Characterisation of a natural variant of the -butyrolactone signalling receptor

BMC Research Notes

Volumn 5, Issue , 2012, Pages

  Gottelt, Marco ^a,b   Hesketh, Andrew ^c,d   Bunet, Robert ^e   Puri, Pranav ^a   Takano, Eriko ^a  

^a UNIVERSITY OF GRONINGEN   (Netherlands)

^b Life Technologies   (Germany)

^c JOHN INNES CENTRE   (United Kingdom)

^d New Building ^*  (United Kingdom)

^e UNIVERSITÉ DE TOULON   (France)

Author keywords

Antibiotic production; Gamma butyrolactone receptor; Gene regulation; M600; ScbR; Streptomyces

Indexed keywords

STREPTOMYCES; STREPTOMYCES COELICOLOR;

4 AMINOBUTYRIC ACID A RECEPTOR; 4 BUTYROLACTONE RECEPTOR; 4-BUTYROLACTONE RECEPTOR; AMINO ACID; ANTIINFECTIVE AGENT; BACTERIAL DNA; BACTERIAL PROTEIN; CHYMOTRYPSIN; KANAMYCIN;

AMINO ACID SEQUENCE; ARTICLE; BIOSYNTHESIS; CHEMISTRY; DRUG EFFECT; ESCHERICHIA COLI; GEL MOBILITY SHIFT ASSAY; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; GENETICS; GROWTH, DEVELOPMENT AND AGING; MASS SPECTROMETRY; METABOLISM; MOLECULAR GENETICS; MUTATION; NUCLEOTIDE SEQUENCE; POINT MUTATION; PROMOTER REGION; PROTEIN BINDING; PROTEIN TERTIARY STRUCTURE; REPRODUCIBILITY; SEQUENCE ALIGNMENT; SIGNAL TRANSDUCTION; STREPTOMYCES COELICOLOR; TWO DIMENSIONAL GEL ELECTROPHORESIS;

AMINO ACID SEQUENCE; AMINO ACIDS; ANTI-BACTERIAL AGENTS; BACTERIAL PROTEINS; BASE SEQUENCE; CHYMOTRYPSIN; DNA, BACTERIAL; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; ELECTROPHORETIC MOBILITY SHIFT ASSAY; ESCHERICHIA COLI; GENE EXPRESSION REGULATION, BACTERIAL; KANAMYCIN; MOLECULAR SEQUENCE DATA; MUTATION; POINT MUTATION; PROMOTER REGIONS, GENETIC; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; RECEPTORS, GABA-A; REPRODUCIBILITY OF RESULTS; SEQUENCE ALIGNMENT; SIGNAL TRANSDUCTION; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; STREPTOMYCES COELICOLOR; TRANSCRIPTION, GENETIC;

EID: 84864187544     PISSN: None     EISSN: 17560500     Source Type: Journal    
DOI: 10.1186/1756-0500-5-379     Document Type: Article

References (33)

1. Actinomycete development, antibiotic production and phylogeny: questions and challanges. Champness W, Prokaryotic Development ASM Press, Washington, DC, USA, Brun YV, Skimkets LJ, 2000 11 31
2. Research on antibiotic screening in Japan over the ILastdecade: A producing microorganism approach. Miyadoh S, Actinomycetologica 1993 7 100 106 10.3209/saj.7-100
3. Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2). Bentley SD, Chater KF, Cerdeno-Tarraga AM, Challis GL, Thomson NR, James KD, Harris DE, Quail MA, Kieser H, Harper D, Bateman A, Brown S, Chandra G, Chen CW, Collins M, Cronin A, Fraser A, Goble A, Hidalgo J, Hornsby T, Howarth S, Huang CH, Kieser T, Larke L, Murphy L, Oliver K, O'Neil S, Rabbinowitsch E, Rajandream MA, Rutherford K, Rutter S, Seeger K, Saunders D, Sharp S, Squares R, Squares S, Taylor K, Warren T, Wietzorrek A, Woodward J, Barrell BG, Parkhill J, Hopwood DA, Nature 2002 417 141 147 10.1038/417141a 12000953 (Pubitemid 34506788)
4. Genome plasticity in Streptomyces: identification of 1 Mb TIRs in the S. coelicolor A3(2) chromosome. Weaver D, Karoonuthaisiri N, Tsai HH, Huang CH, Ho ML, Gai S, Patel KG, Huang J, Cohen SN, Hopwood DA, Chen CW, Kao CM, Mol Microbiol 2004 51 1535 1550 10.1111/j.1365-2958.2003.03920.x 15009883 (Pubitemid 38406530)
5. Gamma-butyrolactones: Streptomyces signalling molecules regulating antibiotic production and differentiation. Takano E, CurrOpin Microbiol 2006 9 287 294 (Pubitemid 43817617)
6. Regulation of secondary metabolism and cell differentiation in Streptomyces: A-factor as a microbial hormone and the AfsR protein as a component of a two-component regulatory system. Horinouchi S, Beppu T, Gene 1992 115 167 172 10.1016/0378-1119(92)90555-4 1612432
7. A microbial hormone, A-factor, as a master switch for morphological differentiation and secondary metabolism inStreptomyces griseus. Horinouchi S, Front Biosci 2002 7 2045 d2057 10.2741/horinouc 12165483
8. Purification and structural determination of SCB1, a gamma-butyrolactone that elicits antibiotic production in Streptomyces coelicolor A3(2). Takano E, Nihira T, Hara Y, Jones JJ, Gershater CJ, Yamada Y, Bibb M, J BiolChem 2000 275 11010 11016 (Pubitemid 30212740)
9. A complex role for the gamma-butyrolactone SCB1 in regulating antibiotic production in Streptomyces coelicolor A3(2). Takano E, Chakraburtty R, Nihira T, Yamada Y, Bibb MJ, MolMicrobiol 2001 41 1015 1028 (Pubitemid 36124699)
10. A bacterial hormone (the SCB1) directly controls the expression of a pathway-specific regulatory gene in the cryptic Type I polyketide biosynthetic gene cluster ofStreptomyces coelicolor. Takano E, Kinoshita H, Mersinias V, Bucca G, Hotchkiss G, Nihira T, Smith CP, Bibb M, Wohlleben W, Chater K, MolMicrobiol 2005 56 465 479 (Pubitemid 40516784)
11. A cryptic Type I polyketide synthase (cpk) gene cluster inStreptomyces coelicolor A3(2). Pawlik K, Kotowska M, Chater KF, Kuczek K, Takano E, Arch Microbiol 2007 187 87 99 10.1007/s00203-006-0176-7 17009021 (Pubitemid 46197385)
12. Deletion of a regulatory gene within the cpk gene cluster reveals novel antibacterial activity inStreptomyces coelicolor A3(2). Gottelt M, Kol S, Gomez-Escribano JP, Bibb M, Takano E, Microbiology 2010 156 2343 2353 10.1099/mic.0.038281-0 20447997
13. The TetR family of transcriptional repressors. Ramos JL, Martinez-Bueno M, Molina-Henares AJ, Teran W, Watanabe K, Zhang X, Gallegos MT, Brennan R, Tobes R, Microbiol Mol Biol Rev 2005 69 326 356 10.1128/MMBR.69.2.326-356.2005 15944459 (Pubitemid 40847943)
14. Crystal structure of a gamma-butyrolactoneautoregulator receptor protein inStreptomyces coelicolor A3(2). Natsume R, Ohnishi Y, Senda T, Horinouchi S, J MolBiol 2004 336 409 419 (Pubitemid 38147636)
15. Identification of tryptophan oxidation products in bovine alpha-crystallin. Finley EL, Dillon J, Crouch RK, Schey KL, Protein Sci 1998 7 2391 2397 10.1002/pro.5560071116 9828005 (Pubitemid 28506955)
16. Sambrook J, Russell DW, Molecular cloning: a laboratory manual Cold Spring Harbor Laboratory Press, New York 2001
17. Complex organization of the Streptomyces avermitilis genes encoding the avermectin polyketide synthase. MacNeil DJ, Occi JL, Gewain KM, MacNeil T, Gibbons PH, Ruby CL, Danis SJ, Gene 1992 115 119 125 10.1016/0378-1119(92)90549- 5 1612425
18. Kieser T, Bibb MJ, Buttner MJ, Chater KF, Hopwood DA, Practical Streptomyces Genetics John Innes Foundation, Norwich, United Kingdom 2000
19. Characterization of a new ScbR-like -butyrolactone binding regulator (SlbR) in Streptomyces coelicolor. Yang YH, Song E, Kim JN, Lee BR, Kim EJ, Park SH, Kim WS, Park HY, Jeon JM, Rajesh T, Kim YG, Kim BG, ApplMicrobiol Biotechnol 2012 10.1007/s00253-011-3803-4
20. The ppGppsynthetase gene (relA) ofStreptomyces coelicolor A3(2) plays a conditional role in antibiotic production and morphological differentiation. Chakraburtty R, Bibb M, J Bacteriol 1997 179 5854 5861 9294445 (Pubitemid 27398288)
21. Analysis of two additional signaling molecules inStreptomyces coelicolorand the development of a butyrolactone-specific reporter system. Hsiao NH, Nakayama S, Merlo ME, de Vries M, Bunet R, Kitani S, Nihira T, Takano E, ChemBiol 2009 16 951 960
22. Site-directed mutagenesis of the A-factor receptor protein: Val-41 important for DNA-binding and Trp-119 important for ligand-binding. Sugiyama M, Onaka H, Nakagawa T, Horinouchi S, Gene 1998 222 133 144 10.1016/S0378-1119(98) 00487-9 9813285 (Pubitemid 28566161)
23. Regulation of secondary metabolism in streptomycetes. Bibb MJ, CurrOpin Microbiol 2005 8 208 215 (Pubitemid 40417964)
24. Characterization of a novel two-component regulatory system involved in the regulation of both actinorhodin and a type I polyketide in Streptomyces coelicolor. Lu Y, Wang W, Shu D, Zhang W, Chen L, Qin Z, Yang S, Jiang W, ApplMicrobiol Biotechnol 2007 77 625 635 10.1007/s00253-007-1184-5 (Pubitemid 350125500)
25. Feast or famine: the global regulator DasR links nutrient stress to antibiotic production byStreptomyces. Rigali S, Titgemeyer F, Barends S, Mulder S, Thomae AW, Hopwood DA, van Wezel GP, EMBO Rep 2008 9 670 675 10.1038/embor.2008.83 18511939 (Pubitemid 351927688)
26. Specific enzymatic amplification of DNA in vitro: the polymerase chain reaction. Mullis K, Faloona F, Scharf S, Saiki R, Horn G, Erlich H, Cold Spring HarbSymp Quant Biol 1986 51 Pt 1 263 273 (Pubitemid 17076711)
27. The unstable region of Streptomyces ambofaciens includes 210 kb terminal inverted repeats flanking the extremities of the linear chromosomal DNA. Leblond P, Fischer G, Francou FX, Berger F, Guerineau M, Decaris B, MolMicrobiol 1996 19 261 271
28. Primary and secondary metabolism, and post-translational protein modifications, as portrayed by proteomic analysis ofStreptomyces coelicolor. Hesketh AR, Chandra G, Shaw AD, Rowland JJ, Kell DB, Bibb MJ, Chater KF, MolMicrobiol 2002 46 917 932 (Pubitemid 35370582)
29. A set of ordered cosmids and a detailed genetic and physical map for the 8 MbStreptomyces coelicolor A3(2) chromosome. Redenbach M, Kieser HM, Denapaite D, Eichner A, Cullum J, Kinashi H, Hopwood DA, MolMicrobiol 1996 21 77 96 (Pubitemid 26233084)
30. Construction of a dual-tag system for gene expression, protein affinity purification and fusion protein processing. Motejadded H, Altenbuchner J, BiotechnolLett 2009 31 543 549
31. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Laemmli UK, Nature 1970 227 680 685 10.1038/227680a0 5432063
32. Plasmid cloning vectors for the conjugal transfer of DNA fromEscherichia colitoStreptomyces spp. Bierman M, Logan R, O'Brien K, Seno ET, Rao RN, Schoner BE, Gene 1992 116 43 49 10.1016/0378-1119(92)90627-2 1628843
33. The stringent response inStreptomyces coelicolor A3(2). Strauch E, Takano E, Baylis HA, Bibb MJ, MolMicrobiol 1991 5 289 298 (Pubitemid 21896046)