proc Natl Acad Sci USA 2002, 99(10):6883-6888. 10.1073/pnas.102179399, 124498, 12011446.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, Issue.10
, pp. 6883-6888
-
-
Recillas-Targa, F.1
Pikaart, M.J.2
Burgess-Beusse, B.3
Bell, A.C.4
Litt, M.D.5
West, A.G.6
Gaszner, M.7
Felsenfeld, G.8
-
45
-
-
33644850958
-
Heterochromatin protein 1: don't judge the book by its cover!
-
10.1016/j.gde.2006.02.013, 16503133
-
Hediger F, Gasser SM. Heterochromatin protein 1: don't judge the book by its cover!. Curr Opin Genet Dev 2006, 16(2):143-150. 10.1016/j.gde.2006.02.013, 16503133.
-
(2006)
Curr Opin Genet Dev
, vol.16
, Issue.2
, pp. 143-150
-
-
Hediger, F.1
Gasser, S.M.2
-
46
-
-
79951874562
-
Characterization of the contradictory chromatin signatures at the 3' exons of zinc finger genes
-
10.1371/journal.pone.0017121, 3039671, 21347206
-
Blahnik KR, Dou L, Echipare L, Iyengar S, O'Geen H, Sanchez E, Zhao Y, Marra MA, Hirst M, Costello JF, Korf I, Farnham PJ. Characterization of the contradictory chromatin signatures at the 3' exons of zinc finger genes. PLoS One 2011, 6(2):e17121. 10.1371/journal.pone.0017121, 3039671, 21347206.
-
(2011)
PLoS One
, vol.6
, Issue.2
-
-
Blahnik, K.R.1
Dou, L.2
Echipare, L.3
Iyengar, S.4
O'Geen, H.5
Sanchez, E.6
Zhao, Y.7
Marra, M.A.8
Hirst, M.9
Costello, J.F.10
Korf, I.11
Farnham, P.J.12
-
47
-
-
78650081714
-
ZNF274 recruits the histone methyltransferase SETDB1 to the 3' ends of ZNF genes
-
10.1371/journal.pone.0015082, 2999557, 21170338
-
Frietze S, O'Geen H, Blahnik KR, Jin VX, Farnham PJ. ZNF274 recruits the histone methyltransferase SETDB1 to the 3' ends of ZNF genes. PLoS One 2010, 5(12):e15082. 10.1371/journal.pone.0015082, 2999557, 21170338.
-
(2010)
PLoS One
, vol.5
, Issue.12
-
-
Frietze, S.1
O'Geen, H.2
Blahnik, K.R.3
Jin, V.X.4
Farnham, P.J.5
-
48
-
-
77949432014
-
PHF8, a gene associated with cleft lip/palate and mental retardation, encodes for an Nepsilon-dimethyl lysine demethylase
-
10.1093/hmg/ddp480, 19843542
-
Loenarz C, Ge W, Coleman ML, Rose NR, Cooper CD, Klose RJ, Ratcliffe PJ, Schofield CJ. PHF8, a gene associated with cleft lip/palate and mental retardation, encodes for an Nepsilon-dimethyl lysine demethylase. Hum Mol Genet 2010, 19(2):217-222. 10.1093/hmg/ddp480, 19843542.
-
(2010)
Hum Mol Genet
, vol.19
, Issue.2
, pp. 217-222
-
-
Loenarz, C.1
Ge, W.2
Coleman, M.L.3
Rose, N.R.4
Cooper, C.D.5
Klose, R.J.6
Ratcliffe, P.J.7
Schofield, C.J.8
-
49
-
-
77950893589
-
A functional link between the histone demethylase PHF8 and the transcription factor ZNF711 in X-linked mental retardation
-
10.1016/j.molcel.2010.03.002, 2989439, 20346720
-
Kleine-Kohlbrecher D, Christensen J, Vandamme J, Abarrategui I, Bak M, Tommerup N, Shi X, Gozani O, Rappsilber J, Salcini AE, Helin K. A functional link between the histone demethylase PHF8 and the transcription factor ZNF711 in X-linked mental retardation. Mol Cell 2010, 38(2):165-178. 10.1016/j.molcel.2010.03.002, 2989439, 20346720.
-
(2010)
Mol Cell
, vol.38
, Issue.2
, pp. 165-178
-
-
Kleine-Kohlbrecher, D.1
Christensen, J.2
Vandamme, J.3
Abarrategui, I.4
Bak, M.5
Tommerup, N.6
Shi, X.7
Gozani, O.8
Rappsilber, J.9
Salcini, A.E.10
Helin, K.11
-
50
-
-
48349092985
-
Hypomethylation of multiple imprinted loci in individuals with transient neonatal diabetes is associated with mutations in ZFP57
-
10.1038/ng.187, 18622393
-
Mackay DJ, Callaway JL, Marks SM, White HE, Acerini CL, Boonen SE, Dayanikli P, Firth HV, Goodship JA, Haemers AP, Hahnemann JM, Kordonouri O, Masoud AF, Oestergaard E, Storr J, Ellard S, Hattersley AT, Robinson DO, Temple IK. Hypomethylation of multiple imprinted loci in individuals with transient neonatal diabetes is associated with mutations in ZFP57. Nat Genet 2008, 40(8):949-951. 10.1038/ng.187, 18622393.
-
(2008)
Nat Genet
, vol.40
, Issue.8
, pp. 949-951
-
-
Mackay, D.J.1
Callaway, J.L.2
Marks, S.M.3
White, H.E.4
Acerini, C.L.5
Boonen, S.E.6
Dayanikli, P.7
Firth, H.V.8
Goodship, J.A.9
Haemers, A.P.10
Hahnemann, J.M.11
Kordonouri, O.12
Masoud, A.F.13
Oestergaard, E.14
Storr, J.15
Ellard, S.16
Hattersley, A.T.17
Robinson, D.O.18
Temple, I.K.19
-
51
-
-
0025204569
-
Position-effect variegation after 60 years
-
Henikoff S. Position-effect variegation after 60 years. Trends Genet 1990, 6(12):422-426.
-
(1990)
Trends Genet
, vol.6
, Issue.12
, pp. 422-426
-
-
Henikoff, S.1
-
52
-
-
0043210428
-
Conditional suppression of cellular genes: lentivirus vector-mediated drug-inducible RNA interference
-
10.1128/JVI.77.16.8957-8951.2003, 167245, 12885912
-
Wiznerowicz M, Trono D. Conditional suppression of cellular genes: lentivirus vector-mediated drug-inducible RNA interference. J Virol 2003, 77(16):8957-8961. 10.1128/JVI.77.16.8957-8951.2003, 167245, 12885912.
-
(2003)
J Virol
, vol.77
, Issue.16
, pp. 8957-8961
-
-
Wiznerowicz, M.1
Trono, D.2
-
53
-
-
0037043699
-
Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein
-
10.1038/nature00939, 12167863
-
Sheehy AM, Gaddis NC, Choi JD, Malim MH. Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein. Nature 2002, 418(6898):646-650. 10.1038/nature00939, 12167863.
-
(2002)
Nature
, vol.418
, Issue.6898
, pp. 646-650
-
-
Sheehy, A.M.1
Gaddis, N.C.2
Choi, J.D.3
Malim, M.H.4
-
54
-
-
0034604354
-
Mitotic phosphorylation of histone H3 is governed by Ipl1/aurora kinase and Glc7/PP1 phosphatase in budding yeast and nematodes
-
10.1016/S0092-8674(00)00034-9, 10975519
-
Hsu JY, Sun ZW, Li X, Reuben M, Tatchell K, Bishop DK, Grushcow JM, Brame CJ, Caldwell JA, Hunt DF, Lin R, Smith MM, Allis CD. Mitotic phosphorylation of histone H3 is governed by Ipl1/aurora kinase and Glc7/PP1 phosphatase in budding yeast and nematodes. Cell 2000, 102(3):279-291. 10.1016/S0092-8674(00)00034-9, 10975519.
-
(2000)
Cell
, vol.102
, Issue.3
, pp. 279-291
-
-
Hsu, J.Y.1
Sun, Z.W.2
Li, X.3
Reuben, M.4
Tatchell, K.5
Bishop, D.K.6
Grushcow, J.M.7
Brame, C.J.8
Caldwell, J.A.9
Hunt, D.F.10
Lin, R.11
Smith, M.M.12
Allis, C.D.13
-
55
-
-
0023710206
-
Comparing the areas under two or more correlated receiver operating characteristic curves: a nonparametric approach
-
10.2307/2531595, 3203132
-
DeLong ER, DeLong DM, Clarke-Pearson DL. Comparing the areas under two or more correlated receiver operating characteristic curves: a nonparametric approach. Biometrics 1988, 44(3):837-845. 10.2307/2531595, 3203132.
-
(1988)
Biometrics
, vol.44
, Issue.3
, pp. 837-845
-
-
DeLong, E.R.1
DeLong, D.M.2
Clarke-Pearson, D.L.3
-
56
-
-
1542405872
-
Pharmacogenomic identification of targets for adjuvant therapy with the topoisomerase poison camptothecin
-
10.1158/0008-5472.CAN-03-2029, 15026349
-
Carson JP, Zhang N, Frampton GM, Gerry NP, Lenburg ME, Christman MF. Pharmacogenomic identification of targets for adjuvant therapy with the topoisomerase poison camptothecin. Cancer Res 2004, 64(6):2096-2104. 10.1158/0008-5472.CAN-03-2029, 15026349.
-
(2004)
Cancer Res
, vol.64
, Issue.6
, pp. 2096-2104
-
-
Carson, J.P.1
Zhang, N.2
Frampton, G.M.3
Gerry, N.P.4
Lenburg, M.E.5
Christman, M.F.6
-
57
-
-
70350770506
-
Integration of retroviral vectors induces minor changes in the transcriptional activity of T cells from ADA-SCID patients treated with gene therapy
-
10.1182/blood-2009-02-202085, 19652199
-
Cassani B, Montini E, Maruggi G, Ambrosi A, Mirolo M, Selleri S, Biral E, Frugnoli I, Hernandez-Trujillo V, Di Serio C, Roncarolo MG, Naldini L, Mavilio F, Aiuti A. Integration of retroviral vectors induces minor changes in the transcriptional activity of T cells from ADA-SCID patients treated with gene therapy. Blood 2009, 114(17):3546-3556. 10.1182/blood-2009-02-202085, 19652199.
-
(2009)
Blood
, vol.114
, Issue.17
, pp. 3546-3556
-
-
Cassani, B.1
Montini, E.2
Maruggi, G.3
Ambrosi, A.4
Mirolo, M.5
Selleri, S.6
Biral, E.7
Frugnoli, I.8
Hernandez-Trujillo, V.9
Di Serio, C.10
Roncarolo, M.G.11
Naldini, L.12
Mavilio, F.13
Aiuti, A.14
-
58
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
10.1093/biostatistics/4.2.249, 12925520
-
Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 2003, 4(2):249-264. 10.1093/biostatistics/4.2.249, 12925520.
-
(2003)
Biostatistics
, vol.4
, Issue.2
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
Speed, T.P.7
|