Georgenia daeguensis sp. nov., isolated from 4-chlorophenol enrichment culture

International Journal of Systematic and Evolutionary Microbiology

Volumn 62, Issue 7, 2012, Pages 1703-1709

  Woo, Sung Geun ^a,b   Cui, Yingshun ^c   Kang, Myung Suk ^d   Jin, Long ^e   Kim, Kwang Kyu ^e   Lee, Sung Taik ^c   Lee, Myungjin ^b   Park, Joonhong ^a  

^a Yonsei University   (South Korea)

^b H Plus Eco Ltd   (South Korea)

^c Korea Advanced Institute of Science and Technology (KAIST)   (South Korea)

^d National Institute of Biological Resources   (South Korea)

^e Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

4 CHLOROPHENOL; BACTERIAL RNA; CARDIOLIPIN; CATECHOL 1,2 DIOXYGENASE; CATECHOL 2,3 DIOXYGENASE; FATTY ACID; PHOSPHATIDYLGLYCEROL; PHOSPHATIDYLINOSITOL; RNA 16S;

ARTICLE; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CELL LYSATE; GEORGENIA DAEGUENSIS; GEORGENIA HALOPHILA; GEORGENIA MURALIS; GEORGENIA RUANII; GEORGENIA THERMOTOLERANS; GRAM POSITIVE BACTERIUM; NONHUMAN; PRIORITY JOURNAL; PROTEIN CLEAVAGE; RNA SEQUENCE;

ACTINOMYCETALES; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CARBOHYDRATES; CHLOROPHENOLS; CLUSTER ANALYSIS; CULTURE MEDIA; CYTOSOL; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHOSPHOLIPIDS; PHYLOGENY; QUINONES; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEWAGE;

ACTINOBACTERIA; BACTERIA (MICROORGANISMS); BOGORIELLACEAE; GEORGENIA; GEORGENIA MURALIS; HALOPHILA; POSIBACTERIA;

EID: 84863680012     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.033217-0     Document Type: Article

References (34)

1. Altenburger, P., Kämpfer, P., Schumann, P., Vybiral, D., Lubitz, W. & Busse, H.-J. (2002). Georgenia muralis gen. nov., sp. nov., a novel actinobacterium isolated from a medieval wall painting. Int J Syst Evol Microbiol 52, 875-881.
2. Assih, E. A., Ouattara, A. S., Thierry, S., Cayol, J.-L., Labat, M. & Macarie, H. (2002). Stenotrophomonas acidaminiphila sp. nov., a strictly aerobic bacterium isolated from an upflow anaerobic sludge blanket (UASB) reactor. Int J Syst Evol Microbiol 52, 559-568.
3. Bae, H. S., Lee, J. M., Kim, Y. B. & Lee, S.-T. (1996). Biodegradation of the mixtures of 4-chlorophenol and phenol by Comamonas testosteroni CPW301. Biodegradation 7, 463-469.
4. Cappuccino, J. G. & Sherman, N. (2002). Microbiology: a Laboratory Manual, 6th edn. Menlo Park, CA: Benjamin/Cummings.
5. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
6. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
7. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
8. Felsenstein, J. (2009). PHYLIP (phylogeny inference package), version 3.69. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
9. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
10. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
11. Hamada, M., Tamura, T., Ishida, Y. & Suzuki, K. (2009). Georgenia thermotolerans sp. nov., an actinobacterium isolated from forest soil. Int J Syst Evol Microbiol 59, 1875-1879.
12. Hiraishi, A., Ueda, Y., Ishihara, J. & Mori, T. (1996). Comparative lipoquinone analysis of influent sewage and activated sludge by highperformance liquid chromatography and photodiode array detection. J Gen Appl Microbiol 42, 457-469.
13. Kämpfer, P., Arun, A. B., Busse, H.-J., Langer, S., Young, C.-C., Chen, W.-M., Schumann, P., Syed, A. A. & Rekha, P. D. (2010). Georgenia soli sp. nov., isolated from iron-ore-contaminated soil in India. Int J Syst Evol Microbiol 60, 1027-1030.
14. Kim, M. K., Im, W.-T., Ohta, H., Lee, M. & Lee, S.-T. (2005). Sphingopyxis granuli sp. nov., a b-glucosidase-producing bacterium in the family Sphingomonadaceae in a-4 subclass of the Proteobacteria. J Microbiol 43, 152-157.
15. Kimura, M. (1983). The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press.
16. Lee, M., Ten, L. N., Lee, H. W., Oh, H. W., Im, W. T. & Lee, S.-T. (2008). Sphingopyxis ginsengisoli sp. nov., isolated from soil of a ginseng field in South Korea. Int J Syst Evol Microbiol 58, 2342-2347.
17. Li, W.-J., Xu, P., Schumann, P., Zhang, Y.-Q., Pukall, R., Xu, L.-H., Stackebrandt, E. & Jiang, C.-L. (2007). Georgenia ruanii sp. nov., a novel actinobacterium isolated from forest soil in Yunnan (China), and emended description of the genus Georgenia. Int J Syst Evol Microbiol 57, 1424-1428.
18. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
19. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
20. Moore, D. D. & Dowhan, D. (1995). Preparation and analysis of DNA. In Current Protocols in Molecular Biology, pp. 2-11. Edited by F. W. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith & K. Struhl. New York: Wiley.
21. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
22. Sasser, M. (1990). Identification of bacteria through fatty acid analysis. In Methods in Phytobacteriology, pp. 199-204. Edited by Z. Klement, K. Rudolph & D. C. Sands. Budapest: Akademiai Kaido.
23. Schleifer, K. H. (1985). Analysis of the chemical composition and primary structure of murein. Methods Microbiol 18, 123-156.
24. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
25. Sei, K., Asano, K.-I., Tateishi, N., Mori, K., Ike, M. & Fujita, M. (1999). Design of PCR primers and gene probes for the general detection of bacterial populations capable of degrading aromatic compounds via catechol cleavage pathways. J Biosci Bioeng 88, 542-550.
26. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
27. Stackebrandt, E., Frederiksen, W., Garrity, G. M., Grimont, P. A. D., Kämpfer, P., Maiden, M. C., Nesme, X., Rosselló-Móra, R., Swings, J. & other authors (2002). Report of the ad hoc committee for the reevaluation of the species definition in bacteriology. Int J Syst Evol Microbiol 52, 1043-1047.
28. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226-231.
29. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetic analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
30. Tang, S.-K., Wang, Y., Chen, Y., Lou, K., Cao, L.-L., Xu, L.-H. & Li, W.-J. (2009). Zhihengliuella alba sp. nov., and emended description of the genus Zhihengliuella. Int J Syst Evol Microbiol 59, 2025-2032.
31. Tang, S.-K., Wang, Y., Lee, J.-C., Lou, K., Park, D.-J., Kim, C.-J. & Li, W.-J. (2010). Georgenia halophila sp. nov., a halophilic actinobacterium isolated from a salt lake. Int J Syst Evol Microbiol 60, 1317-1421.
32. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
33. Tindall, B. J., Rosselló-Móra, R., Busse, H.-J., Ludwig, W. & Kämpfer, P. (2010). Notes on the characterization of prokaryote strains for taxonomic purposes. Int J Syst Evol Microbiol 60, 249-266.
34. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.