Transcriptional regulation of human-specific SVAF1 retrotransposons by cis-regulatory MAST2 sequences

Gene

Volumn 505, Issue 1, 2012, Pages 128-136

  Zabolotneva, Anastasia A ^a   Bantysh, Olga ^a   Suntsova, Maria V ^a   Efimova, Nadezhda ^a   Malakhova, Galina V ^a   Schumann, Gerald G ^b   Gayfullin, Nurshat M ^c   Buzdin, Anton A ^a  

^a SHEMYAKIN OVCHINNIKOV INSTITUTE OF BIOORGANIC CHEMISTRY   (Russian Federation)

^b PAUL EHRLICH INSTITUT   (Germany)

^c MOSCOW STATE UNIVERSITY   (Russian Federation)

Author keywords

Germ cells; Human genome; SVA retrotransposon; Transcriptional regulation; Transposable element

Indexed keywords

ALU SEQUENCE; ANIMAL TISSUE; ARTICLE; BRAIN; CONTROLLED STUDY; CPG ISLAND; DNA METHYLATION; EXON; GENE; GENE EXPRESSION; GENE SEQUENCE; GENETIC TRANSCRIPTION; GERM CELL; HEART; HUMAN; HUMAN CELL; HUMAN TISSUE; MAST2 GENE; MOUSE; NONHUMAN; PRIORITY JOURNAL; RETROPOSON; SVA F1 RETROTRANSPOSON; TESTIS; TRANSCRIPTION REGULATION;

CPG ISLANDS; EXONS; GERM CELLS; HUMANS; MALE; MICROTUBULE-ASSOCIATED PROTEINS; PROTEIN-SERINE-THREONINE KINASES; REGULATORY ELEMENTS, TRANSCRIPTIONAL; RETROELEMENTS; TESTIS; TRANSCRIPTION, GENETIC;

HOMINIDAE;

EID: 84863867106     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2012.05.016     Document Type: Article

References (32)

1. Bantysh O.B., Buzdin A.A. Novel family of human transposable elements formed due to fusion of the first exon of gene MAST2 with retrotransposon SVA. Biochemistry (Mosc.) 2009, 74:1393-1399.
2. BLAST web server at NCBI http://blast.ncbi.nlm.nih.gov/Blast.cgi.
3. Damert A., et al. 5'-transducing SVA retrotransposon groups spread efficiently throughout the human genome. Genome Res. 2009, 19:1992-2008.
4. Dewannieux M., Esnault C., Heidmann T. LINE-mediated retrotransposition of marked Alu sequences. Nat. Genet. 2003, 35:41-48.
5. Esnault C., Maestre J., Heidmann T. Human LINE retrotransposons generate processed pseudogenes. Nat. Genet. 2000, 24:363-367.
6. Gogvadze E., Buzdin A. Retroelements and their impact on genome evolution and functioning. Cell. Mol. Life Sci. 2009, 66:3727-3742.
7. Goodier J.L., Kazazian H.H. Retrotransposons revisited: the restraint and rehabilitation of parasites. Cell 2008, 135:23-35.
8. Han K., et al. Mobile DNA in Old World monkeys: a glimpse through the rhesus macaque genome. Science 2007, 316:238-240.
9. Hancks D.C., Kazazian H.H. SVA retrotransposons: evolution and genetic instability. Semin. Cancer Biol. 2010, 20:234-245.
10. Hancks D.C., et al. Retrotransposition of marked SVA elements by human L1s in cultured cells. Hum. Mol. Genet. 2011, 20:3386-3400.
11. Jewett M.A. Testis carcinoma: transplantation into nude mice. Natl. Cancer Inst. Monogr. 1978, 49:65-66.
12. Jurka J., Gentles A.J. Origin and diversification of minisatellites derived from human Alu sequences. Gene 2006, 365:21-26.
13. Kramerov D.A., Vassetzky N.S. Short retroposons in eukaryotic genomes. Int. Rev. Cytol. 2005, 247:165-221.
14. Livak K.J., Schmittgen T.D. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-delta delta c(t)) method. Methods 2001, 25:402-408.
15. Mills R.E., et al. Which transposable elements are active in the human genome?. Trends Genet. 2007, 23:183-191.
16. Molaro A., et al. Sperm methylation profiles reveal features of epigenetic inheritance and evolution in primates. Cell 2011, 146:1029-1041.
17. Olovnikov I.A., et al. A key role of the internal region of the 5'-untranslated region in the human L1 retrotransposon transcription activity. Mol. Biol. (Mosk.) 2007, 41:508-514.
18. Ono M., Kawakami M., Takezawa T. A novel human nonviral retroposon derived from an endogenous retrovirus. Nucleic Acids Res. 1987, 15:8725-8737.
19. Ostertag E.M., et al. SVA elements are nonautonomous retrotransposons that cause disease in humans. Am. J. Hum. Genet. 2003, 73:1444-1451.
20. Raiz J., et al. The non-autonomous retrotransposon SVA is trans-mobilized by the human LINE-1 protein machinery. Nucleic Acids Res. 2012, 40:1666-1683.
21. Repbase Update database http://www.girinst.org/repbase/update/index.html.
22. RNAfold software http://rna.tbi.univie.ac.at/cgi-bin/RNAfold.cgi.
23. Schumann G.G., et al. Unique functions of repetitive transcriptomes. Int. Rev. Cell Mol. Biol. 2010, 285:115-188.
24. Shaikh T.H., et al. cDNAs derived from primary and small cytoplasmic Alu (scAlu) transcripts. J. Mol. Biol. 1997, 271:222-234.
25. Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22:4673-4680.
26. UCSC Browser data on MAST2 transcription in human tissues http://genome.ucsc.edu/cgi-bin/hgGene?hgg_gene=uc001cov.2&hgg_prot=Q6P0Q8&hgg_chrom=chr1&hgg_start=46269284&hgg_end=46501797&hgg_type=knownGene&db=hg19&hgsid=184239277.
27. UCSC Browser data on MAST2 transcription in mouse tissues http://genome.ucsc.edu/cgi-bin/hgGene?hgg_gene=uc008ugn.1&hgg_prot=NP_001036208&hgg_chrom=chr4&hgg_start=115979366&hgg_end=116136788&hgg_type=knownGene&db=mm9&hgsid=184826333.
28. Walden P.D., Cowan N.J. A novel 205-kilodalton testis-specific serine/threonine protein kinase associated with microtubules of the spermatid manchette. Mol. Cell. Biol. 1993, 13:7625-7635.
29. Walden P.D., Millette C.F. Increased activity associated with the MAST205 protein kinase complex during mammalian spermiogenesis. Biol. Reprod. 1996, 55:1039-1044.
30. Wang H., et al. SVA elements: a hominid-specific retroposon family. J. Mol. Biol. 2005, 354:994-1007.
31. Wei W., et al. Human L1 retrotransposition: cis preference versus trans complementation. Mol. Cell. Biol. 2001, 21:1429-1439.
32. Xing J., et al. Emergence of primate genes by retrotransposon-mediated sequence transduction. Proc. Natl. Acad. Sci. U. S. A. 2006, 103:17608-17613.