-
1
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture SILAC as a simple and accurate approach to expression proteomics
-
Ong SE, Blagoev B, Kratchmarova I et al (2002) Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol Cell Proteomics 1:376-386
-
(2002)
Mol. Cell. Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
-
2
-
-
0037337310
-
A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling
-
Blagoev B, Kratchmarova I, Ong SE et al (2003) A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling. Nat Biotechnol 21: 315-318
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 315-318
-
-
Blagoev, B.1
Kratchmarova, I.2
Ong, S.E.3
-
3
-
-
67349225422
-
New dimensions in the study of protein complexes using quantitative mass spectrometry
-
Oeljeklaus S, Meyer HE, Warscheid B (2009) New dimensions in the study of protein complexes using quantitative mass spectrometry. FEBS Lett 583:1674-1683
-
(2009)
FEBS Lett.
, vol.583
, pp. 1674-1683
-
-
Oeljeklaus, S.1
Meyer, H.E.2
Warscheid, B.3
-
4
-
-
39049117451
-
Identifying dynamic interactors of protein complexes by quantitative mass spectrometry
-
Wang X, Huang L (2008) Identifying dynamic interactors of protein complexes by quantitative mass spectrometry. Mol Cell Proteomics 7:46-57
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 46-57
-
-
Wang, X.1
Huang, L.2
-
5
-
-
43849110454
-
Quantitative proteomics reveals regulation of dynamic components within TATA-binding protein TBP transcription complexes
-
Mousson F, Kolkman A, Pijnappel WW et al (2008) Quantitative proteomics reveals regulation of dynamic components within TATA-binding protein (TBP) transcription complexes. Mol Cell Proteomics 7:845-852
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 845-852
-
-
Mousson, F.1
Kolkman, A.2
Pijnappel, W.W.3
-
6
-
-
0242569349
-
A proteomic approach for quantitation of phosphorylation using stable isotope labeling in cell culture
-
Ibarrola N, Kalume DE, Gronborg M et al (2003) A proteomic approach for quantitation of phosphorylation using stable isotope labeling in cell culture. Anal Chem 75:6043-6049
-
(2003)
Anal. Chem.
, vol.75
, pp. 6043-6049
-
-
Ibarrola, N.1
Kalume, D.E.2
Gronborg, M.3
-
7
-
-
15944377809
-
Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway
-
Gruhler A, Olsen JV, Mohammed S et al (2005) Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway. Mol Cell Proteomics 4:310-327
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 310-327
-
-
Gruhler, A.1
Olsen, J.V.2
Mohammed, S.3
-
8
-
-
18744375196
-
Identifying and quantifying in vivo methylation sites by heavy methyl SILAC
-
Ong SE, Mittler G, Mann M (2004) Identifying and quantifying in vivo methylation sites by heavy methyl SILAC. Nat Methods 1: 119-126
-
(2004)
Nat. Methods
, vol.1
, pp. 119-126
-
-
Ong, S.E.1
Mittler, G.2
Mann, M.3
-
9
-
-
57349161921
-
Constitutive and dynamic phosphorylation and acetylation sites on NUCKS, a hypermodified nuclear protein, studied by quantitative proteomics
-
Wiśniewski JR, Zougman A, Krüger S et al (2008) Constitutive and dynamic phosphorylation and acetylation sites on NUCKS, a hypermodified nuclear protein, studied by quantitative proteomics. Proteins 73:710-718
-
(2008)
Proteins
, vol.73
, pp. 710-718
-
-
Wiśniewski, J.R.1
Zougman, A.2
Krüger, S.3
-
10
-
-
68949212379
-
Lysine acetylation targets protein complexes and co-regulates major cellular functions
-
Choudhary C, Kumar C, Gnad F et al (2009) Lysine acetylation targets protein complexes and co-regulates major cellular functions. Science 325:834-840
-
(2009)
Science
, vol.325
, pp. 834-840
-
-
Choudhary, C.1
Kumar, C.2
Gnad, F.3
-
11
-
-
55949136614
-
Quantitative analysis of global ubiquitination in hela cells by mass spectrometry
-
Meierhofer D, Wang X, Huang L, Kaiser P (2008) Quantitative analysis of global ubiquitination in HeLa cells by mass spectrometry. J Proteome Res 7:4566-4576
-
(2008)
J. Proteome. Res.
, vol.7
, pp. 4566-4576
-
-
Meierhofer, D.1
Wang, X.2
Huang, L.3
Kaiser, P.4
-
13
-
-
77951644400
-
Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis
-
Olsen JV, Vermeulen M, Santamaria A et al (2010) Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. Sci Signal 3(104):ra3
-
(2010)
Sci. Signal
, vol.3
, Issue.104
-
-
Olsen, J.V.1
Vermeulen, M.2
Santamaria, A.3
-
14
-
-
33644701579
-
The turnover kinetics of major histocompatibility complex peptides of human cancer cells
-
Milner E, Barnea E, Beer I, Admon A (2006) The turnover kinetics of major histocompatibility complex peptides of human cancer cells. Mol Cell Proteomics 5:357-365
-
(2006)
Mol. Cell. Proteomics
, vol.5
, pp. 357-365
-
-
Milner, E.1
Barnea, E.2
Beer, I.3
Admon, A.4
-
15
-
-
52649157711
-
Combined use of RNAi and quantitative proteomics to study gene function in drosophila
-
Bonaldi T, Straub T, Cox J et al (2008) Combined use of RNAi and quantitative proteomics to study gene function in Drosophila. Mol Cell 31:762-772
-
(2008)
Mol. Cell.
, vol.31
, pp. 762-772
-
-
Bonaldi, T.1
Straub, T.2
Cox, J.3
-
16
-
-
77954371891
-
Stable isotope labeling by amino acids in cell culture SILAC applied to quantitative proteomics of bacillus subtilis
-
Sou fiB, Kumar C, Gnad F et al (2010) Stable isotope labeling by amino acids in cell culture (SILAC) applied to quantitative proteomics of Bacillus subtilis . J Proteome Res 9:3638-3646
-
(2010)
J. Proteome. Res.
, vol.9
, pp. 3638-3646
-
-
Soufi, B.1
Kumar, C.2
Gnad, F.3
-
17
-
-
28644448658
-
Stable isotope labeling of arabidopsis thaliana cells and quantitative proteomics by mass spectrometry
-
Gruhler A, Schulze WX, Matthiesen R et al (2005) Stable isotope labeling of Arabidopsis thaliana cells and quantitative proteomics by mass spectrometry. Mol Cell Proteomics 4:1697-1709
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 1697-1709
-
-
Gruhler, A.1
Schulze, W.X.2
Matthiesen, R.3
-
18
-
-
77958018495
-
The SILAC fl y allows for accurate protein quantification in vivo
-
Sury MD, Chen JX, Selbach M (2010) The SILAC fl y allows for accurate protein quantification in vivo. Mol Cell Proteomics 9: 2173-2183
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 2173-2183
-
-
Sury, M.D.1
Chen, J.X.2
Selbach, M.3
-
19
-
-
47549099572
-
SILAC mouse for quantitative proteomics uncovers kindlin-3 as an essential factor for red blood cell function
-
Krüger M, Moser M, Ussar S et al (2008) SILAC mouse for quantitative proteomics uncovers kindlin-3 as an essential factor for red blood cell function. Cell 134:353-364
-
(2008)
Cell
, vol.134
, pp. 353-364
-
-
Krüger, M.1
Moser, M.2
Ussar, S.3
-
20
-
-
0012351964
-
Properties of 13C-substituted arginine instable isotope labeling by amino acids in cell culture SILAC
-
Ong SE, Kratchmarova I, Mann M (2003) Properties of 13C-substituted arginine instable isotope labeling by amino acids in cell culture (SILAC). J Proteome Res 2:173-181
-
(2003)
J. Proteome. Res.
, vol.2
, pp. 173-181
-
-
Ong, S.E.1
Kratchmarova, I.2
Mann, M.3
-
21
-
-
52649167339
-
Prevention of amino acid conversion in SILAC experiments with embryonic stem cells
-
Bendall SC, Hughes C, Stewart MH et al (2008) Prevention of amino acid conversion in SILAC experiments with embryonic stem cells. Mol Cell Proteomics 7:1587-1597
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 1587-1597
-
-
Bendall, S.C.1
Hughes, C.2
Stewart, M.H.3
-
22
-
-
77954695928
-
A genetic engineering solution to the arginine conversion problem in stable isotope labeling by amino acids in cell culture SILAC
-
Bicho CC, De Lima AF, Chen ZA et al (2010) A genetic engineering solution to the "arginine conversion problem" in stable isotope labeling by amino acids in cell culture (SILAC). Mol Cell Proteomics 9:1567-1577
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 1567-1577
-
-
Bicho, C.C.1
De Lima, A.F.2
Chen, Z.A.3
-
23
-
-
33644524918
-
Mass spectrometrybased proteomics turns quantitative
-
Ong SE, Mann M (2005) Mass spectrometrybased proteomics turns quantitative. Nat Chem Biol 1:252-262
-
(2005)
Nat. Chem. Biol.
, vol.1
, pp. 252-262
-
-
Ong, S.E.1
Mann, M.2
-
24
-
-
16344389629
-
Metabolic labeling of proteins for proteomics
-
Beynon RJ, Pratt JM (2005) Metabolic labeling of proteins for proteomics. Mol Cell Proteomics 4:857-872
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 857-872
-
-
Beynon, R.J.1
Pratt, J.M.2
-
25
-
-
60849098775
-
Temporal pro filing of the adipocyte proteome during differentiation using a five-plex SILAC based strategy
-
Molina H, Yang Y, Ruch T et al (2009) Temporal pro filing of the adipocyte proteome during differentiation using a five-plex SILAC based strategy. J Proteome Res 8:48-58
-
(2009)
J. Proteome. Res.
, vol.8
, pp. 48-58
-
-
Molina, H.1
Yang, Y.2
Ruch, T.3
-
26
-
-
79953701087
-
Andromeda: A peptide search engine integrated into the maxquant environment
-
Cox J, Neuhauser N, Michalski A, Scheltema RA et al (2011) Andromeda: A peptide search engine integrated into the MaxQuant environment. J Proteome Res 10:1794-1805
-
(2011)
J. Proteome. Res.
, vol.10
, pp. 1794-1805
-
-
Cox, J.1
Neuhauser, N.2
Michalski, A.3
Scheltema, R.A.4
-
27
-
-
34247396011
-
A practical recipe for stable isotope labeling by amino acids in cell culture SILAC
-
Ong SE, Mann M (2006) A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC). Nat Protoc 1:2650-2660
-
(2006)
Nat. Protoc.
, vol.1
, pp. 2650-2660
-
-
Ong, S.E.1
Mann, M.2
-
28
-
-
33750336592
-
Quantitative proteomics to study mitogen-activated protein kinases
-
Blagoev B, Mann M (2006) Quantitative proteomics to study mitogen-activated protein kinases. Methods 40:243-250
-
(2006)
Methods
, vol.40
, pp. 243-250
-
-
Blagoev, B.1
Mann, M.2
-
29
-
-
79952448233
-
Preventing arginine-to-proline conversion in a cell line independent manner during cell cultivation under SILAC conditions
-
Lößner C, Warnken U, Pscherer A, Schnölzer M (2011) Preventing arginine-to-proline conversion in a cell line independent manner during cell cultivation under SILAC conditions. Anal Biochem 412:123-125
-
(2011)
Anal. Biochem.
, vol.412
, pp. 123-125
-
-
Lößner, C.1
Warnken, U.2
Pscherer, A.3
Schnölzer, M.4
-
30
-
-
0017184389
-
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
-
Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72: 248-254
-
(1976)
Anal. Biochem.
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
31
-
-
57449099865
-
Maxquant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteomewide protein quantification
-
Cox J, Mann M (2008) MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteomewide protein quantification. Nat Biotechnol 26:1367-1372
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 1367-1372
-
-
Cox, J.1
Mann, M.2
-
32
-
-
67649400942
-
A practical guide to the maxquant computational platform for SILAC-based quantitative proteomics
-
Cox J, Matic I, Hilger M et al (2009) A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics. Nat Protoc 4:698-705
-
(2009)
Nat. Protoc.
, vol.4
, pp. 698-705
-
-
Cox, J.1
Matic, I.2
Hilger, M.3
-
33
-
-
44449162195
-
Absolute SILAC for accurate quantitation of proteins in complex mixtures down to the attomole level
-
Hanke S, Besir H, Oesterhelt D, Mann M (2008) Absolute SILAC for accurate quantitation of proteins in complex mixtures down to the attomole level. J Proteome Res 7:1118-1130
-
(2008)
J. Proteome. Res.
, vol.7
, pp. 1118-1130
-
-
Hanke, S.1
Besir, H.2
Oesterhelt, D.3
Mann, M.4
-
35
-
-
60849097304
-
Turnover of the human proteome: Determination of protein intracellular stability by dynamic SILAC
-
Doherty MK, Hammond DE, Clague MJ et al (2009) Turnover of the human proteome: Determination of protein intracellular stability by dynamic SILAC. J Proteome Res 8:104-112
-
(2009)
J. Proteome. Res.
, vol.8
, pp. 104-112
-
-
Doherty, M.K.1
Hammond, D.E.2
Clague, M.J.3
-
36
-
-
72449196261
-
Global effects of kinase inhibitors on signaling networks revealed by quantitative phosphoproteomics
-
Pan C, Olsen JV, Daub H, Mann M (2009) Global effects of kinase inhibitors on signaling networks revealed by quantitative phosphoproteomics. Mol Cell Proteomics 8:2796-2808
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 2796-2808
-
-
Pan, C.1
Olsen, J.V.2
Daub, H.3
Mann, M.4
-
37
-
-
77952226764
-
Super-SILAC mix for quantitative proteomics of human tumor tissue
-
Geiger T, Cox J, Ostasiewicz P et al (2010) Super-SILAC mix for quantitative proteomics of human tumor tissue. Nat Methods 7: 383-385
-
(2010)
Nat. Methods
, vol.7
, pp. 383-385
-
-
Geiger, T.1
Cox, J.2
Ostasiewicz, P.3
-
38
-
-
77958481159
-
Nucleosome-interacting proteins regulated by DNA and histone methylation
-
Bartke T, Vermeulen M, Xhemalce B et al (2010) Nucleosome-interacting proteins regulated by DNA and histone methylation. Cell 143:470-484
-
(2010)
Cell
, vol.143
, pp. 470-484
-
-
Bartke, T.1
Vermeulen, M.2
Xhemalce, B.3
-
39
-
-
78049334902
-
Trans-SILAC: Sorting out the non-cellautonomous proteome
-
Rechavi O, Kalman M, Fang Y et al (2010) Trans-SILAC: Sorting out the non-cellautonomous proteome. Nat Methods 7: 923-927
-
(2010)
Nat. Methods
, vol.7
, pp. 923-927
-
-
Rechavi, O.1
Kalman, M.2
Fang, Y.3
-
40
-
-
0032873415
-
Three new dominant drug resistance cassettes for gene disruption in saccharomyces cerevisiae
-
Goldstein AL, McCusker JH (1999) Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae . Yeast 15:1541-1553
-
(1999)
Yeast
, vol.15
, pp. 1541-1553
-
-
Goldstein, A.L.1
McCusker, J.H.2
-
41
-
-
0032775010
-
Epitope tagging of yeast genes using a PCRbased strategy: More tags and improved practical routines
-
Knop M, Siegers K, Pereira G et al (1999) Epitope tagging of yeast genes using a PCRbased strategy: More tags and improved practical routines. Yeast 15:963-972
-
(1999)
Yeast
, vol.15
, pp. 963-972
-
-
Knop, M.1
Siegers, K.2
Pereira, G.3
|