Molecular typing of Coxiella burnetii (Q Fever)

Advances in Experimental Medicine and Biology

Volumn 984, Issue , 2012, Pages 381-396

  Massung, Robert F ^a   Cutler, Sally J ^a   Frangoulidis, Dimitrios ^a  

^a BUNDESWEHR INSTITUTE OF MICROBIOLOGY   (Germany)

Author keywords

Coxiella burnetii; Molecular epidemiology; Q fever; Typing

Indexed keywords

ISOCITRATE DEHYDROGENASE;

ARTICLE; BACTERIAL GENE; BACTERIAL GENETICS; BACTERIUM ISOLATE; BIOLOGICAL WARFARE; COM 1 GENE; COXIELLA BURNETII; GENE SEQUENCE; GENETIC VARIABILITY; GENOTYPE; ICD GENE; MICROBIAL DIVERSITY; MOLECULAR EPIDEMIOLOGY; MOLECULAR TYPING; MUCZ GENE; MULTILOCUS SEQUENCE TYPING; NONHUMAN; OPEN READING FRAME; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PULSED FIELD GEL ELECTROPHORESIS; Q FEVER; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SEQUENCE HOMOLOGY; SINGLE NUCLEOTIDE POLYMORPHISM; SPECIES DISTRIBUTION; VARIABLE NUMBER OF TANDEM REPEAT;

ANIMALS; COXIELLA BURNETII; DNA, BACTERIAL; GENOTYPE; HUMANS; MOLECULAR TYPING; Q FEVER;

COXIELLA; COXIELLA BURNETII;

EID: 84863764876     PISSN: 00652598     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-94-007-4315-1_19     Document Type: Article

References (64)

1. Amitai Z, Bromberg M, Bernstein M, Raveh D, Keysary A, David D, Pitlik S, Swerdlow D, massung R, Rzotkiewicz S, Halutz O (2010) A large Q fever outbreak in an urban school in Central Israel. Clin Infect Dis 50:1433-1438
2. Arricau-Bouvery N, Hauck Y, Bejaoui A, Frangoulidis D, Bodier CC, Souriau A, Meyer H, Neubauer H, Rodolakis A, Vergnaud G (2006) Molecular characterization of Coxiella burnetii isolates by infrequent restriction site-PCR and MLVA typing. BMC Microbiol. doi: 10.1186/1471-2180-6-38
3. Bamberg WM, Pape WJ, Beebe JL, Nevin-Woods C, Ray W, maguire H, Nucci J, massung RF, Gershman K (2007) Outbreak of Q fever associated with a horse-boarding ranch, Colorado, 2005. Vector Borne Zoonotic Dis 7:394-402
4. Barlow J, Rauch B et al (2008) Association between Coxiella burnetii shedding in milk and subclinical mastitis in dairy cattle. Vet Res 39:23
5. Beare PA, Samuel JE, Howe D, Virtaneva K, Porcella SF, Heinzen RA (2006) Genetic diversity of the Q fever agent, Coxiella burnetii , assessed by microarray-based whole-genome comparisons. J Bacteriol 188:2309-2324
6. Beare PA, Unsworth N, Andoh M, Voth DE, Omsland A, Gilk SD, Williams KP, Sobral BW, Kupko JJ 3rd, Porcella SF, Samuel JE, Heinzen RA (2009) Comparative genomics reveal extensive transposon-mediated genomic plasticity and diversity among potential effector proteins within the genus Coxiella . Infect Immun 77:642-656
7. Berri M, Rousset E et al (2007) Goats may experience reproductive failures and shed Coxiella burnetii at two successive parturitions after a Q fever infection. Res Vet Sci 83:47-52
8. Brezina R (1958) A change in the virulence of the Henzerling strain of Coxiella burneti during passage in white mice. Acta Virol 2:220-227
9. Cerf O, Condron R (2006) Coxiella burnetii and milk pasteurization: an early application of the precautionary principle? Epidemiol Infect 134:946-951
10. Chen PE, Willner KM, Butani A, Dorsey S, George M, Stewart A, Lentz SM, Cook CE, Akmal A, Price LB, Keim PS, mateczun A, Brahmbhatt TN, Bishop-Lilly KA, Zwick ME, Read TD, Sozhamannan S (2010) Rapid identi fication of genetic modi fications in Bacillus anthracis using whole genome draft sequences generated by 454 pyrosequencing. PLoS One 5(8): pii: e12397
11. Chmielewski T, Sidi-Boumedine K, Duquesne V, Podsiadly E, Thiéry R, Tylewska-Wierzbanowska S (2009) Molecular epidemiology of Q fever in Poland. Pol J Microbiol 58:9-13
12. Cooley MB, Carychao D, Nguyen K, Whitehand L, mandrell R (2010) Effects of environmental stress on stability of tandem repeats in Escherichia coli O157:H7. Appl Environ Microbiol 76:3398-3400
13. Denison A, Thompson H, massung RF (2007) IS1111 insertion sequences of Coxiella burnetii: characterization and use for repetitive element PCR-based differentiation of Coxiella burnetii isolates. BMC Microbiol. doi: 10.1186/1471-2180-7-91
14. Drake JW, Charlesworth B, Charlesworth D, Crow JF (1998) Rates of spontaneous mutation. Genetics 148:1667-1686, Review
15. Driscoll JR (2009) Spoligotyping for molecular epidemiology of the Mycobacterium tuberculosis complex. Methods Mol Biol 551:117-128
16. Fournier P, marrie T, Raoult D (1998) Diagnosis of Q fever. J Clin Microbiol 36:1823-1834
17. Frazier ME, Heinzen RA, Stiegler GL, mallavia LP (1991) Physical mapping of the Coxiella burnetii genome. Acta Virol 35(6):511-518
18. Fretz R, Schaeren W et al (2007) Screening of various foodstuffs for occurrence of Coxiella burnetii in Switzerland. Int J Food Microbiol 116:414-418
19. Genig VA (1960) Attenuated variant "M" of Rickettsia burneti as a possible live vaccine against Q-fever. Vestn Akad Med Nauk SSSR 15(2):46-57 [In Russian]
20. Glazunova O, Roux V, Freylikman O, Sekeyova Z, Fournous G, Tyczka J, Tokarevich N, Kovacava E, marrie T, Raoult D (2005) Coxiella burnetii genotyping. Emerg Infect Dis 11:1211-1217
21. Hanczaruk M, Meyer H, Frangoulidis D (2009) A genotyping system for Coxiella burnetii based on IS1111-elements. Paper presented at the 61rd annual meeting of the German Society of Hygiene and Microbiology (DGHM), University of Göttingen, Germany, 20-23 Sept 2009
22. Heinzen R, Stiegler GL, Whiting LL, Schmitt SA, mallavia LP, Frazier ME (1990) Use of pulsed field gel electrophoresis to differentiate Coxiella burnetii strains. Ann N Y Acad Sci 590:504-513
23. Hendrix L, Samuel J, mallavia L (1991) Differentiation of Coxiella burnetii isolates by analysis of restriction-endonuclease-digested DNA separated by SDS-PAGE. J Gen Microbiol 137:269-276
24. Huijsmans CJJ, Schellekens JJA, Wever PC et al (2011) Single-nucleotide-polymorphisms genotyping of Coxiella burnetii during a Q fever outbreak in the Netherlands. Appl Environ Microbiol 77:2051-2057
25. Jäger C, Willems H, Thiele D, Baljer G (1998) Molecular characterization of Coxiella burnetii isolates. Epidemiol Infect 120:157-164
26. Jäger C, Lautenschläger S, Willems H, Baljer G (2002) Coxiella burnetii plasmid types QpDG and QpH1 are closely related and likely identical. Vet Microbiol 89:161-166
27. Jernigan DB, Raghunathan PL, Bell BP, Brechner R, Bresnitz EA, Butler JC, Cetron M, Cohen M, Doyle T, Fischer M, Greene C, Grif fith KS, Guarner J, Hadler JL, Hayslett JA, Meyer R, Petersen LR, Phillips M, Pinner R, Popovic T, Quinn CP, Reefhuis J, Reissman D, Rosenstein N, Schuchat A, Shieh WJ, Siegal L, Swerdlow DL, Tenover FC, Traeger M, Ward JW, Weisfuse I, Wiersma S, Yeskey K, Zaki S, Ashford DA, Perkins BA, Ostroff S, Hughes J, Fleming D, Koplan JP, Gerberding JL (2002) Investigation of bioterrorism-related anthrax, United States, 2001: epidemiologic findings. Emerg Infect Dis 8:1019-1028
28. Jordan IK, Rogozin IB, Wolf YI, Koonin EV (2002) Microevolutionary genomics of bacteria. Theor Popul Biol 61:435-447
29. Keim P, Van Ert MN, Pearson T, Vogler AJ, Huynh LY, Wagner DW (2004) Anthrax molecular epidemiology and forensics: using the appropriate marker for different evolutionary scales. Infect Genet Evol 4:205-213
30. Kersh GJ, Wolfe TM, Fitzpatrick KA, Candee AJ, Oliver LD, Patterson NE, Self JS, Priestley RA, Loftis AD, massung RF (2010) Presence of Coxiella burnetii DNA in the environment of the United States, 2006 to 2008. Appl Environ Microbiol 76:4469-4475
31. Klaassen CHW, Nabuurs-Franssen MH, Tilburg JJHC, Hamans maWM, Horrevorts AM (2009) Multigenotype Q fever outbreak, the Netherlands. Emerg Infect Dis 15:613-614
32. Lautenschläger S, Willems H, Jäger C, Baljer G (2000) Sequencing and characterization of the cryptic plasmid QpRS from Coxiella burnetii . Plasmid 44:85-88
33. Li B, Kadura I, Fu D, Watson DE (2004) Genotyping with TaqMAMA. Genomics 83:311-320
34. Loftis AD, Priestley RA, massung RF (2010) Detection of Coxiella burnetii in commercially available raw milk from the United States. Foodborne Pathog Dis 7(12):1453-1456
35. madariaga M, Rezai K, Trenholme GM, Weinstein RA (2003) Q fever: a biological weapon in your backyard. Lancet Infect Dis 3:709-721
36. malorny B, Junker E, Helmuth R (2008) Multi-locus variable-number tandem repeat analysis for outbreak studies of Salmonella enterica serotype Enteritidis. BMC Microbiol. doi: 10.1186/1471- 2180-8-84
37. Nelder MP, Lloyd JE et al (2008) Coxiella burnetii in wild-caught filth flies. Emerg Infect Dis 14:1002-1004
38. Nguyen SV, Hirai K (1999) Differentiation of Coxiella burnetii isolates by sequence determination and PCR-restriction fragment length polymorphism analysis of isocitrate dehydrogenase gene. FEMS Microbiol Lett 180:249-254
39. Panning M, Kilwinski J, Greiner-Fischer S, Peters M, Kramme S, Frangoulidis D, Meyer H, Henning K, Drosten C (2008) High throughput detection of Coxiella burnetii by real-time PCR with internal control system and automated DNA preparation. BMC Microbiol 19:77
40. Papp AC, Pinsonneault JK, Cooke G, Sadee W (2003) Single nucleotide polymorphism genotyping using allele-speci fic PCR and fluorescence melting curves. Biotechniques 34:1068-1072
41. Priestley RA, Hornstra HM, Pearson T, Keim P, massung RF (2009) The state of the SNP: using real-time PCR to genotype Coxiella burnetii . Abstract #34, 23rd meeting of the American Society for Rickettsiology, Hilton Head Island, SC
42. Rodolakis A, Berri M, Héchard C, Caudron C, Souriau A, Bodier CC, Blanchard B, Camuset P, Devillechaise P, Natorp JC, Vadet JP, Arricau-Bouvery N (2007) Comparison of Coxiella burnetii shedding in milk of dairy bovine, caprine, and ovine herds. J Dairy Sci 90:5352-5360
43. Samuel JE, Frazier ME, mallavia LP (1985) Correlation of plasmid type and disease caused by Coxiella burnetii . Infect Immun 49:775-779
44. Schneeberger PM, Hermans MH, van Hannen EJ, Schellekens JJ, Leenders AC, Wever PC (2009) Real-time PCR on serum samples is indispensable for early diagnosis of acute Q-fever. Clin Vaccine Immunol 17:286-290
45. Schulz J, Runge M, Schröder C, Ganter M, Hartung J (2005) Detection of Coxiella burnetii in the air of a sheep barn during shearing. Dtsch Tierarztl Wochenschr 112:470
46. Sekeyová Z, Roux V, Raoult D (1999) Intraspecies diversity of Coxiella burnetii as revealed by com1 and mucZ sequence comparison. FEMS Microbiol Lett 180:61-67
47. Seshadri R, Paulsen IT, Eisen JA, Read TD, Nelson KE, Nelson WC, Ward NL, Tettelin H, Davidsen TM, Beanan MJ, Deboy RT, Daugherty SC, Brinkac LM, madupu R, Dodson RJ, Khouri HM, Lee KH, Carty HA, Scanlan D, Heinzen RA, Thompson HA, Samuel JE, Fraser CM, Heidelberg JF (2003) Complete genome sequence of the Q-fever pathogen Coxiella burnetii . Proc Natl Acad Sci U S A 100:5455-5460
48. Stein A, Saunders NA, Taylor AG, Raoult D (1993) Phylogenic homogeneity of Coxiella burnetii strains as determinated by 16S ribosomal RNA sequencing. FEMS Microbiol Lett 113:339-344
49. Stein A, Kruszewska D, Gouvernet J, Raoult D (1997) Study of the 16S-23S ribosomal DNA internal spacer of Coxiella burnetii . Eur J Epidemiol 13:471-475
50. Svraka S, Toman R, Skultety L, Slaba K, Homan WL (2006) Establishment of a genotyping scheme for Coxiella burnetii . FEMS Microbiol Lett 254:268-274
51. Tatsumi N, Baumgartner A et al (2006) Detection of Coxiella burnetii in market chicken eggs and mayonnaise. Ann N Y Acad Sci 1078:502-505
52. Thiele D, Willems H (1994) Is plasmid based differentiation of Coxiella burnetii in 'acute' and 'chronic' isolates still valid? Eur J Epidemiol 10:427-434
53. Thiele D, Willems H, Köpf G, Krauss H (1993) Polymorphism in DNA restriction patterns of Coxiella burnetii isolates investigated by pulsed field gel electrophoresis and image analysis. Eur J Epidemiol 9:419-425
54. Thiele D, Willems H, Haas M, Krauss H (1994) Analysis of the entire nucleotide sequence of the cryptic plasmid QpH1 from Coxiella burnetii . Eur J Epidemiol 10:413-420
55. Tilburg JJ, Melchers WJ, Pettersson AM, Rossen JW, Hermans MH, van Hannen EJ, Nabuurs- Franssen MH, de Vries MC, Horrevorts AM, Klaassen CH (2010) Interlaboratory evaluation of different extraction and real-time PCR methods for the detection of Coxiella burnetii DNA in serum. J Clin Microbiol 48(11):3923-3927
56. Tissot-Dupont H, Amadei ma, Nezri M, Raoult D (2004) Wind in November, Q fever in December. Emerg Infect Dis 10:1264-1269
57. Turra M, Chang G, Whybrow D, Higgins G, Qiao M (2006) Diagnosis of acute Q fever by PCR on sera during a recent outbreak in rural south Australia. Ann N Y Acad Sci 1078:566-569
58. Valková D, Kazár J (1995) A new plasmid (QpDV) common to Coxiella burnetii isolates associated with acute and chronic Q fever. FEMS Microbiol Lett 125:275-280
59. van Woerden HC, mason BW et al (2004) Q fever outbreak in industrial setting. Emerg Infect Dis 10:1282-1289
60. Vodkin MH, Williams JC, Stephenson EH (1986) Genetic heterogeneity among isolates of Coxiella burnetii . J Gen Microbiol 132:455-463
61. Wen BH, Yu SR, Yu GQ, Li QJ, Zhang X (1991) Analysis of proteins and lipopolysaccharides from Chinese isolates of Coxiella burnetii with monoclonal antibodies. Acta Virol 35:538
62. Willems H, Ritter M, Jäger C, Thiele D (1997) Plasmid-homologous sequences in the chromosome of plasmidless Coxiella burnetii Scurry Q217. J Bacteriol 179:3293-3297
63. Xing Y, Liu J, Sakamuri RM, Wang Z, Wen Y, Vissa V, Weng X (2009) VNTR typing studies of Mycobacterium leprae in China: assessment of methods and stability of markers during treatment. Lepr Rev 80:261-271
64. Zhang GQ, To H, Yamaguchi T, Fukushi H, Hirai K (1997) Differentiation of Coxiella burnetii by sequence analysis of the gene (com1) encoding a 27-kDa outer membrane protein. Microbiol Immunol 41:871-877