Establishment of a genotyping scheme for Coxiella burnetii

FEMS Microbiology Letters

Volumn 254, Issue 2, 2006, Pages 268-274

  Svraka, Sanela ^a   Toman, Rudolf ^b   Skultety, Ludovit ^b   Slaba, Katarina ^b   Homan, Wieger L ^a  

^a NATIONAL INSTITUTE FOR PUBLIC HEALTH AND THE ENVIRONMENT   (Netherlands)

^b INSTITUTE OF VIROLOGY   (Slovakia)

Author keywords

Coxiella burnetii; Genotyping; Multiple locus variable number tandem repeats analysis (MLVA); Q fever

Indexed keywords

ANALYTIC METHOD; ARTICLE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; BACTERIUM ISOLATION; COXIELLA BURNETII; GENETIC ANALYSIS; GENETIC MARKER; GENETIC POLYMORPHISM; GENOTYPE; MULTIPLE LOCUS VARIABLE NUMBER TANDEM REPEATS ANALYSIS; NONHUMAN; PRIORITY JOURNAL; PROCESS DEVELOPMENT; VARIABLE NUMBER OF TANDEM REPEAT; ANIMAL; CLASSIFICATION; DNA SEQUENCE; EVALUATION; GENETICS; HUMAN; MICROBIOLOGY; MOLECULAR GENETICS; Q FEVER;

BACTERIA (MICROORGANISMS); COXIELLA BURNETII;

BACTERIAL DNA;

ANIMALS; BACTERIAL TYPING TECHNIQUES; COXIELLA BURNETII; DNA, BACTERIAL; GENOTYPE; HUMANS; MINISATELLITE REPEATS; MOLECULAR SEQUENCE DATA; Q FEVER; SEQUENCE ANALYSIS, DNA;

EID: 33644869503     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2005.00036.x     Document Type: Article

References (28)

1. Andoh M Nagaoka H Yamaguchi T Fukushi H Hirai K 2004 Comparison of Japanese isolates of Coxiella burnetii by PCR-RFLP and sequence analysis Microbiol Immunol 48 971 975
2. Baca OG Paretsky D 1983 Q fever and Coxiella burnetii a model for host-parasite interactions Microbiol Rev 46 127 149
3. van Belkum A Scherer S van Leeuwen W Willemse D van Alphen L Verbrugh H 1997 Variable number of tandem repeats in clinical strains of Haemophilus influenzae Infect Immun 65 5017 5027
4. Benson G 1999 Tandem repeats finder a program to analyze DNA sequences Nucleic Acids Res 27 573 580
5. Coletta-Filho HD Takita MA de Souza AA Aguilar-Vildoso CI Machado MA 2001 Differentiation of strains of Xylella fastidiosa by a variable number of tandem repeat analysis Appl Environ Microbiol 67 4091 4095
6. Farlow J Smith KL Wong J Abrams M Lytle M Keim P 2001 Francisella tularensis strain typing using multiple-locus, variable-number tandem repeat analysis J Clin Microbiol 39 3186 3192
7. Farlow J Postic D Smith KL Jay Z Baranton G Keim P 2002 Strain typing of Borrelia burgdorferi, Borrelia afzelii, and Borrelia garinii by using multiple-locus variable-number tandem repeat analysis J Clin Microbiol 40 4612 4618
8. Glazunova O Roux V Freylikman O Sekeyova Z Fournous G Tyczka J Tokarevich N Kovacova E Marrie TJ Raoult D 2005 Coxiella burnetii genotyping Emerg Infect Dis 11 1211 1217
9. Heinzen R Stieger GL Whiting LL Schmitt SA Malavia LP Frazer ME 1990 Use of pulsed field gel electrophoresis to differentiate Coxiella burnetii strains Ann N Y Acad Sci 590 504 513
10. Hendrix LR Samuel JE Mallavia LP 1991 Differentiation of Coxiella burnetii isolates by analysis of restriction-endonuclease-digested DNA separated by SDS-PAGE J Gen Microbiol 137 269 276
11. Hilbink F Penrose M Kovácová E Kazár J 1993 Q fever is absent from New Zealand Int J Epidemiol 22 945 949
12. Jager C Willems H Thiele D Baljer G 1998 Molecular characterization of Coxiella burnetii isolates Epidemiol Infect 120 157 164
13. Keim P Klevytska AM Price LB Schupp M Zinser G Smith KL Hugh-Jones ME Okinaka R Hill KK Jackson PJ 1999 Molecular diversity in Bacillus anthracis J Appl Microbiol 87 215 217
14. Klevytska AM Price LB Schupp JM Worsham PL Wong J Keim P 2001 Identification and characterization of variable-number tandem repeats in the Yersinia pestis genome J Clin Microbiol 39 3179 3185
15. Lederberg J 2000 Biological warfare and bioterrorism Principles and Practice of Infectious Diseases Mandell GL Bennet JE Dolin R eds), pp. 3235 3238 Churchill Livingstone Philadelphia, PE
16. Liu Y Lee MA Ooi EE Mavis Y Tan AL Quek HH 2003 Molecular typing of Salmonella enterica serovar typhi isolates from various countries in Asia by a multiplex PCR assay on variable-number tandem repeats J Clin Microbiol 41 4388 4394
17. Madariaga MG Rezai K Trenholme GM Weinstein RA 2003 Q fever a biological weapon in your backyard Lancet Infect Dis 3 709 721
18. Nguyen SA Hirai K 1999 Differentiation of Coxiella burnetii isolates by sequence determination and PCR-restriction fragment length polymorphism analysis of isocitrate dehydrogenase gene FEMS Microbiol Lett 180 249 254
19. Pourcel C Vidgo Y Ramisse F Vergnaud G Tram C 2003 Characterization of a tandem repeat polymorphism in Legionella pneumophila and its use for genotyping J Clin Microbiol 41 1819 1826
20. Pourcel C André-Mazeaud F Neubauer H Ramisse F Vergnaud G 2004 Tandem repeats analysis for the high resolution phylogenic analysis of Yersinia pestis BMC Microbiol 4 22
21. Sawyer LA Fishbein DB McDade JE 1987 Q fever current concepts Rev Infect Dis 9 935 946
22. Schouls LM van der Heide HG Vauterin L Vauterin P Mooi FR 2004 Multiple-locus variable-number tandem repeat analysis of Dutch Bordetella pertussis strains reveals rapid genetic changes with clonal expansion during the late 1990s J Bacteriol 186 5496 5505
23. Sekeyova Z Roux V Raoult D 1999 Intraspecies diversity of Coxiella burnetii as revealed by com1 and mucZ sequence comparison FEMS Microbiol Lett 180 61 67
24. Seshadri R Paulsen IT Eisen JA et al 2003 Complete genome sequence of the Q-fever pathogen Coxiella burnetii Proc Natl Acad Sci USA 100 5455 5460
25. Stein A Raoult D 1993 Lack of pathotype specific gene in human Coxiella burnetii isolates Microb Pathog 15 177 185
26. Stein A Raoult D 1995 Q fever endocarditis Eur Heart J 16 Suppl B 19 23
27. Top J Schouls LM Bonten MJM Willems RJL 2004 Multiple-locus, variable-number tandem repeat analysis, a novel typing scheme to study the genetic relatedness and epidemiology of Enterococcus faecium isolates J Clin Microbiol 42 4503 4511
28. Zhang GQ To H Yamaguchi T Fukushi H Hirai K 1997 Differentiation of Coxiella burnetii by sequence analysis of the gene (com1) encoding a 27-kDa outer membrane protein Microbiol Immunol 41 871 877