메뉴 건너뛰기




Volumn 34, Issue 2, 2012, Pages 189-198

Characterization of Imcrop, a Mutator-like MITE family in the rice genome

Author keywords

Imcrop; Insertion polymorphism; Miniature inverted repeat transposable element (MITE); Rice

Indexed keywords

ARTICLE; CHROMOSOME 1; CHROMOSOME 3; CHROMOSOME 4; CONTROLLED STUDY; CROSS HYBRIDIZATION; CULTIVAR; GENE FREQUENCY; GENE INSERTION SEQUENCE; GENE LOCATION; GENETIC ANALYSIS; GENETIC LINKAGE; GENETIC POLYMORPHISM; GENETIC VARIABILITY; MUTATOR GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT GENOME; RICE; TRANSPOSON;

EID: 84863785328     PISSN: 19769571     EISSN: 20929293     Source Type: Journal    
DOI: 10.1007/s13258-011-0193-z     Document Type: Article
Times cited : (6)

References (39)
  • 1
    • 0026940433 scopus 로고
    • Tourist - A large family of small inverted repeat elements frequently associated with maize genes
    • Bureau TE and Wessler SR (1992) Tourist - a large family of small inverted repeat elements frequently associated with maize genes. Plant Cell 4:1283-1294.
    • (1992) Plant Cell , vol.4 , pp. 1283-1294
    • Bureau, T.E.1    Wessler, S.R.2
  • 2
    • 0037633476 scopus 로고    scopus 로고
    • Plant LTR-retrotransposons and MITEs: Control of transposition and impact on the evolution of plant genes and genomes
    • DOI 10.1016/S0378-1119(03)00557-2
    • Casacuberta JM and Santiago N (2003) Plant LTR-retrotransposons and MITEs: Control of transposition and impact on the evolution of plant genes and genomes. Gene 311:1-11. (Pubitemid 36830797)
    • (2003) Gene , vol.311 , Issue.1-2 , pp. 1-11
    • Casacuberta, J.M.1    Santiago, N.2
  • 3
    • 0036090123 scopus 로고    scopus 로고
    • Genome-wide distribution and potential regulatory functions of AtATE, a novel family of miniature inverted-repeat transposable elements in Arabidopsis thaliana
    • El Amrani A, Marie L, Ainouche A, Nicolas J, and Couee I (2002) Genome-wide distribution and potential regulatory functions of AtATE, a novel family of miniature inverted-repeat transposable elements in Arabidopsis thaliana. Mol. Genet. Genomics 267:459-471.
    • (2002) Mol. Genet. Genomics , vol.267 , pp. 459-471
    • El Amrani, A.1    Marie, L.2    Ainouche, A.3    Nicolas, J.4    Couee, I.5
  • 4
    • 0036250001 scopus 로고    scopus 로고
    • Plant transposable elements: Where genetics meets genomics
    • DOI 10.1038/nrg793
    • Feschotte C, Jiang N, and Wessler SR (2002) Plant transposable elements: Where genetics meets genomics. Nat. Rev. Genet. 3:329-341. (Pubitemid 34506715)
    • (2002) Nature Reviews Genetics , vol.3 , Issue.5 , pp. 329-341
    • Feschotte, C.1    Jiang, N.2    Wessler, S.R.3
  • 5
    • 0037295458 scopus 로고    scopus 로고
    • Genome-wide analysis of mariner-like transposable elements in rice reveals complex relationships with Stowaway miniature inverted repeat transposable elements (MITEs)
    • Feschotte C, Swamy L, and Wessler SR (2003) Genome-wide analysis of mariner-like transposable elements in rice reveals complex relationships with Stowaway miniature inverted repeat transposable elements (MITEs). Genetics 163:747-758. (Pubitemid 36314555)
    • (2003) Genetics , vol.163 , Issue.2 , pp. 747-758
    • Feschotte, C.1    Swamy, L.2    Wessler, S.R.3
  • 6
    • 70249138303 scopus 로고    scopus 로고
    • MITEs - The ultimate parasites
    • Gonzalez J and Petrov D (2009) MITEs - the ultimate parasites. Science 325:1352-1353.
    • (2009) Science , vol.325 , pp. 1352-1353
    • Gonzalez, J.1    Petrov, D.2
  • 8
    • 59749106750 scopus 로고    scopus 로고
    • Identification of a high frequency transposon induced by tissue culture, nDaiZ, a member of the hAT family in rice
    • Huang J, Zhang K, Shen Y, HuangZ, Li M, Tang D, Gu M, and Cheng Z (2009) Identification of a high frequency transposon induced by tissue culture, nDaiZ, a member of the hAT family in rice. Genomics 93:274-281.
    • (2009) Genomics , vol.93 , pp. 274-281
    • Huang, J.1    Zhang, K.2    Shen, Y.3    Huang, Z.4    Li, M.5    Tang, D.6    Gu, M.7    Cheng, Z.8
  • 9
    • 84907150192 scopus 로고    scopus 로고
    • The map-based sequence of the rice genome
    • IRGSP
    • IRGSP (2005) The map-based sequence of the rice genome. Nature 436:793-800.
    • (2005) Nature , vol.436 , pp. 793-800
  • 11
    • 1542321148 scopus 로고    scopus 로고
    • Using rice to understand the origin and amplification of miniature inverted repeat transposable elements (MITEs)
    • DOI 10.1016/j.pbi.2004.01.004, PII S136952660400007X
    • Jiang N, Feschotte C, Zhang XY, and Wessler SR (2004) Using rice to understand the origin and amplification of miniature inverted repeat transposable elements (MITEs). Curr. Opin. Plant Biol. 7:115-119. (Pubitemid 38308044)
    • (2004) Current Opinion in Plant Biology , vol.7 , Issue.2 , pp. 115-119
    • Jiang, N.1    Feschotte, C.2    Zhang, X.3    Wessler, S.R.4
  • 12
    • 1042280956 scopus 로고    scopus 로고
    • Transposable element annotation of the rice genome
    • DOI 10.1093/bioinformatics/bth019
    • Juretic N, Bureau TE, and Bruskiewich RM (2004) Transposable element annotation of the rice genome. Bioinformatics 20:155-160. (Pubitemid 38195672)
    • (2004) Bioinformatics , vol.20 , Issue.2 , pp. 155-160
    • Juretic, N.1    Bureau, T.E.2    Bruskiewich, R.M.3
  • 13
    • 34848876954 scopus 로고    scopus 로고
    • Helitrons on a roll: eukaryotic rolling-circle transposons
    • DOI 10.1016/j.tig.2007.08.004, PII S0168952507002703
    • Kapitonov VV and Jurka J (2007) Helitrons on a roll: Eukaryotic rolling-circle transposons. Trends Genet. 23:521-529. (Pubitemid 47503448)
    • (2007) Trends in Genetics , vol.23 , Issue.10 , pp. 521-529
    • Kapitonov, V.V.1    Jurka, J.2
  • 14
    • 33645227457 scopus 로고    scopus 로고
    • Self-synthesizing DNA transposons in eukaryotes
    • Kapitonov VV and Jurka J (2006) Self-synthesizing DNA transposons in eukaryotes. Proc. Natl. Acad. Sci. USA 103:4540-4545.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 4540-4545
    • Kapitonov, V.V.1    Jurka, J.2
  • 15
  • 16
    • 0346003772 scopus 로고    scopus 로고
    • The plant MITE mPing is mobilized in anther culture
    • DOI 10.1038/nature01218
    • Kikuchi K, Terauchi K, Wada M, and Hirano HY (2003) The plant MITE mPing is mobilized in anther culture. Nature 421:167-170. (Pubitemid 36090983)
    • (2003) Nature , vol.421 , Issue.6919 , pp. 167-170
    • Kikuchi, K.1    Terauchit, K.2    Wada, M.3    Hirano, H.-Y.4
  • 17
    • 56449094882 scopus 로고    scopus 로고
    • Role of miniature inverted repeat trans posable elements inserted into the promoter region of a carrot phenylalanine ammonia-lyase gene and its gene expression
    • Kimura S, Oyanagi M, Fukuda T, Ohno Y, Hongo C, Itoh Y, Koda T, and Ozeki Y (2008) Role of miniature inverted repeat trans posable elements inserted into the promoter region of a carrot phenylalanine ammonia-lyase gene and its gene expression. Plant Biotech. 25:473-481.
    • (2008) Plant Biotech. , vol.25 , pp. 473-481
    • Kimura, S.1    Oyanagi, M.2    Fukuda, T.3    Ohno, Y.4    Hongo, C.5    Itoh, Y.6    Koda, T.7    Ozeki, Y.8
  • 18
    • 33750831582 scopus 로고    scopus 로고
    • Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor
    • Kohany O, Gentles AJ, Hankus L, and Jurka J (2006) Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor. BMC Bioinformatics 7:474.
    • (2006) BMC Bioinformatics , vol.7 , pp. 474
    • Kohany, O.1    Gentles, A.J.2    Hankus, L.3    Jurka, J.4
  • 19
    • 61449173808 scopus 로고    scopus 로고
    • Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: New functional implications for MITEs
    • Kuang HH, Padmanabhan C, Li F, Kamei A, Bhaskar PB, Shu OY, Jiang JM, Buell CR, and Baker B (2009) Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: New functional implications for MITEs. Genome Res. 19:42-56.
    • (2009) Genome Res. , vol.19 , pp. 42-56
    • Kuang, H.H.1    Padmanabhan, C.2    Li, F.3    Kamei, A.4    Bhaskar, P.B.5    Shu, O.Y.6    Jiang, J.M.7    Buell, C.R.8    Baker, B.9
  • 21
    • 84898700125 scopus 로고    scopus 로고
    • Muataor and MULE transposons
    • Lisch D and Jiang N (2009) Muataor and MULE transposons. Maize Handbook 2:277-306.
    • (2009) Maize Handbook , vol.2 , pp. 277-306
    • Lisch, D.1    Jiang, N.2
  • 22
    • 51349111169 scopus 로고    scopus 로고
    • Isolation, analysis and marker utility of novel miniature inverted repeat transposable elements from the barley genome
    • Lyons M, Cardle L, Rostoks N, Waugh R, and Flavell A (2008) Isolation, analysis and marker utility of novel miniature inverted repeat transposable elements from the barley genome. Mol. Genet. Genomics 280:275-285.
    • (2008) Mol. Genet. Genomics , vol.280 , pp. 275-285
    • Lyons, M.1    Cardle, L.2    Rostoks, N.3    Waugh, R.4    Flavell, A.5
  • 23
    • 0019321718 scopus 로고
    • Rapid isolation of high molecular- Weight plant DNA
    • Murray MG and Thopson WF (1980) Rapid isolation of high molecular- weight plant DNA. Nucleic Acids Res. 8:4321-4325.
    • (1980) Nucleic Acids Res. , vol.8 , pp. 4321-4325
    • Murray, M.G.1    Thopson, W.F.2
  • 27
    • 54249135347 scopus 로고    scopus 로고
    • A genome-wide view of miniature inverted-repeat transposable elements (MITEs) in rice, Oryza sativa ssp. japonica
    • Oki N, Yano K, Okumoto Y, Tsukiyama T, Teraishi M, and Tanisaka T (2008) A genome-wide view of miniature inverted-repeat transposable elements (MITEs) in rice, Oryza sativa ssp. japonica. Genes Genet. Syst. 83:321-329.
    • (2008) Genes Genet. Syst. , vol.83 , pp. 321-329
    • Oki, N.1    Yano, K.2    Okumoto, Y.3    Tsukiyama, T.4    Teraishi, M.5    Tanisaka, T.6
  • 28
    • 0346494835 scopus 로고    scopus 로고
    • The TIGR Plant Repeat Databases: A collective resource for the identification of repetitive sequences in plants
    • Ouyang S and Buell CR (2004) The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants. Nucleic Acids Res. 32:D360-3. (Pubitemid 38081677)
    • (2004) Nucleic Acids Research , vol.32 , Issue.DATABASE ISS.
    • Ouyang, S.1    Buell, C.R.2
  • 30
    • 0035142211 scopus 로고    scopus 로고
    • Survey of transposable elements from rice genomic sequences
    • DOI 10.1046/j.1365-313X.2001.00945.x
    • Turcotte K, Srinivasan S, and Bureau T (2001) Survey of transposable elements from rice genomic sequences. Plant J. 25:169-179. (Pubitemid 32122751)
    • (2001) Plant Journal , vol.25 , Issue.2 , pp. 169-179
    • Turcotte, K.1    Srinivasan, S.2    Bureau, T.3
  • 31
    • 0029583698 scopus 로고
    • LTR-retrotransposons and MITEs: Important players in the evolution of plant genomes
    • DOI 10.1016/0959-437X(95)80016-X
    • Wessler SR, Bureau TE, and White SE (1995) LTR-retrotransposons and MITEs: important players in the evolution of plant genomes. Curr. Opin. Genet. Dev. 5:814-821. (Pubitemid 26003886)
    • (1995) Current Opinion in Genetics and Development , vol.5 , Issue.6 , pp. 814-821
    • Wessler, S.R.1    Bureau, T.E.2    White, S.E.3
  • 33
    • 0037370452 scopus 로고    scopus 로고
    • MDM-1 and MDM-2: Two Mutator-derived MITE families in rice
    • DOI 10.1007/s00239-002-2397-y
    • Yang G and Hall TC (2003) MDM-1 and MDM-2: Two Mutator-derived MITE families in rice. J. Mol. Evol. 56:255-264. (Pubitemid 36279031)
    • (2003) Journal of Molecular Evolution , vol.56 , Issue.3 , pp. 255-264
    • Yang, G.1    Hall, T.C.2
  • 34
    • 31344455118 scopus 로고    scopus 로고
    • A two-edged role for the transposable element Kiddo in the rice ubiquitin2 promoter
    • DOI 10.1105/tpc.104.030528
    • Yang G, Lee YH, Jiang YM, Shi XY, Kertbundit S, and Hall TC (2005) A two-edged role for the transposable element Kiddo in the rice ubiquitin2 promoter. Plant Cell 17:1559-1568. (Pubitemid 43138204)
    • (2005) Plant Cell , vol.17 , Issue.5 , pp. 1559-1568
    • Yang, G.1    Lee, Y.-H.2    Jiang, Y.3    Shi, X.4    Kertbundit, S.5    Hall, T.C.6
  • 35
    • 70249087648 scopus 로고    scopus 로고
    • Tuned for transposition: Molecular determinants underlying the hyperactivity of a Stowaway MITE
    • Yang G, Nagel DH, Feschotte C, Hancock CN, and Wessler SR (2009) Tuned for transposition: Molecular determinants underlying the hyperactivity of a Stowaway MITE. Science 325:1391-1394.
    • (2009) Science , vol.325 , pp. 1391-1394
    • Yang, G.1    Nagel, D.H.2    Feschotte, C.3    Hancock, C.N.4    Wessler, S.R.5
  • 38
    • 1642343363 scopus 로고    scopus 로고
    • PIF- and Pong-Like Transposable Elements: Distribution, Evolution and Relationship with Tourist-Like Miniature Inverted-Repeat Transposable Elements
    • DOI 10.1534/genetics.166.2.971
    • Zhang XY, Jiang N, Feschotte C, and Wessler SR (2004) PIF- and Pong-like transposable elements: Distribution, evolution and relationship with Tourist-like miniature inverted-repeat transposable elements. Genetics 166:971-986. (Pubitemid 38391755)
    • (2004) Genetics , vol.166 , Issue.2 , pp. 971-986
    • Zhang, X.1    Jiang, N.2    Feschotte, C.3    Wessler, S.R.4
  • 39
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31(13):3406-3415.
    • (2003) Nucleic Acids Res. , vol.31 , Issue.13 , pp. 3406-3415
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.