-
1
-
-
79958863696
-
Enhancements to the ADMIXTURE algorithm for individual ancestry estimation
-
Alexander, D.H. and Lange, K. 2011 Enhancements to the ADMIXTURE algorithm for individual ancestry estimation. BMC Bioinformatics 12:246.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 246
-
-
Alexander, D.H.1
Lange, K.2
-
2
-
-
69749099417
-
Fast model-based estimation of ancestry in unrelated individuals
-
Alexander, D.H., Novembre, J., and Lange, K. 2009. Fast model-based estimation of ancestry in unrelated individuals. Genome Res. 19:1655-1664.
-
(2009)
Genome Res
, vol.19
, pp. 1655-1664
-
-
Alexander, D.H.1
Novembre, J.2
Lange, K.3
-
3
-
-
77954209603
-
Score-based adjustment for confounding by population stratification in genetic association studies
-
Allen, A., Epstein, M.P., and Satten, G.A. 2010. Score-based adjustment for confounding by population stratification in genetic association studies. Genet. Epidemiol. 34:383-385.
-
(2010)
Genet. Epidemiol.
, vol.34
, pp. 383-385
-
-
Allen, A.1
Epstein, M.P.2
Satten, G.A.3
-
4
-
-
77955166399
-
Population structure and cryptic relatedness in genetic association studies
-
Astle, W. and Balding, D.J. 2009. Population structure and cryptic relatedness in genetic association studies. Statistical Science 24:451-471.
-
(2009)
Statistical Science
, vol.24
, pp. 451-471
-
-
Astle, W.1
Balding, D.J.2
-
5
-
-
0036137032
-
Association studies for quantitative traits in structured populations
-
Bacanu, S.A., Devlin, B., and Roeder, K. 2002. Association studies for quantitative traits in structured populations. Genet. Epidemiol. 22:78-93.
-
(2002)
Genet. Epidemiol.
, vol.22
, pp. 78-93
-
-
Bacanu, S.A.1
Devlin, B.2
Roeder, K.3
-
6
-
-
77954542018
-
The genome-wide structure of the Jewish people
-
Behar, D.M., Yunusbayev, B., Metspalu, M., Metspalu, E., Rosset, S., Parik, J., Rootsi, S., Chaubey, G., Kutuev, I., Yudkovsky, G., Khusnutdinova, E.K., Balanovsky, O., Semino, O., Pereira, L., Comas, D., Gurwitz, D., Bonne-Tamir, B., Parfitt, T., Hammer, M.F., Skorecki, K., and Villems, R. 2010. The genome-wide structure of the Jewish people. Nature 466:238-242.
-
(2010)
Nature
, vol.466
, pp. 238-242
-
-
Behar, D.M.1
Yunusbayev, B.2
Metspalu, M.3
Metspalu, E.4
Rosset, S.5
Parik, J.6
Rootsi, S.7
Chaubey, G.8
Kutuev, I.9
Yudkovsky, G.10
Khusnutdinova, E.K.11
Balanovsky, O.12
Semino, O.13
Pereira, L.14
Comas, D.15
Gurwitz, D.16
Bonne-Tamir, B.17
Parfitt, T.18
Hammer, M.F.19
Skorecki, K.20
Villems, R.21
more..
-
7
-
-
77950380766
-
Local-scale patterns of genetic variability, outcrossing, and spatial structure in natural stands of Arabidopsis thaliana
-
Bomblies, K., Yant, L., Laitinen, R.A., Kim, S.T., Hollister, J.D., Warthmann, N., Fitz, J., and Weigel, D. 2010. Local-scale patterns of genetic variability, outcrossing, and spatial structure in natural stands of Arabidopsis thaliana. PLoS Genet. 6:e1000890.
-
(2010)
PLoS Genet
, vol.6
-
-
Bomblies, K.1
Yant, L.2
Laitinen, R.A.3
Kim, S.T.4
Hollister, J.D.5
Warthmann, N.6
Fitz, J.7
Weigel, D.8
-
8
-
-
0028184174
-
High resolution of human evolutionary trees with polymorphic microsatellites
-
Bowcock, A.M., Ruiz-Linares, A., Tomfohrde, J., Minch, E., Kidd, J.R., and Cavalli-Sforza, L.L. 1994. High resolution of human evolutionary trees with polymorphic microsatellites. Nature 368:455-457.
-
(1994)
Nature
, vol.368
, pp. 455-457
-
-
Bowcock, A.M.1
Ruiz-Linares, A.2
Tomfohrde, J.3
Minch, E.4
Kidd, J.R.5
Cavalli-Sforza, L.L.6
-
9
-
-
76249102674
-
Genome-wide patterns of population structure and admixture in West Africans and African Americans
-
Bryc, K., Auton, A., Nelson, M.R., Oksenberg, J.R., Hauser, S.L., Williams, S., Froment, A., Bodo, J.M., Wambebe, C., Tishkoff, S.A., and Bustamante,C.D. 2010a. Genome-wide patterns of population structure and admixture in West Africans and African Americans. Proc. Natl. Acad. Sci. U.S.A. 107:786-791.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 786-791
-
-
Bryc, K.1
Auton, A.2
Nelson, M.R.3
Oksenberg, J.R.4
Hauser, S.L.5
Williams, S.6
Froment, A.7
Bodo, J.M.8
Wambebe, C.9
Tishkoff, S.A.10
Bustamante, C.D.11
-
10
-
-
77952324523
-
Colloquium paper: Genome-wide patterns of population structure and admixture among Hispanic/ Latino populations
-
Bryc, K., Velez, C., Karafet, T., Moreno-Estrada, A., Reynolds, A., Auton, A., Hammer, M., Bustamante, C.D., and Ostrer, H. 2010b. Colloquium paper: Genome-wide patterns of population structure and admixture among Hispanic/ Latino populations. Proc. Natl. Acad. Sci. U.S.A. 107:8954-8961.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 8954-8961
-
-
Bryc, K.1
Velez, C.2
Karafet, T.3
Moreno-Estrada, A.4
Reynolds, A.5
Auton, A.6
Hammer, M.7
Bustamante, C.D.8
Ostrer, H.9
-
11
-
-
23044468633
-
Demonstrating stratification in a European American population
-
Campbell, C.D., Ogburn, E.L., Lunetta, K.L., Lyon, H.N., Freedman, M.L., Groop, L.C., Altshuler, D., Ardlie, K.G., and Hirschhorn, J.N. 2005. Demonstrating stratification in a European American population. Nat. Genet. 37:868-872.
-
(2005)
Nat. Genet.
, vol.37
, pp. 868-872
-
-
Campbell, C.D.1
Ogburn, E.L.2
Lunetta, K.L.3
Lyon, H.N.4
Freedman, M.L.5
Groop, L.C.6
Altshuler, D.7
Ardlie, K.G.8
Hirschhorn, J.N.9
-
12
-
-
0037442092
-
Population stratification and spurious allelic association
-
Cardon, L.R. and Palmer, L.J. 2003. Population stratification and spurious allelic association. Lancet 361:598-604.
-
(2003)
Lancet
, vol.361
, pp. 598-604
-
-
Cardon, L.R.1
Palmer, L.J.2
-
13
-
-
77958598598
-
CAPL: A novel association test using case-control and family data and accounting for population stratification
-
Chung, R.H., Schmidt, M.A., Morris, R.W., and Martin, E.R. 2010. CAPL: A novel association test using case-control and family data and accounting for population stratification. Genet. Epidemiol. 34:747-755.
-
(2010)
Genet. Epidemiol.
, vol.34
, pp. 747-755
-
-
Chung, R.H.1
Schmidt, M.A.2
Morris, R.W.3
Martin, E.R.4
-
14
-
-
0014297593
-
The effectiveness of adjustment by subclassification in removing bias in observational studies
-
Cochran, W.G. 1968. The effectiveness of adjustment by subclassification in removing bias in observational studies. Biometrics 24:295-313.
-
(1968)
Biometrics
, vol.24
, pp. 295-313
-
-
Cochran, W.G.1
-
15
-
-
66249135302
-
A critical evaluation of genomic control methods for genetic association studies
-
Dadd, T., Weale, M.E., and Lewis, C.M. 2009. A critical evaluation of genomic control methods for genetic association studies. Genet. Epidemiol. 33:290-298.
-
(2009)
Genet. Epidemiol.
, vol.33
, pp. 290-298
-
-
Dadd, T.1
Weale, M.E.2
Lewis, C.M.3
-
16
-
-
0032714352
-
Genomic control for association studies
-
Devlin, B. and Roeder, K. 1999. Genomic control for association studies. Biometrics 55:997-1004.
-
(1999)
Biometrics
, vol.55
, pp. 997-1004
-
-
Devlin, B.1
Roeder, K.2
-
17
-
-
0035528921
-
Genomic control, a new approach to genetic-based association studies
-
Devlin, B., Roeder, K., and Wasserman, L. 2001. Genomic control, a new approach to genetic-based association studies. Theor. Popul. Biol. 60:155-166.
-
(2001)
Theor. Popul. Biol.
, vol.60
, pp. 155-166
-
-
Devlin, B.1
Roeder, K.2
Wasserman, L.3
-
18
-
-
16544380910
-
Genomic control to the extreme
-
Devlin, B., Bacanu, S.A., and Roeder, K. 2004. Genomic control to the extreme. Nat. Genet. 36:1129-1130.
-
(2004)
Nat. Genet.
, vol.36
, pp. 1129-1130
-
-
Devlin, B.1
Bacanu, S.A.2
Roeder, K.3
-
19
-
-
79959835081
-
Genetic determinants of lipid traits in diverse populations from the Population Architecture Using Genomics and Epidemiology (PAGE) study
-
Dumitrescu, L., Carty, C.L., Taylor, K., Schumacher, F.R., Hindorff, L.A., Ambite, J.L., Anderson, G., Best, L.G., Brown-Gentry, K., Buzkova, P., Carlson, C.S., Cochran, B., Cole, S.A., Devereux, R.B., Duggan, D., Eaton, C.B., Fornage, M., Franceschini, N., Haessler, J., Howard, B.V., Johnson, K.C., Laston, S., Kolonel, L.N., Lee, E.T.,Maccluer, J.W.,Manolio, T.A., Pendergrass, S.A., Quibrera, M., Shohet, R.V., Wilkens, L.R., Haiman, C.A., Le, M.L., Buyske, S., Kooperberg, C., North, K.E., and Crawford, D.C. 2011. Genetic determinants of lipid traits in diverse populations from the Population Architecture Using Genomics and Epidemiology (PAGE) study. PLoS Genet. 7:e1002138.
-
(2011)
PLoS Genet
, vol.7
-
-
Dumitrescu, L.1
Carty, C.L.2
Taylor, K.3
Schumacher, F.R.4
Hindorff, L.A.5
Ambite, J.L.6
Anderson, G.7
Best, L.G.8
Brown-Gentry, K.9
Buzkova, P.10
Carlson, C.S.11
Cochran, B.12
Cole, S.A.13
Devereux, R.B.14
Duggan, D.15
Eaton, C.B.16
Fornage, M.17
Franceschini, N.18
Haessler, J.19
Howard, B.V.20
Johnson, K.C.21
Laston, S.22
Kolonel, L.N.23
Lee, E.T.24
Maccluer, J.W.25
Manolio, T.A.26
Pendergrass, S.A.27
Quibrera, M.28
Shohet, R.V.29
Wilkens, L.R.30
Haiman, C.A.31
Le, M.L.32
Buyske, S.33
Kooperberg, C.34
North, K.E.35
Crawford, D.C.36
more..
-
20
-
-
34247585477
-
A simple and improved correction for population stratification in case-control studies
-
Epstein, M.P., Allen, A.S., and Satten, G.A. 2007. A simple and improved correction for population stratification in case-control studies. Am. J. Hum. Genet. 80:921-930.
-
(2007)
Am. J. Hum. Genet.
, vol.80
, pp. 921-930
-
-
Epstein, M.P.1
Allen, A.S.2
Satten, G.A.3
-
21
-
-
0041817568
-
Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
-
Falush, D., Stephens, M.,Pritchard, J.K. 2003. Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies. Genetics 164:1567-1587.
-
(2003)
Genetics
, vol.164
, pp. 1567-1587
-
-
Falush, D.1
Stephens, M.2
Pritchard, J.K.3
-
22
-
-
34548134145
-
A whole-genome association study of major determinants for host control of HIV-1
-
Fellay, J., Shianna, K.V., Ge, D., Colombo, S., Ledergerber, B., Weale, M., Zhang, K., Gumbs, C., Castagna, A., Cossarizza, A., Cozzi-Lepri, A., De, L.A., Easterbrook, P., Francioli, P., Mallal, S., Martinez-Picado, J., Miro, J.M., Obel, N., Smith, J.P.,Wyniger, J., Descombes, P., Antonarakis, S.E., Letvin, N.L., McMichael, A.J., Haynes, B.F., Telenti, A., and Goldstein, D.B. 2007. A whole-genome association study of major determinants for host control of HIV-1. Science 317:944-947.
-
(2007)
Science
, vol.317
, pp. 944-947
-
-
Fellay, J.1
Shianna, K.V.2
Ge, D.3
Colombo, S.4
Ledergerber, B.5
Weale, M.6
Zhang, K.7
Gumbs, C.8
Castagna, A.9
Cossarizza, A.10
Cozzi-Lepri, A.11
De, L.A.12
Easterbrook, P.13
Francioli, P.14
Mallal, S.15
Martinez-Picado, J.16
Miro, J.M.17
Obel, N.18
Smith, J.P.19
Wyniger, J.20
Descombes, P.21
Antonarakis, S.E.22
Letvin, N.L.23
McMichael, A.J.24
Haynes, B.F.25
Telenti, A.26
Goldstein, D.B.27
more..
-
23
-
-
12144285594
-
Assessing the impact of population stratification on genetic association studies
-
Freedman, M.L., Reich, D., Penney, K.L., McDonald, G.J.,Mignault, A.A., Patterson, N., Gabriel, S.B., Topol, E.J., Smoller, J.W., Pato, C.N., Pato, M.T., Petryshen, T.L., Kolonel, L.N., Lander, E.S., Sklar, P., Henderson, B., Hirschhorn, J.N., and Altshuler, D. 2004. Assessing the impact of population stratification on genetic association studies. Nat. Genet. 36:388-393.
-
(2004)
Nat. Genet.
, vol.36
, pp. 388-393
-
-
Freedman, M.L.1
Reich, D.2
Penney, K.L.3
McDonald, G.J.4
Mignault, A.A.5
Patterson, N.6
Gabriel, S.B.7
Topol, E.J.8
Smoller, J.W.9
Pato, C.N.10
Pato, M.T.11
Petryshen, T.L.12
Kolonel, L.N.13
Lander, E.S.14
Sklar, P.15
Henderson, B.16
Hirschhorn, J.N.17
Altshuler, D.18
-
24
-
-
79960644426
-
Association study by genetic clustering detects multiple inflammatory response loci in non-inbred mice
-
Galvan, A., Vorraro, F., Cabrera,W., Ribeiro, O.G., Starobinas, N., Jensen, J.R., Dos Santos, C.P., De, F.M., Gao, X., Ibanez, O.C., and Dragani, T.A 2011. Association study by genetic clustering detects multiple inflammatory response loci in non-inbred mice. Genes Immun. 12:390-394.
-
(2011)
Genes Immun
, vol.12
, pp. 390-394
-
-
Galvan, A.1
Vorraro, F.2
Cabrera, W.3
Ribeiro, O.G.4
Starobinas, N.5
Jensen, J.R.6
Dos Santos, C.P.7
De, F.M.8
Gao, X.9
Ibanez, O.C.10
Dragani, T.A.11
-
25
-
-
66749139020
-
Using allele sharing distance for detecting human population stratification
-
Gao, X. and Martin, E.R. 2009. Using allele sharing distance for detecting human population stratification. Hum. Hered. 68:182-191.
-
(2009)
Hum. Hered.
, vol.68
, pp. 182-191
-
-
Gao, X.1
Martin, E.R.2
-
26
-
-
34547684591
-
Human population structure detection via multilocus genotype clustering
-
Gao, X. and Starmer, J. 2007. Human population structure detection via multilocus genotype clustering. BMC Genet. 8:34.
-
(2007)
BMC Genet
, vol.8
, pp. 34
-
-
Gao, X.1
Starmer, J.2
-
27
-
-
79961091828
-
Demographic history and rare allele sharing among human populations
-
Gravel, S., Henn, B.M., Gutenkunst, R.N., Indap, A.R., Marth, G.T., Clark, A.G., Yu, F., Gibbs, R.A., and Bustamante, C.D. 2011. Demographic history and rare allele sharing among human populations. Proc.Natl. Acad. Sci.U.S.A. 108:11983-11988.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 11983-11988
-
-
Gravel, S.1
Henn, B.M.2
Gutenkunst, R.N.3
Indap, A.R.4
Marth, G.T.5
Clark, A.G.6
Yu, F.7
Gibbs, R.A.8
Bustamante, C.D.9
-
28
-
-
84969578917
-
Inbreeding, Population Subdivision, and Migration. Principles of Population Genetics
-
Hartl, D.L. andClark,A.G. 2007. Inbreeding, Population Subdivision, and Migration. Principles of Population Genetics, 4 edn. Sinauer Associates, Inc., Sunderland, Massachusetts, pp. 257-311.
-
(2007)
4 edn. Sinauer Associates, Inc., Sunderland, Massachusetts
, pp. 257-311
-
-
Hartl, D.L.1
Clark, A.G.2
-
29
-
-
0037648359
-
-
Hoggart, C.J., Parra, E.J., Shriver, M.D., Bonilla, C., Kittles, R.A., Clayton, D.G., and McKeigue, P.M. 2003. Control of confounding of genetic associations in stratified populations. Am. J. Hum. Genet. 72:1492-1504.
-
(2003)
Am. J. Hum. Genet.
, vol.72
, pp. 1492-1504
-
-
Hoggart, C.J.1
Parra, E.J.2
Shriver, M.D.3
Bonilla, C.4
Kittles, R.A.5
Clayton, D.G.6
McKeigue, P.M.7
-
30
-
-
2342544848
-
Design and analysis of admixture mapping studies
-
Hoggart, C.J., Shriver,M.D., Kittles, R.A., Clayton, D.G., and McKeigue, P.M. 2004. Design and analysis of admixture mapping studies. Am. J. Hum. Genet. 74:965-978.
-
(2004)
Am. J. Hum. Genet.
, vol.74
, pp. 965-978
-
-
Hoggart, C.J.1
Shriver, M.D.2
Kittles, R.A.3
Clayton, D.G.4
McKeigue, P.M.5
-
31
-
-
67349176068
-
Genetics in geographically structured populations: defining, estimating and interpreting F(ST)
-
Holsinger, K.E. and Weir, B.S. 2009. Genetics in geographically structured populations: defining, estimating and interpreting F(ST). Nat. Rev. Genet. 10:639-650.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 639-650
-
-
Holsinger, K.E.1
Weir, B.S.2
-
32
-
-
33644824316
-
Case-control association tests correcting for population stratification
-
Kohler, K. and Bickeboller, H. 2006. Case-control association tests correcting for population stratification. Ann. Hum. Genet. 70:98-115.
-
(2006)
Ann. Hum. Genet.
, vol.70
, pp. 98-115
-
-
Kohler, K.1
Bickeboller, H.2
-
33
-
-
40749116962
-
Comment on a simple and improved correction for population stratification
-
Lee, S., Sullivan, P.F., Zou, F., and Wright, F.A. 2008. Comment on a simple and improved correction for population stratification.Am. J. Hum. Genet. 82:524-526.
-
(2008)
Am. J. Hum. Genet.
, vol.82
, pp. 524-526
-
-
Lee, S.1
Sullivan, P.F.2
Zou, F.3
Wright, F.A.4
-
34
-
-
0347361674
-
Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data
-
Li, N. and Stephens, M. 2003. Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data. Genetics 165:2213-2233.
-
(2003)
Genetics
, vol.165
, pp. 2213-2233
-
-
Li, N.1
Stephens, M.2
-
35
-
-
42149109325
-
Improved correction for population stratification in genome-wide association studies by identifying hidden population structures
-
Li, Q. and Yu, K. 2008. Improved correction for population stratification in genome-wide association studies by identifying hidden population structures. LI2008. Genet. Epidemiol. 32:215-226.
-
(2008)
LI2008. Genet. Epidemiol.
, vol.32
, pp. 215-226
-
-
Li, Q.1
Yu, K.2
-
36
-
-
2442585696
-
The effects of human population structure on large genetic association studies
-
Marchini, J., Cardon, L.R., Phillips, M.S., and Donnelly, P. 2004. The effects of human population structure on large genetic association studies. Nat. Genet. 36:512-517.
-
(2004)
Nat. Genet.
, vol.36
, pp. 512-517
-
-
Marchini, J.1
Cardon, L.R.2
Phillips, M.S.3
Donnelly, P.4
-
37
-
-
0242718698
-
Iteratively reweighted partial least squares estimation for generalized linear regression
-
Marx,B.D. 1996. Iteratively reweighted partial least squares estimation for generalized linear regression. Technometrics 38:374-381.
-
(1996)
Technometrics
, vol.38
, pp. 374-381
-
-
Marx, B.D.1
-
38
-
-
0018080152
-
Synthetic maps of human gene frequencies in Europeans
-
Menozzi, P., Piazza, A., and Cavalli-Sforza, L. 1978. Synthetic maps of human gene frequencies in Europeans. Science 201:786-792.
-
(1978)
Science
, vol.201
, pp. 786-792
-
-
Menozzi, P.1
Piazza, A.2
Cavalli-Sforza, L.3
-
39
-
-
69949160789
-
SNP selection and multidimensional scaling to quantify population structure
-
Miclaus, K., Wolfinger, R., and Czika, W. 2009. SNP selection and multidimensional scaling to quantify population structure. Genet. Epidemiol. 33:488-496.
-
(2009)
Genet. Epidemiol.
, vol.33
, pp. 488-496
-
-
Miclaus, K.1
Wolfinger, R.2
Czika, W.3
-
40
-
-
6344244729
-
Statistical tests for admixture mapping with case-control and cases-only data
-
Montana, G. and Pritchard, J.K. 2004. Statistical tests for admixture mapping with case-control and cases-only data. Am. J.Hum. Genet. 75:771-789.
-
(2004)
Am. J. Hum. Genet.
, vol.75
, pp. 771-789
-
-
Montana, G.1
Pritchard, J.K.2
-
41
-
-
0030776801
-
Multilocus genotypes, a tree of individuals, and human evolutionary history
-
Mountain, J.L. and Cavalli-Sforza, L.L. 1997. Multilocus genotypes, a tree of individuals, and human evolutionary history. Am. J. Hum. Genet. 61:705-718.
-
(1997)
Am. J. Hum. Genet.
, vol.61
, pp. 705-718
-
-
Mountain, J.L.1
Cavalli-Sforza, L.L.2
-
42
-
-
55549115654
-
Genes mirror geography within Europe
-
Novembre, J., Johnson, T., Bryc, K., Kutalik, Z., Boyko, A.R., Auton, A., Indap, A., King, K.S., Bergmann, S., Nelson, M.R., Stephens, M., and Bustamante, C.D. 2008. Genes mirror geography within Europe. Nature 456:98-101.
-
(2008)
Nature
, vol.456
, pp. 98-101
-
-
Novembre, J.1
Johnson, T.2
Bryc, K.3
Kutalik, Z.4
Boyko, A.R.5
Auton, A.6
Indap, A.7
King, K.S.8
Bergmann, S.9
Nelson, M.R.10
Stephens, M.11
Bustamante, C.D.12
-
43
-
-
66349088624
-
Inference of locus-specific ancestry in closely related populations
-
Pasaniuc, B., Sankararaman, S., Kimmel, G., and Halperin, E. 2009. Inference of locus-specific ancestry in closely related populations. Bioinformatics 25:i213-i221.
-
(2009)
Bioinformatics
, vol.25
-
-
Pasaniuc, B.1
Sankararaman, S.2
Kimmel, G.3
Halperin, E.4
-
44
-
-
79955578094
-
Enhanced statistical tests for GWAS in admixed populations: Assessment using African Americans from CARe and a Breast Cancer Consortium
-
Pasaniuc, B., Zaitlen, N., Lettre, G., Chen, G.K., Tandon, A., Kao, W.H., Ruczinski, I., Fornage, M., Siscovick, D.S., Zhu, X., Larkin, E., Lange, L.A., Cupples, L.A., Yang, Q., Akylbekova, E.L., Musani, S.K., Divers, J., Mychaleckyj, J., Li, M., Papanicolaou, G.J., Millikan, R.C., Ambrosone, C.B., John, E.M., Bernstein, L., Zheng, W., Hu, J.J., Ziegler, R.G., Nyante, S.J., Bandera, E.V., Ingles, S.A., Press, M.F., Chanock, S.J., Deming, S.L., Rodriguez-Gil, J.L., Palmer, C.D., Buxbaum, S., Ekunwe, L., Hirschhorn, J.N., Henderson, B.E., Myers, S., Haiman, C.A., Reich, D., Patterson, N.,Wilson, J.G., and Price, A.L. 2011. Enhanced statistical tests for GWAS in admixed populations: Assessment using African Americans from CARe and a Breast Cancer Consortium. PLoS Genet. 7:e1001371.
-
(2011)
PLoS Genet
, vol.7
-
-
Pasaniuc, B.1
Zaitlen, N.2
Lettre, G.3
Chen, G.K.4
Tandon, A.5
Kao, W.H.6
Ruczinski, I.7
Fornage, M.8
Siscovick, D.S.9
Zhu, X.10
Larkin, E.11
Lange, L.A.12
Cupples, L.A.13
Yang, Q.14
Akylbekova, E.L.15
Musani, S.K.16
Divers, J.17
Mychaleckyj, J.18
Li, M.19
Papanicolaou, G.J.20
Millikan, R.C.21
Ambrosone, C.B.22
John, E.M.23
Bernstein, L.24
Zheng, W.25
Hu, J.J.26
Ziegler, R.G.27
Nyante, S.J.28
Bandera, E.V.29
Ingles, S.A.30
Press, M.F.31
Chanock, S.J.32
Deming, S.L.33
Rodriguez-Gil, J.L.34
Palmer, C.D.35
Buxbaum, S.36
Ekunwe, L.37
Hirschhorn, J.N.38
Henderson, B.E.39
Myers, S.40
Haiman, C.A.41
Reich, D.42
Patterson, N.43
Wilson, J.G.44
Price, A.L.45
more..
-
45
-
-
2342622086
-
Methods for high-density admixture mapping of disease genes
-
Patterson, N., Hattangadi, N., Lane, B., Lohmueller, K.E., Hafler, D.A., Oksenberg, J.R., Hauser, S.L., Smith, M.W., O'Brien, S.J., Altshuler, D., Daly, M.J., and Reich, D. 2004. Methods for high-density admixture mapping of disease genes. Am. J. Hum. Genet. 74:979-1000.
-
(2004)
Am. J. Hum. Genet.
, vol.74
, pp. 979-1000
-
-
Patterson, N.1
Hattangadi, N.2
Lane, B.3
Lohmueller, K.E.4
Hafler, D.A.5
Oksenberg, J.R.6
Hauser, S.L.7
Smith, M.W.8
O'Brien, S.J.9
Altshuler, D.10
Daly, M.J.11
Reich, D.12
-
46
-
-
33746512512
-
Principal components analysis corrects for stratification in genome-wide association studies
-
Price, A.L., Patterson, N.J., Plenge, R.M., Weinblatt, M.E., Shadick, N.A., and Reich, D. 2006. Principal components analysis corrects for stratification in genome-wide association studies. Nat. Genet. 38:904-909.
-
(2006)
Nat. Genet.
, vol.38
, pp. 904-909
-
-
Price, A.L.1
Patterson, N.J.2
Plenge, R.M.3
Weinblatt, M.E.4
Shadick, N.A.5
Reich, D.6
-
47
-
-
67651225410
-
Sensitive detection of chromosomal segments of distinct ancestry in admixed populations
-
Price, A.L., Tandon, A., Patterson, N.,Barnes, K.C., Rafaels, N., Ruczinski, I., Beaty, T.H., Mathias, R., Reich, D., and Myers, S. 2009. Sensitive detection of chromosomal segments of distinct ancestry in admixed populations. PLoS Genet. 5:e1000519.
-
(2009)
PLoS Genet
, vol.5
-
-
Price, A.L.1
Tandon, A.2
Patterson, N.3
Barnes, K.C.4
Rafaels, N.5
Ruczinski, I.6
Beaty, T.H.7
Mathias, R.8
Reich, D.9
Myers, S.10
-
48
-
-
77953811255
-
New approaches to population stratification in genome-wide association studies
-
Price, A.L., Zaitlen, N.A., Reich, D., and Patterson, N. 2010. New approaches to population stratification in genome-wide association studies. Nat. Rev. Genet. 11:459-463.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 459-463
-
-
Price, A.L.1
Zaitlen, N.A.2
Reich, D.3
Patterson, N.4
-
49
-
-
0034118493
-
Inference of population structure using multilocus genotype data
-
Pritchard, J.K., Stephens, M., and Donnelly, P. 2000a. Inference of population structure using multilocus genotype data. Genetics 155:945-959.
-
(2000)
Genetics
, vol.155
, pp. 945-959
-
-
Pritchard, J.K.1
Stephens, M.2
Donnelly, P.3
-
50
-
-
0033926805
-
Association mapping in structured populations
-
Pritchard, J.K., Stephens, M., Rosenberg, N.A., and Donnelly, P. 2000b. Association mapping in structured populations. Am. J. Hum. Genet. 67:170-181.
-
(2000)
Am. J. Hum. Genet.
, vol.67
, pp. 170-181
-
-
Pritchard, J.K.1
Stephens, M.2
Rosenberg, N.A.3
Donnelly, P.4
-
51
-
-
34548292504
-
PLINK: A tool set for whole-genome association and population-based linkage analyses
-
Purcell, S., Neale, B., Todd-Brown, K., Thomas, L., Ferreira, M.A., Bender, D., Maller, J., Sklar, P., de Bakker, P.I., Daly, M.J., and Sham, P.C. 2007. PLINK: A tool set for whole-genome association and population-based linkage analyses. Am. J. Hum. Genet. 81:559-575.
-
(2007)
Am. J. Hum. Genet.
, vol.81
, pp. 559-575
-
-
Purcell, S.1
Neale, B.2
Todd-Brown, K.3
Thomas, L.4
Ferreira, M.A.5
Bender, D.6
Maller, J.7
Sklar, P.8
de Bakker, P.I.9
Daly, M.J.10
Sham, P.C.11
-
52
-
-
70349472875
-
Reconstructing Indian population history
-
Reich, D., Thangaraj, K., Patterson, N., Price, A.L., and Singh, L. 2009. Reconstructing Indian population history. Nature 461:489-494.
-
(2009)
Nature
, vol.461
, pp. 489-494
-
-
Reich, D.1
Thangaraj, K.2
Patterson, N.3
Price, A.L.4
Singh, L.5
-
53
-
-
41649121004
-
On the inference of ancestries in admixed populations
-
Sankararaman, S., Kimmel, G., Halperin, E., and Jordan, M.I. 2008a. On the inference of ancestries in admixed populations. Genome Res. 18:668-675.
-
(2008)
Genome Res
, vol.18
, pp. 668-675
-
-
Sankararaman, S.1
Kimmel, G.2
Halperin, E.3
Jordan, M.I.4
-
54
-
-
40749114839
-
Estimating local ancestry in admixed populations
-
Sankararaman, S., Sridhar, S., Kimmel, G., and Halperin, E. 2008b. Estimating local ancestry in admixed populations. Am. J. Hum. Genet. 82:290-303.
-
(2008)
Am. J. Hum. Genet.
, vol.82
, pp. 290-303
-
-
Sankararaman, S.1
Sridhar, S.2
Kimmel, G.3
Halperin, E.4
-
55
-
-
79960566302
-
New approaches to disease mapping in admixed populations
-
Seldin, M.F., Pasaniuc, B., and Price, A.L. 2011. New approaches to disease mapping in admixed populations. Nat. Rev. Genet. 12:523-528.
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 523-528
-
-
Seldin, M.F.1
Pasaniuc, B.2
Price, A.L.3
-
56
-
-
32044443597
-
Logistic regression protects against population structure in genetic association studies
-
Setakis, E., Stirnadel, H., and Balding, D.J. 2006. Logistic regression protects against population structure in genetic association studies. Genome Res. 16:290-296.
-
(2006)
Genome Res
, vol.16
, pp. 290-296
-
-
Setakis, E.1
Stirnadel, H.2
Balding, D.J.3
-
57
-
-
41649089607
-
Effect of genetic divergence in identifying ancestral origin using HAPAA
-
Sundquist,A., Fratkin, E.,Do, C.B., and Batzoglou, S. 2008. Effect of genetic divergence in identifying ancestral origin using HAPAA. Genome Res. 18:676-682.
-
(2008)
Genome Res
, vol.18
, pp. 676-682
-
-
Sundquist, A.1
Fratkin, E.2
Do, C.B.3
Batzoglou, S.4
-
58
-
-
33745228973
-
Reconstructing genetic ancestry blocks in admixed individuals
-
Tang, H., Coram,M.,Wang, P., Zhu, X., and Risch, N. 2006. Reconstructing genetic ancestry blocks in admixed individuals. Am. J. Hum. Genet. 79:1-12.
-
(2006)
Am. J. Hum. Genet.
, vol.79
, pp. 1-12
-
-
Tang, H.1
Coram, M.2
Wang, P.3
Zhu, X.4
Risch, N.5
-
59
-
-
76049108917
-
ROADTRIPS: Case-control association testing with partially or completely unknown population and pedigree structure
-
Thornton, T. and McPeek, M.S. 2010. ROADTRIPS: Case-control association testing with partially or completely unknown population and pedigree structure.Am. J. Hum. Genet. 86:172-184.
-
(2010)
Am. J. Hum. Genet.
, vol.86
, pp. 172-184
-
-
Thornton, T.1
McPeek, M.S.2
-
60
-
-
33845900450
-
Convergent adaptation of human lactase persistence in Africa and Europe
-
Tishkoff, S.A., Reed, F.A., Ranciaro, A., Voight, B.F., Babbitt, C.C., Silverman, J.S., Powell, K., Mortensen, H.M., Hirbo, J.B., Osman, M., Ibrahim, M., Omar, S.A., Lema, G., Nyambo, T.B., Ghori, J., Bumpstead, S., Pritchard, J.K., Wray, G.A., and Deloukas, P. 2007. Convergent adaptation of human lactase persistence in Africa and Europe. Nat. Genet. 39:31-40.
-
(2007)
Nat. Genet.
, vol.39
, pp. 31-40
-
-
Tishkoff, S.A.1
Reed, F.A.2
Ranciaro, A.3
Voight, B.F.4
Babbitt, C.C.5
Silverman, J.S.6
Powell, K.7
Mortensen, H.M.8
Hirbo, J.B.9
Osman, M.10
Ibrahim, M.11
Omar, S.A.12
Lema, G.13
Nyambo, T.B.14
Ghori, J.15
Bumpstead, S.16
Pritchard, J.K.17
Wray, G.A.18
Deloukas, P.19
-
61
-
-
66249116333
-
The genetic structure and history of Africans and African Americans
-
Tishkoff, S.A., Reed, F.A., Friedlaender, F.R., Ehret, C., Ranciaro, A., Froment, A., Hirbo, J.B., Awomoyi, A.A., Bodo, J.M., Doumbo, O., Ibrahim, M., Juma, A.T., Kotze, M.J., Lema, G., Moore, J.H., Mortensen, H., Nyambo, T.B., Omar, S.A., Powell, K., Pretorius, G.S., Smith, M.W., Thera, M.A., Wambebe, C., Weber, J.L., and Williams, S.M. 2009. The genetic structure and history of Africans and African Americans. Science 324:1035-1044.
-
(2009)
Science
, vol.324
, pp. 1035-1044
-
-
Tishkoff, S.A.1
Reed, F.A.2
Friedlaender, F.R.3
Ehret, C.4
Ranciaro, A.5
Froment, A.6
Hirbo, J.B.7
Awomoyi, A.A.8
Bodo, J.M.9
Doumbo, O.10
Ibrahim, M.11
Juma, A.T.12
Kotze, M.J.13
Lema, G.14
Moore, J.H.15
Mortensen, H.16
Nyambo, T.B.17
Omar, S.A.18
Powell, K.19
Pretorius, G.S.20
Smith, M.W.21
Thera, M.A.22
Wambebe, C.23
Weber, J.L.24
Williams, S.M.25
more..
-
62
-
-
53749084482
-
Preterm birth in Caucasians is associated with coagulation and inflammation pathway gene variants
-
Velez, D.R., Fortunato, S.J., Thorsen, P., Lombardi, S.J.,Williams, S.M., andMenon, R. 2008. Preterm birth in Caucasians is associated with coagulation and inflammation pathway gene variants. PLoS One 3:e3283.
-
(2008)
PLoS One
, vol.3
-
-
Velez, D.R.1
Fortunato, S.J.2
Thorsen, P.3
Lombardi, S.J.4
Williams, S.M.5
Menon, R.6
-
63
-
-
84982339813
-
Composition of populations from the perspective of the theory of heredity
-
Wahlund, S. 1928. Composition of populations from the perspective of the theory of heredity. Hereditas 11:65-105.
-
(1928)
Hereditas
, vol.11
, pp. 65-105
-
-
Wahlund, S.1
-
64
-
-
79951997040
-
Adjustment for local ancestry in genetic association analysis of admixed populations
-
Wang, X., Zhu, X., Qin, H., Cooper, R.S., Ewens, W.J., Li, C., and Li, M. 2011. Adjustment for local ancestry in genetic association analysis of admixed populations. Bioinformatics 27:670-677.
-
(2011)
Bioinformatics
, vol.27
, pp. 670-677
-
-
Wang, X.1
Zhu, X.2
Qin, H.3
Cooper, R.S.4
Ewens, W.J.5
Li, C.6
Li, M.7
-
65
-
-
0012145281
-
-
Genetic Data Analysis II 2nd ed. Sinauer Associates, Inc., Sunderland, Massachusetts
-
Weir,B.S. 1996. Population Structure. Genetic Data Analysis II, 2nd ed., pp 161-201. Sinauer Associates, Inc., Sunderland, Massachusetts.
-
(1996)
Population Structure
, pp. 161-201
-
-
Weir, B.S.1
-
66
-
-
0021566877
-
Estimating F-statistics for the analysis of populationstructure
-
Weir, B.S. and Cockerham, C.C. 1984. Estimating F-statistics for the analysis of populationstructure. Evolution 38:1358-1370.
-
(1984)
Evolution
, vol.38
, pp. 1358-1370
-
-
Weir, B.S.1
Cockerham, C.C.2
-
68
-
-
79960026939
-
Genome-wide local ancestry approach identifies genes and variants associated with chemotherapeutic susceptibility in African Americans
-
Wheeler, H.E., Gorsic, L.K., Welsh, M., Stark, A.L., Gamazon, E.R., Cox, N.J., and Dolan, M.E. 2011. Genome-wide local ancestry approach identifies genes and variants associated with chemotherapeutic susceptibility in African Americans. PLoS One 6:e21920.
-
(2011)
PLoS One
, vol.6
-
-
Wheeler, H.E.1
Gorsic, L.K.2
Welsh, M.3
Stark, A.L.4
Gamazon, E.R.5
Cox, N.J.6
Dolan, M.E.7
-
69
-
-
77957952236
-
Admixture mapping comes of age
-
Winkler, C.A., Nelson, G.W., and Smith, M.W. 2010. Admixture mapping comes of age. Annu. Rev. Genomics Hum. Genet. 11:65-89.
-
(2010)
Annu. Rev. Genomics Hum. Genet.
, vol.11
, pp. 65-89
-
-
Winkler, C.A.1
Nelson, G.W.2
Smith, M.W.3
-
70
-
-
0000929750
-
Systems of mating
-
Wright, S. 1921. Systems of mating. Genetics 6:111-178.
-
(1921)
Genetics
, vol.6
, pp. 111-178
-
-
Wright, S.1
-
71
-
-
0001771498
-
Evolution in Mendelian populations
-
Wright, S. 1931. Evolution in Mendelian populations. Genetics 16:97-159.
-
(1931)
Genetics
, vol.16
, pp. 97-159
-
-
Wright, S.1
-
72
-
-
17644416423
-
Practical population group assignment with selected informative markers: Characteristics and properties of Bayesian clustering via STRUCTURE
-
Yang, B.Z., Zhao, H.,Kranzler, H.R., and Gelernter, J. 2005. Practical population group assignment with selected informative markers: Characteristics and properties of Bayesian clustering via STRUCTURE. Genet. Epidemiol. 28:302-312.
-
(2005)
Genet. Epidemiol.
, vol.28
, pp. 302-312
-
-
Yang, B.Z.1
Zhao, H.2
Kranzler, H.R.3
Gelernter, J.4
-
73
-
-
54449089328
-
Comparison of population-based association study methods correcting for population stratification
-
Zhang, F., Wang, Y., and Deng, H.W. 2008. Comparison of population-based association study methods correcting for population stratification. PLoS One 3:e3392.
-
(2008)
PLoS One
, vol.3
-
-
Zhang, F.1
Wang, Y.2
Deng, H.W.3
-
74
-
-
2442688965
-
Linkage analysis of a complex disease through use of admixed populations
-
Zhu, X., Cooper, R.S., and Elston, R.C. 2004. Linkage analysis of a complex disease through use of admixed populations. Am. J. Hum. Genet. 74:1136-1153.
-
(2004)
Am. J. Hum. Genet.
, vol.74
, pp. 1136-1153
-
-
Zhu, X.1
Cooper, R.S.2
Elston, R.C.3
-
75
-
-
40749128980
-
A unified association analysis approach for family and unrelated samples correcting for stratification
-
Zhu, X., Li, S., Cooper, R.S., and Elston, R.C. 2008. A unified association analysis approach for family and unrelated samples correcting for stratification. Am. J. Hum. Genet. 82:352-365.
-
(2008)
Am. J. Hum. Genet.
, vol.82
, pp. 352-365
-
-
Zhu, X.1
Li, S.2
Cooper, R.S.3
Elston, R.C.4
|