Simulation study on the translocation of a partially charged polymer through a nanopore

Journal of Chemical Physics

Volumn 137, Issue 3, 2012, Pages

  Qian, Hong ^a   Sun, Li Zhen ^a   Luo, Meng Bo ^a,b  

^a ZHEJIANG UNIVERSITY   (China)

^b ZHEJIANG UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CHARGED MONOMERS; CHARGED POLYMERS; DRIVING FORCES; DYNAMIC MONTE CARLO METHOD; ELECTRICAL FIELD; FIRST PASSAGE TIME; FREE ENERGY LANDSCAPE; MEAN FIRST PASSAGE TIME; POLYMER LENGTH; SIMPLE-CUBIC LATTICES; SIMULATION STUDIES; THEORETICAL RESULT; TRANSLOCATION PROCESS; TWO TIME SCALE;

MONOMERS; MONTE CARLO METHODS; NANOPORES;

POLYMERS;

POLYMER;

ARTICLE; CHEMICAL MODEL; CHEMISTRY; COMPUTER SIMULATION; ELECTRICITY; MONTE CARLO METHOD; MOTION; NANOPORE; THERMODYNAMICS; ULTRASTRUCTURE;

COMPUTER SIMULATION; ELECTRICITY; MODELS, CHEMICAL; MONTE CARLO METHOD; MOTION; NANOPORES; POLYMERS; THERMODYNAMICS;

EID: 84864200203     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.4737929     Document Type: Article

References (48)

1. J. Darnell, H. Lodish, and D. Baltimore, Molecular Cell Biology (Scientific American Books, New York, 1986).
2. S. J. Singer, Annu. Rev. Cell Biol. 6, 247 (1990). 10.1146/annurev.cb.06. 110190.001335
3. D.-C. Chang, Guide to Electroporation and Electrofusion (Academic, New York, 1992).
4. J. J. Kasianowicz, E. Brandin, D. Branton, and D. W. Deamer, Proc. Natl. Acad. Sci. U.S.A. 93, 13770 (1996). 10.1073/pnas.93.24.13770
5. G. Schatz and B. Dobberstein, Science 271, 1519 (1996). 10.1126/science.271.5255.1519
6. J. Han, S. W. Turner, and H. G. Craighead, Phys. Rev. Lett. 83, 1688 (1999). 10.1103/PhysRevLett.83.1688
7. C. T. A. Wong and M. Muthukumar, J. Chem. Phys. 133, 045101 (2010). 10.1063/1.3464333
8. S. Kumar and Y. K. Agrawal, Nanosci. Nanotechnol.-Asia 1, 2 (2011). 10.2174/2210682011101010002
9. S. E. Henrickson, M. Misakian, B. Robertson and J. J. Kasianowicz, Phys. Rev. Lett. 85, 3057 (2000). 10.1103/PhysRevLett.85.3057
10. A. Meller, J. Phys.: Condens. Matter 15, 581 (2003). 10.1088/0953-8984/ 15/17/202
11. A. Mattozzi, B. Neway, M. S. Hedenqvist, and U. W. Gedde, Polymer 46, 929 (2005). 10.1016/j.polymer.2004.11.073
12. A. Meller, L. Nivon, and D. Branton, Phys. Rev. Lett. 86, 3435 (2001). 10.1103/PhysRevLett.86.3435
13. A. J. Storm, C. Storm, J. H. Chen, H. Zandbergen, J. F. Joanny, and C. Dekker, Nano Lett. 5, 1193 (2005). 10.1021/nl048030d
14. W. Sung and P. J. Park, Phys. Rev. Lett. 77, 783 (1996). 10.1103/PhysRevLett.77.783
15. M. Muthukumar, J. Chem. Phys. 111, 10371 (1999). 10.1063/1.480386
16. R. E. Boehm, Macromolecules 32, 7645 (1999). 10.1021/ma9812938
17. K. L. Sebastian and A. K. R. Paul, Phys. Rev. E 62, 927 (2000). 10.1103/PhysRevE.62.927
18. P. Tian and G. D. Smith, J. Chem. Phys. 119, 11475 (2003). 10.1063/1.1621614
19. M. Muthukumar, J. Chem. Phys. 118, 5174 (2003). 10.1063/1.1553753
20. E. Slonkina and A. B. Kolomeisky, J. Chem. Phys. 118, 7112 (2003). 10.1063/1.1560932
21. M. Muthukumar, Phys. Rev. Lett. 86, 3188 (2001). 10.1103/PhysRevLett.86. 3188
22. S. S. Chern, A. E. Cardenas, and R. D. Coalson, J. Chem. Phys. 115, 7772 (2001). 10.1063/1.1392367
23. K. Luo, T. Ala-Nissila and S. C. Ying, J. Chem. Phys. 124, 034714 (2006). 10.1063/1.2161189
24. I. Huopaniemi, K. Luo, T. Ala-Nissila, and S. C. Ying, J. Chem. Phys. 125, 124901 (2006). 10.1063/1.2357118
25. K. Luo, T. Ala-Nissila, S.-C. Ying, and A. Bhattacharya, Phys. Rev. Lett. 99, 148102 (2007). 10.1103/PhysRevLett.99.148102
26. M. B. Luo, Polymer 48, 7679 (2007). 10.1016/j.polymer.2007.10.041
27. M. G. Gauthier and G. W. Slater, J. Chem. Phys. 128, 175103 (2008). 10.1063/1.2912069
28. D. Panja, G. T. Barkema, and R. C. Ball, J. Phys.: Condens. Matter 20, 075101 (2008). 10.1088/0953-8984/20/7/075101
29. D. Panja and G. T. Barkema, J. Chem. Phys. 132, 014902 (2010). 10.1063/1.3281641
30. A. Milchev, J. Phys.: Condens. Matter. 23, 103101 (2011). 10.1088/0953-8984/23/10/103101
31. Y. Kantor and M. Kardar, Phys. Rev. E 69, 021806 (2004). 10.1103/PhysRevE.69.021806
32. S. Alapati, D. V. Fernandes, and Y. K. Suh, J. Chem. Phys. 135, 055103 (2011). 10.1063/1.3622490
33. T. Sakaue, Phys. Rev. E 76, 021803 (2007). 10.1103/PhysRevE.76.021803
34. T. Sakaue, Phys. Rev. E 81, 041808 (2010). 10.1103/PhysRevE.81.041808
35. J. L. A. Dubbeldam, V. G. Rostiashvili, A. Milchev, and T. A. Vilgis, Phys. Rev. E 85, 041801 (2012). 10.1103/PhysRevE.85.041801
36. K. Luo, T. Ala-Nissila, S.-C. Ying, and A. Bhattacharya, Phys. Rev. Lett. 100, 058101 (2008). 10.1103/PhysRevLett.100.058101
37. A. Mohan, A. B. Kolomeisky, and M. Pasquali, J. Chem. Phys. 128, 125104 (2008). 10.1063/1.2868777
38. L. Z. Sun, W. P. Cao, and M. B. Luo, Phys. Chem. Chem. Phys. 12, 13318 (2010). 10.1039/c004265j
39. I. Carmesin and K. Kremer, Macromolecules 21, 2819 (1988). 10.1021/ma00187a030
40. P. Y. Lai, Phys. Rev. E 49, 5420 (1994). 10.1103/PhysRevE.49.5420
41. A. Gopinathan and Y. W. Kim, Phys. Rev. Lett. 99, 228106 (2007). 10.1103/PhysRevLett.99.228106
42. S. G. Whittington, J. Chem. Phys. 63, 779 (1975). 10.1063/1.431357
43. M. N. Barber, A. J. Guttmann, K. M. Middlemiss, G. M. Torrie, and S. G. Whittington, J. Phys. A 11, 1833 (1978). 10.1088/0305-4470/11/9/017
44. J. K. Wolterink, G. T. Barkema, and D. Panja, Phys. Rev. Lett. 96, 208301 (2006). 10.1103/PhysRevLett.96.208301
45. J. L. A. Dubbeldam, A. Milchev, V. G. Rostiashvili, and T. A. Vilgis, Phys. Rev. E 76, 010801R (2007). 10.1103/PhysRevE.76.010801
46. J. L. A. Dubbeldam, A. Milchev, V. G. Rostiashvili, and T. A. Vilgis, EPL 79, 18002 (2007). 10.1209/0295-5075/79/18002
47. K. Luo, S. T. T. Ollila, I. Huopaniemi, T. Ala-Nissila, P. Pomorski, M. Karttunen, S.-C. Ying, and A. Bhattacharya, Phys. Rev. E 78, 050901(R) (2008). 10.1103/PhysRevE.78.050901
48. V. V. Lehtola, R. P. Linna, and K. Kaski, Phys. Rev. E 81, 031803 (2010). 10.1103/PhysRevE.81.031803