Genome sequence of sphingomonas sp. Strain PAMC 26621, an arctic-lichen-associated bacterium isolated from a cetraria sp.

Journal of Bacteriology

Volumn 194, Issue 11, 2012, Pages 3030-

  Lee, Hyoungseok ^a   Shin, Seung Chul ^a   Lee, Jungeun ^a   Kim, Su Jin ^b   Kim, Bum Keun ^c   Hong, Soon Gyu ^a   Kim, Eun Hye ^a   Park, Hyun ^a  

^a Korea Polar Research Institute (KOPRI)   (South Korea)

^b Korea University   (South Korea)

^c Korea Food Research Institute   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

CONTIG; RNA 16S; RNA 23S;

ARCTIC; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM ISOLATE; CETRARIA; GENE SEQUENCE; LICHEN (ORGANISM); NONHUMAN; NOTE; OPEN READING FRAME; PRIORITY JOURNAL; SPHINGOMONAS; SYMBIOSIS;

ARCTIC REGIONS; BASE SEQUENCE; GENOME, BACTERIAL; LICHENS; MOLECULAR SEQUENCE DATA; SPHINGOMONAS; SVALBARD;

BACTERIA (MICROORGANISMS); CETRARIA; SPHINGOMONAS SP.;

EID: 84863999184     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.00395-12     Document Type: Note

References (11)

1. Aziz RK, et al. 2008. The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9:75.
2. Balkwill DL, et al. 1997. Taxonomic study of aromatic-degrading bacteria from deep-terrestrial-subsurface sediments and description of Sphingomonas aromaticivorans sp. nov., Sphingomonas subterranea sp. nov., and Sphingomonas stygia sp. nov. Int. J. Syst. Bacteriol. 47:191-201.
3. Baraniecki C, Aislabie J, Foght J. 2002. Characterization of Sphingomonas sp. Ant 17, an aromatic hydrocarbon-degrading bacterium isolated from Antarctic soil. Microb. Ecol. 43:44 -54.
4. Bates ST, Cropsey GW, Caporaso JG, Knight R, Fierer N. 2011. Bacterial communities associated with the lichen symbiosis. Appl. Environ. Microbiol. 77:1309 -1314.
5. Delcher AL, Harmon D, Kasif S, White O, Salzberg SL. 1999. Improved microbial gene identification with GLIMMER. Nucleic Acids Res. 27: 4636-4641.
6. Harayama S. 1997. Polycyclic aromatic hydrocarbon bioremediation design. Curr. Opin. Biotechnol. 8:268 -273.
7. Hodkinson BP, Gottel NR, Schadt CW, Lutzoni F. 2012. Photoautotrophic symbiont and geography are major factors affecting highly structured and diverse bacterial communities in the lichen microbiome. Environ. Microbiol. 14:147-161.
8. Mushegian AA, Peterson CN, Baker CC, Pringle A. 2011. Bacterial diversity across individual lichens. Appl. Environ. Microbiol. 77:4249-4252.
9. Myers EW, et al. 2000. A whole-genome assembly of Drosophila. Science 287:2196.
10. Shi T, Fredrickson JK, Balkwill DL. 2001. Biodegradation of polycyclic aromatic hydrocarbons by Sphingomonas strains isolated from the terrestrial subsurface. J. Ind. Microbiol. Biotechnol. 26:283-289.
11. Tatusov RL, et al. 2001. The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res. 29:22-28.