Molecular characterization of NAD+-dependent DNA ligase from Wolbachia endosymbiont of lymphatic filarial parasite Brugia malayi

PLoS ONE

Volumn 7, Issue 7, 2012, Pages

  Shrivastava, Nidhi ^a   Nag, Jeetendra Kumar ^a   Misra Bhattacharya, Shailja ^a  

^a CENTRAL DRUG RESEARCH INSTITUTE   (India)

Author keywords

[No Author keywords available]

Indexed keywords

NICOTINAMIDE ADENINE DINUCLEOTIDE; NICOTINAMIDE ADENINE DINUCLEOTIDE DEPENDENT DNA LIGASE; POLYDEOXYRIBONUCLEOTIDE SYNTHASE; RECOMBINANT PROTEIN; UNCLASSIFIED DRUG; ZINC BINDING PROTEIN;

ADENYLATION; AMINO TERMINAL SEQUENCE; ARTICLE; BRUGIA MALAYI; CIRCULAR DICHROISM; CONTROLLED STUDY; ENDOSYMBIONT; ENZYME ANALYSIS; ENZYME LOCALIZATION; ENZYME PURIFICATION; ENZYME STRUCTURE; FEMALE; IN VITRO STUDY; MOLECULAR CLONING; MOLECULAR INTERACTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN EXPRESSION; PROTEIN PURIFICATION; WOLBACHIA;

AMINO ACID SEQUENCE; ANIMALS; BLOTTING, WESTERN; BRUGIA MALAYI; CATALYSIS; CIRCULAR DICHROISM; DNA LIGASES; FEMALE; IMMUNOBLOTTING; MALE; MICE; MICE, INBRED BALB C; MICROSCOPY, CONFOCAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; RECOMBINANT PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID; SPECTROMETRY, FLUORESCENCE; WOLBACHIA;

BACTERIA (MICROORGANISMS); BRUGIA MALAYI; ENDOBACTERIA; LIGA; WOLBACHIA;

EID: 84864003594     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0041113     Document Type: Article

References (35)

1. Hoerauf A, Mand S, Volkmann L, Büttner M, Debrekyei YM, et al. (2003) Doxycycline in the treatment of human onchocerciasis: kinetics of Wolbachia endobacteria reduction and of inhibition of embryogenesis in female Onchocerca worms. Microbes Infect 5: 261-273.
2. Taylor MJ, Hoerauf A, (2001) A new approach to the treatment of filariasis. Curr Op Infect Dis 14: 727-731.
3. Foster J, Ganatra M, Kamal I, Ware J, Makarova K, et al. (2005) The Wolbachia Genome of Brugia malayi: Endosymbiont Evolution within a Human Pathogenic Nematode. PLoS Biol 3: 0599-0614.
4. Lindahl T, Barnes DE, (1992) Mammalian DNA ligases. Annu Rev Biochem 61: 251-258.
5. Gottesman MM, Hicks ML, Gellert M, (1973) Genetics and function of DNA ligase in Escherichia coli. J Mol Biol 77: 531-547.
6. Tomkinson AE, Mackey ZB, (1998) Structure and function of mammalian DNA ligases. Mutat Res 407: 1-9.
7. Lehman IR, (1974) DNA ligase: Structure, mechanism and function. Science 186: 790-797.
8. Doherty AJ, Suh SW, (2000) Structural and mechanistic conservation in DNA ligases. Nucleic Acids Res 28: 4051-4058.
9. Ferrer M, Golyshina OV, Beloqui A, Bottger LH, Andre JM, et al. (2008) A purple acidophilic di-ferric DNA ligase from Ferroplasma. Proc Natl Acad Sci 105: 8878-8883.
10. Srivastava SK, Tripathi RP, Ramachandran R, (2005) NAD+-dependent DNA Ligase (Rv3014c) from Mycobacterium tuberculosis. Crystal Structure of the adenylation domain and identification of novel inhibitors. J Biol Chem 280: 30273-30281.
11. Wilkinson A, Smith A, Bullard D, Curto ML, Sayer H, et al. (2005) Analysis of ligation and DNA binding by Escherichia coli DNA ligase (LigA). Biochimica et Biophysica Acta 1749: 113-122.
12. Sriskanda V, Moyer RW, Shuman S, (2001) NAD+-dependent DNA Ligase Encoded by a Eukaryotic Virus. J Biol Chem 276: 36100-36109.
13. Kaczmarek FS, Zaniewski RP, Gootz TD, Danley DE, Mansour MN, (2001) Cloning and functional characterization of an NAD(+)-dependent DNA ligase from Staphylococcus aureus. J Bacteriol 183: 3016-3024.
14. Park UE, Olivera BM, Hughes KT, Roth JR, Hillyard DR, (1989) DNA ligase and the pyridine nucleotide cycle in Salmonella typhimurium. J Bacteriol 171: 2173-2180.
15. Petit MA, Ehrlich SD, (2000) The NAD-dependent ligase encoded by yerG is an essential gene of Bacillus subtilis. Nucleic Acids Res 28: 4642-4648.
16. Machala MK, Rychta E, Brzostek A, Sayer HR, Galewicz AR, et al. (2007) Evaluation of NAD+-Dependent DNA Ligase of Mycobacteria as a Potential Target for antibiotics. Antimicrob Agents Chemother 51: 2888-2897.
17. Ettema TJ, Andersson SG, (2009) The α-proteobacteria: The Darwin finches of the bacterial world. Biol Lett 5: 429-432.
18. Gupta RS, (2005) Protein signatures distinctive of alpha proteobacteria and its subgroups and a model for α-proteobacterial evolution. Crit Rev Microbiol 31: 101-135.
19. Lim JH, Choi J, Kim W, Ahn BY, Han YS, (2001) Mutational analyses of Aquifex pyrophilus DNA ligase define essential domains for self-adenylation and DNA binding activity. Arch Biochem Biophys 388: 253-260.
20. Jeon HJ, Shin HJ, Choi JJ, Hoe HS, Kim SK, et al. (2004) Mutational analyses of the thermostable NAD(+)-dependent DNA ligase from Thermus filiformis. FEMS Microbiol Lett 237: 111-118.
21. Bork P, Hofmann K, Andrew P, Neuwald F, Altschul SF, et al. (1997) A superfamily of conserved domains in DNA damage-responsive cell cycle checkpoint proteins. FASEB J 11: 68-76.
22. Georlette D, JoÂnsson ZO, Petegem FV, Chessa JP, Beeumen JV, et al. (2000) A DNA ligase from the psychrophile Pseudoalteromonas haloplanktis gives insights into the adaptation of proteins to low temperatures. Eur J Biochem 267: 3502-3512.
23. Ciarrocchi G, MacPhee DG, Deady LW, Tilley L, (1999) Specific inhibition of the eubacterial DNA ligase by arylamino compounds. Antimicrob Agents Chemother 43: 2766-2772.
24. Brötz-Oesterhelt H, Knezevic I, Bartel S, Lampe T, Warnecke-Eberz U, et al. (2003) Specific and Potent Inhibition of NAD+-dependent DNA Ligase by Pyridochromanones. J Biol Chem 278: 39435-39442.
25. Lu J, Tong J, Feng H, Huang J, Afonso CL, et al. (2004) Unique ligation properties of eukaryotic NAD+-dependent DNA ligase from Melanoplus sanguinipes entomopoxvirus. Biochim Biophys Acta 1701: 37- 48.
26. Keppetipola N, Shuman S, (2005) Characterization of a Thermophilic ATP-Dependent DNA Ligase from the Euryarchaeon Pyrococcus horikoshii. J Bacteriol 187: 6902-6908.
27. Seo MS, Kim YJ, Choi JJ, Lee MS, Kim JH, et al. (2007) Cloning and expression of a DNA ligase from the hyperthermophilic archaeon Staphylothermus marinus and properties of the enzyme. J Biotechnol 128: 519-530.
28. Grothe HL, Little MR, Cho AS, Huang AJW, Yuan C, (2009) Denaturation and solvent effect on the conformation and fibril formation of TGFBIp. Mol Vis 15: 2617-2626.
29. Sambrook J, Russell DW, (2000) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory press 2: 9.16-9.19.
30. Singh M, Srivastava KK, Bhattacharya SM, (2009) Molecular cloning and characterization of a novel immunoreactive ATPase/RNAhelicase in human filarial parasite Brugia malayi. Parasitol Res 104: 753-761.
31. Perez-Iratxeta C, Andrade-Navarro MA, (2008) K2D2: Estimation of protein secondary structure from circular dichroism spectra. BMC Struct Biol 8: 25.
32. Bates PA, Kelley LA, MacCallum RM, Sternberg MJ, (2001) Enhancement of protein modelling by human intervention in applying the automatic programs 3D-JIGSAW and 3D-PSSM. Proteins 5: 39-46.
33. Sayle RA, Milner-White EJ, (1995) RASMOL: biomolecular graphics for all. Trends Biochem Sci. 20: 374.
34. Muerhoff AS, Dawson GJ, Desai SM, (2004) A non-isotopic method for the determination of activity of the thermostable NAD-dependent DNA ligase from Thermus thermophilus HB8. J Virol Methods 119: 171-176.
35. Haegeman A, Vanholme B, Jacob J, Vandekerckhove TTM, Claeys M, et al. (2009) An endosymbiotic bacterium in a plant-parasitic nematode: Member of a new Wolbachia supergroup. Int J Parasitol 39: 1045-1054.