The unstable region of Streptomyces ambofaciens includes 210kb terminal inverted repeats flanking the extremities of the linear chromosomal DNA

Molecular Microbiology

Volumn 19, Issue 2, 1996, Pages 261-271

  Leblond, Pierre ^a   Fischer, Gilles ^a   Francou, François Xavier ^b   Berger, Franca ^a   Guérineau, Michel ^b   Decaris, Bernard ^a  

^a UNIVERSITÉ DE LORRAINE   (France)

^b CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

REPETITIVE DNA;

ARTICLE; CHROMOSOME; GENE MAPPING; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; STREPTOMYCES;

CHROMOSOMES, BACTERIAL; DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; DNA, BACTERIAL; GENE LIBRARY; GENETIC MARKERS; REPETITIVE SEQUENCES, NUCLEIC ACID; RESTRICTION MAPPING; STREPTOMYCES;

STREPTOMYCES AMBOFACIENS; STREPTOMYCES COELICOLOR;

EID: 0030047325     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2958.1996.366894.x     Document Type: Article

References (40)

1. Aubert, M., Weber, E., Schneider, D., Simonet, J.-M., and Decaris, B. (1993) Primary structure analysis of a duplicated region in the amplifiable AUD6 locus of Streptomyces ambofaciens DSM40697. FEMS Microbiol Lett 113: 49-56.
2. Allardet-Servent, A., Michaux-Charanchon, S., Jumas-Bilak, E., Karayan, L., and Ramuz, M. (1993) Presence of one linear and one circular chromosome in the Agrobacterium tumefaciens C58 genome. J Bacteriol 175: 7869-7874.
3. Bucca, G., Smith, C.P., Alberti, M., Seidita, G., Passantino, R., and Puglia, A.M. (1993) Cloning and sequencing of the dnaK region of Streptomyces coelicolor A3(2). Gene 130: 141-144.
4. Casjens, S., and Huang, W.M. (1993) Linear chromosomal physical and genetic map of Borrelia burgdorferi, the Lyme disease agent. Mol Microbiol 8: 967-980.
5. Chen, C.W., Yu, T.-W., Lin, Y.-S., Kieser, H.M., and Hopwood, D.A. (1993) The conjugative plasmid SLP2 of Streptomyces lividans is a 50kb linear molecule. Mol Microbiol 7: 925-932.
6. Chu, G., Vollrath, D., and Davis, R.W. (1986) Separation of large DNA molecules by contour-clamped homogeneous electric fields. Science 234: 1582-1585.
7. Drlica, K., and Riley, M. (1990) A historical introduction to the bacterial chromosome. In The Bacterial Chromosome. Drlica, K., and Riley, M. (eds). Washington, DC: American Society for Microbiology, pp. 3-14.
8. Duchêne, A.-M., Kieser, H.M., Hopwood, D.A., Thompson, C.J., and Mazodier, P. (1994) Characterization of two groEL genes in Streptomyces coelicolor A3(2). Gene 144: 97-101.
9. Ferdows, M.S., and Barbour, A.G. (1989) Megabase-sized linear DNA in the bacterium Borrelia burgdorferi the Lyme disease agent. Proc Natl Acad Sci USA 86: 5969-5973.
10. Gravius, B., Glocker, D., Pigac, J., Pandza, K., Hranueli, D., and Cullum, J. (1994) The 387kb linear plasmid pPZG101 of Streptomyces rimosus and its interactions with the chromosome. Microbiol 140: 2271-2277.
11. Hinnebusch, J., and Tilly, K. (1993) Linear plasmids and chromosomes in bacteria. Mol Microbiol 10: 917-922.
12. Hopwood, D.A., Bibb, M.J., Chater, K.P., Kieser, T., Bruton, C.J., Kieser, H.M., Lydiate, D.J., Smith, C.P., Ward, J.M., and Schrempf, H. (1985) Genetic Manipulation of Streptomyces: A Laboratory Manual. Norwich: John Innes Foundation.
13. Hütter, R. (1967) Systematik der Streptomycete. Basel: Karger Verlag.
14. Ikeda, H., Tanaka, H., and Omura, S. (1982) Isolation and characterization of covalently closed circular DNA associated with chromosomal and membrane fraction from Streptomyces ambofaciens. J Antibiot 35: 497-506.
15. Kendall, K., Ali-Dunkrah, U., and Cullum, J. (1987) Cloning of the galactokinase gene (ga/K) from Streptomyces coelicolor A3(2). J Gen Microbiol 133: 721-725.
16. Kieser, H.M., Kieser, T., and Hopwood, D.A. (1992) A combined genetic and physical map of the Streptomyces coelicolor A3(2) chromosome. J Bacteriol 174: 5496-5507.
17. Kinashi, H., Shimaji-Murayama, F., and Hanafusa, T. (1991) Nucleotide sequence analysis of the unusually long terminal inverted repeats of the giant linear plasmid, SCP1. Plasmid 26: 123-130.
18. Leblond, P., and Decaris, B. (1994) New insights into the genetic instability of Streptomyces. FEMS Microbiol Lett 123: 225-232.
19. Leblond, P., Francou, F.X., Simonet, J-M., and Decaris, B. (1990) Pulsed-field gel electrophoresis analysis of the genome of Streptomyces ambofaciens strains. FEMS Microbiol Lett 72: 79-88.
20. Leblond, P., Demuyter, P., Simonet, J.-M., and Decaris, B. (1991) Genetic instability and associated genome plasticity in Streptomyces ambofaciens: pulsed-field gel electrophoresis evidence for large DNA alterations in a limited genomic region. J Bacteriol 173: 4229-4233.
21. Leblond, P., Redenbach, M., and Cullum, J. (1993) Physical map of Streptomyces lividans 66 genome and comparison with that of the related strain Streptomyces coelicolor A3(2). J Bacteriol 175: 3422-3429.
22. Lin, Y.-S., Kieser, H.M., Hopwood, D.A., and Chen, C.W. (1993) The chromosomal DNA of Streptomyces lividans 66 is linear. Mol Microbiol 10: 923-933.
23. Lydiate, D.J., Mendez, C., Kieser, H.M., and Hopwood, D.A. (1988) Mutation and cloning of clustered Streptomyces genes essential for sulphate metabolism. Mol Gen Genet 211: 415-423.
24. Mazodier, P., Guglielmi, G., Davies, J., and Thompson, C.J. (1991) Characterization of the groEL-like genes in Streptomyces albus. J Bacteriol 173: 7382-7386.
25. Mendez, C., and Chater, K.F. (1987) Cloning of whiG, a gene critical for sporulation of Streptomyces coelicolor A3(2). J Bacteriol 169: 5715-5720.
26. Michaux, S., Paillisson, J., Carles-Nurit, M.J., Bourg, G., Allardet-Servent, A., and Ramuz, M. (1993) Presence of two independent chromosomes in the Brucella melitensis 16M genome. J Bacteriol 175: 701-705.
27. Pernodet, J.-L., Simonet, J.-M., and Guérineau, M. (1984) Plasmids in different strains of Streptomyces ambofaciens: free and integrated form of plasmid pSAM2. Mol Gen Genet 198: 35-41.
28. Pernodet, J.-L., Boccard, F., Alegre, M.-T., Gagnat, J., and Guérineau, M. (1989) Organization and nucleotide sequence analysis of a ribosomal RNA gene cluster from Streptomyces ambofaciens. Gene 79: 33-46.
29. Pinnert-Sindico, S., Ninet, L., Preud'homme, J., and Cosar, C. (1955) A new antibiotic spiramycin. Antibiot Ann 1954-1955, 724-727.
30. Piret, J., and Chater, K.F. (1985) Phage-mediated cloning of bldA, a region involved in Streptomyces coelicolor morphological development, and its analysis by genetic complementation. J Bacteriol 165: 965-972.
31. Redenbach, M., Flett, F., Piendl, W., Glocker, I., Rauland, U., Wafzig, O., Kliem, R., Leblond, P., and Cullum, J. (1993) The Streptomyces lividans 66 chromosome contains a 1 Mb deletogenic region flanked by two amplifiable regions. Mol Gen Genet 241: 255-262.
32. Redenbach, M., Arnold, A., Rauland, U., and Cullum, J. (1994) Structural instability of the Streptomyces lividans 66 chromosome and related effects. Actinomycetol 8: 97-102.
33. Sakaguchi, K. (1990) Invertrons, a class of structurally and functionally related genetic elements that include linear DNA plasmids, transposable elements, and genomes of Adeno-type viruses. Microbiol Rev 54: 66-74.
34. Sambrook, J., Fritsch, E.F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
35. Seno, E.T., Bruton, C.J., and Chater, K.F. (1984) The glycerol utilization operon of Streptomyces coelicolor: genetic mapping of gyl mutations and analysis of cloned gyl DNA. Mol Gen Genet 193: 119-128.
36. Smith, G.E., and Summers, M.D. (1980) The bidirectional transfert of DNA and RNA to nitrocellulose or diazobenzyloxymethyl paper. Anal Biochem 109: 123-129.
37. Stackebrandt, E., Liesack, W., and Witt, D. (1992) Ribosomal RNA and rDNA sequence analyses. Gene 115: 255-260.
38. Suwanto, A., and Kaplan, S. (1989) Physical and genetic mapping of the Rhodobacter sphaeroides 2.4.1. genome: presence of two unique circular chromosomes. J Bacteriol 171: 5850-5859.
39. Van Wezel, G.P., Buttner, M., Vijgenboom, E., Bosch, L., Hopwood, D.A., and Kieser, H.M. (1995) Mapping of genes involved in macromolecular synthesis on the chromosome of Streptomyces coelicolor A3(2). J Bacteriol 177: 473-476.
40. Zuerner, R.L., Herrmann, J.-L., and Saint Girons, I. (1993) Comparison of genetic maps for two Leptospira interrogans serovars provides evidence for two chromosomes and intraspecies heterogeneity. J Bacteriol 175: 5445-5451.