Determining biomembrane bending rigidities from simulations of modest size

Physical Review Letters

Volumn 109, Issue 2, 2012, Pages

  Watson, Max C ^a   Brandt, Erik G ^a   Welch, Paul M ^b   Brown, Frank L H ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b LOS ALAMOS NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BENDING RIGIDITY; BIOMEMBRANES; DIVERSE RANGE; LIPID MODEL; MOLECULAR SIMULATIONS; SHORTER WAVELENGTH; SIMULATION BOXES; THEORETICAL ARGUMENTS; THERMAL FLUCTUATIONS;

LIPID BILAYERS; RIGIDITY;

COMPUTER SIMULATION;

EID: 84863699888     PISSN: 00319007     EISSN: 10797114     Source Type: Journal    
DOI: 10.1103/PhysRevLett.109.028102     Document Type: Article

References (40)

1. W. Helfrich, Z. Naturforsch. 28C, 693 (1973). ZNFCAP 0341-0471
2. P.B. Canham, J. Theor. Biol. 26, 61 (1970). JTBIAP 0022-5193 10.1016/S0022-5193(70)80032-7
3. S.A. Safran, Statistical Thermodynamics of Surfaces, Interfaces and Membranes (Westview Press, Boulder, CO, 1994).
4. D.H. Boal, Mechanics of the Cell (Cambridge University Press, Cambridge, 2002).
5. R.D. Kamien, Rev. Mod. Phys. 74, 953 (2002). RMPHAT 0034-6861 10.1103/RevModPhys.74.953 (Pubitemid 36116694)
6. J. Liu, M. Kaksonen, D.G. Drubin, and G. Oster, Proc. Natl. Acad. Sci. U.S.A. 103, 10277 (2006). PNASA6 0027-8424 10.1073/pnas.0601045103 (Pubitemid 44051157)
7. H.T. McMahon and J.L. Gallop, Nature (London) 438, 590 (2005). NATUAS 0028-0836 10.1038/nature04396 (Pubitemid 41740562)
8. L. Chernomordik, M. Kozlov, and J. Zimmerberg, J. Membr. Biol. 146, 1 (1995), JMBBBO 0022-2631 10.1007/BF00232676
9. R. Lipowsky and E. Sackmann, Structure and Dynamics of Membranes (North Holland, Amsterdam, 1995).
10. W. Rawicz, K. Olbrich, T. McIntosh, D. Needhamand, and E. Evans, Biophys. J. 79, 328 (2000). BIOJAU 0006-3495 10.1016/S0006-3495(00)76295-3
11. Z. Yi, M. Nagao, and D. Bossev, J. Phys. Condens. Matter 21, 155104 (2009). JCOMEL 0953-8984 10.1088/0953-8984/21/15/155104
12. M.F. Brown, R.L. Thurmond, S.W. Dodd, D. Otten, and K. Beyer, J. Am. Chem. Soc. 124, 8471 (2002). JACSAT 0002-7863 10.1021/ja012660p (Pubitemid 34875407)
13. P. Méléard, C. Gerbeaud, T. Pott, L. Fernandez-Puente, I. Bivas, M. Mitov, J. Dufourcq, and P. Bothorel, Biophys. J. 72, 2616 (1997). BIOJAU 0006-3495 10.1016/S0006-3495(97)78905-7
14. E. Evans, Biophys. J. 43, 27 (1983). BIOJAU 0006-3495 10.1016/S0006-3495(83)84319-7
15. L. Bo and R.E. Waugh, Biophys. J. 55, 509 (1989). BIOJAU 0006-3495 10.1016/S0006-3495(89)82844-9
16. R. Simson, E. Wallraff, J. Faix, J. Niewöhner, G. Gerisch, and E. Sackmann, Biophys. J. 74, 514 (1998). BIOJAU 0006-3495 10.1016/S0006-3495(98) 77808-7
17. T. Baumgart, S. Das, W. Webb, and J. Jenkins, Biophys. J. 89, 1067 (2005). BIOJAU 0006-3495 10.1529/biophysj.104.049692 (Pubitemid 41098989)
18. R. Goetz, G. Gompper, and R. Lipowsky, Phys. Rev. Lett. 82, 221 (1999). PRLTAO 0031-9007 10.1103/PhysRevLett.82.221
19. S.J. Marrink and A.E. Mark, J. Phys. Chem. 105, 6122 (2001). JPCHAX 0022-3654 10.1021/jp0103474 (Pubitemid 35339078)
20. E. Lindahl and O. Edholm, Biophys. J. 79, 426 (2000). BIOJAU 0006-3495 10.1016/S0006-3495(00)76304-1
21. W.K. den Otter and W.J. Briels, J. Chem. Phys. 118, 4712 (2003). JCPSA6 0021-9606 10.1063/1.1543941
22. O. Farago and P. Pincus, J. Chem. Phys. 120, 2934 (2004). JCPSA6 0021-9606 10.1063/1.1639000
23. V.A. Harmandaris and M. Deserno, J. Chem. Phys. 125, 204905 (2006). JCPSA6 0021-9606 10.1063/1.2372761 (Pubitemid 44847708)
24. E.G. Brandt, A.R. Braun, J.N. Sachs, J.F. Nagle, and O. Edholm, Biophys. J. 100, 2104 (2011). BIOJAU 0006-3495 10.1016/j.bpj.2011.03.010
25. G. Brannigan, P.F. Phillips, and F.L.H. Brown, Phys. Rev. E 72, 011915 (2005). PLEEE8 1539-3755 10.1103/PhysRevE.72.011915 (Pubitemid 41521069)
26. M.C. Watson, E.S. Penev, P.M. Welch, and F.L.H. Brown, J. Chem. Phys. 135, 244701 (2011). JCPSA6 0021-9606 10.1063/1.3660673
27. S.J. Marrink, A.H. de Vries, and A.E. Mark, J. Phys. Chem. B 108, 750 (2004). JPCBFK 1520-6106 10.1021/jp036508g
28. S. Shkulipa, Ph.D. thesis, University of Twente, 2006.
29. E.R. May, A. Narang, and D.I. Kopelevich, Phys. Rev. E 76, 021913 (2007). PLEEE8 1539-3755 10.1103/PhysRevE.76.021913 (Pubitemid 47258006)
30. E.R. May, A. Narang, and D.I. Kopelevich, Mol. Simul. 33, 787 (2007). MOSIEA 0892-7022 10.1080/08927020701308323 (Pubitemid 47347011)
31. M. Hamm and M.M. Kozlov, Eur. Phys. J. E EPJSFH 1292-8941 6, 519 (1998). 10.1007/s100510050579
32. M. Hamm and M.M. Kozlov, Eur. Phys. J. E 3, 323 (2000). EPJSFH 1292-8941 10.1007/s101890070003
33. N.H. Phuong, G. Germano, and F. Schmid, J. Chem. Phys. 115, 7227 (2001). JCPSA6 0021-9606 10.1063/1.1404388 (Pubitemid 33028853)
34. F.C. Frank, Discuss. Faraday Soc. DFSOAW 0014-7664 25, 19 (1958). 10.1039/df9582500019
35. S.J. Marrink, J.H. Risselada, S. Yefimov, P.D. Tieleman, and A.H. de Vries, J. Phys. Chem. B 111, 7812 (2007). JPCBFK 1520-6106 10.1021/jp071097f (Pubitemid 47169693)
36. O. Berger, O. Edholm, and F. Jähnig, Biophys. J. 72, 2002 (1997). BIOJAU 0006-3495 10.1016/S0006-3495(97)78845-3
37. E.G. Brandt, M.C. Watson, P.J. Atzberger, and F.L.H. Brown (to be published).
38. C.-H. Lee, W.C. Lin, and J. Wang, Phys. Rev. E 64, 020901 (2001). PLEEE8 1063-651X 10.1103/PhysRevE.64.020901
39. H. Duwe and E. Sackmann, Physica (Amsterdam) 163A, 410 (1990). PHYADX 0378-4371 10.1016/0378-4371(90)90349-W
40. N. Kučerka, Y. Liu, N. Chu, H.I. Petrache, S. Tristram-Nagle, and J.F. Nagle, Biophys. J. 88, 2626 (2005). BIOJAU 0006-3495 10.1529/biophysj.104. 056606 (Pubitemid 40976131)