Different genes interact with particulate matter and tobacco smoke exposure in affecting lung function decline in the general population

PLoS ONE

Volumn 7, Issue 7, 2012, Pages

  Curjuric, Ivan ^a,b   Imboden, Medea ^a,b   Nadif, Rachel ^c   Kumar, Ashish ^a,b,d   Schindler, Christian ^a,b   Haun, Margot ^e   Kronenberg, Florian ^e   Künzli, Nino ^a,b   Phuleria, Harish ^a,b   Postma, Dirkje S ^f   Russi, Erich W ^g   Rochat, Thierry ^h   Demenais, Florence ^i,j,k   Probst Hensch, Nicole M ^a,b  

^a SWISS TROPICAL AND PUBLIC HEALTH INSTITUTE   (Switzerland)

^b UNIVERSITY OF BASEL   (Switzerland)

^c CENTRE FOR RESEARCH IN EPIDEMIOLOGY AND POPULATION HEALTH   (France)

^d UNIVERSITY OF OXFORD   (United Kingdom)

^e INNSBRUCK MEDICAL UNIVERSITY   (Austria)

^f UNIVERSITY MEDICAL CENTER GRONINGEN   (Netherlands)

^g UNIVERSITY HOSPITAL ZURICH   (Switzerland)

^h GENEVA UNIVERSITY HOSPITALS   (Switzerland)

ⁱ INSERM   (France)

^j FONDATION JEAN DAUSSET CEPH   (France)

^k UNIVERSITÉ PARIS DIDEROT   (France)

more..

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; AGED; ARTICLE; CYSTEINE RICH SECRETORY PROTEIN 2 GENE; DNA SEQUENCE; ENVIRONMENTAL EXPOSURE; FORCED EXPIRATORY FLOW; FORCED EXPIRATORY VOLUME; FORCED VITAL CAPACITY; GENE; GENE INTERACTION; GENETIC ASSOCIATION; GENETIC VARIABILITY; GENOTYPE ENVIRONMENT INTERACTION; HUMAN; LUNG FUNCTION; OXIDATIVE STRESS; PARKINSON DISEASE PROTEIN 2 GENE; PARTICULATE MATTER; SINGLE NUCLEOTIDE POLYMORPHISM; SMOKING;

ADULT; AGED; AIR POLLUTION; COHORT STUDIES; FEMALE; GENE-ENVIRONMENT INTERACTION; GENOME-WIDE ASSOCIATION STUDY; HUMANS; LUNG; MALE; MIDDLE AGED; OXIDATIVE STRESS; PARTICULATE MATTER; POLYMORPHISM, SINGLE NUCLEOTIDE; QUESTIONNAIRES; RESPIRATORY FUNCTION TESTS; SIGNAL TRANSDUCTION; SMOKING;

NICOTIANA TABACUM;

EID: 84863676522     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0040175     Document Type: Article

References (64)

1. Burney PG, Hooper R, (2011) Forced vital capacity, airway obstruction and survival in a general population sample from the USA. Thorax 66: 49-54.
2. Stavem K, Aaser E, Sandvik L, Bjørnholt JV, Erikssen G, et al. (2005) Lung function, smoking and mortality in a 26-year follow-up of healthy middle-aged males. European Respiratory Journal 25: 618-625.
3. Schünemann HJ, Dorn J, Grant BJB, Winkelstein W, Trevisan M, (2000) Pulmonary Function Is a Long-term Predictor of Mortality in the General Population. Chest 118: 656-664.
4. Lange P, Nyboe J, Appleyard M, Jensen G, Schnohr P, (1990) Spirometric findings and mortality in never-smokers. Journal of Clinical Epidemiology 43: 867-873.
5. Eisner MD, Wang Y, Haight TJ, Balmes J, Hammond SK, et al. (2007) Secondhand Smoke Exposure, Pulmonary Function, and Cardiovascular Mortality. Annals of Epidemiology 17: 364-373.
6. Carta P, Aru G, Barbieri MT, Avataneo G, Casula D, (1996) Dust exposure, respiratory symptoms, and longitudinal decline of lung function in young coal miners. Occupational and Environmental Medicine 53: 312-319.
7. Kauffmann F, Drouet D, Lellouch J, Brille D, (1982) Occupational exposure and 12-year spirometric changes among Paris area workers. British Journal of Industrial Medicine 39: 221-232.
8. Johnsen HL, Hetland SM, Benth JS, Kongerud J, Soyseth V, (2010) Dust Exposure Assessed by a Job Exposure Matrix Is Associated with Increased Annual Decline in FEV1: A 5-year Prospective Study of Employees in Norwegian Smelters. American Journal of Respiratory and Critical Care Medicine 181: 1234-1240.
9. Sunyer J, Zock JP, Kromhout H, Garcia-Esteban R, Radon K, et al. (2005) Lung function decline, chronic bronchitis, and occupational exposures in young adults. American Journal of Respiratory and Critical Care Medicine 172: 1139-1145.
10. Downs SH, Schindler C, Liu LJ, Keidel D, Bayer-Oglesby L, et al. (2007) Reduced exposure to PM10 and attenuated age-related decline in lung function. New England Journal Medicine 357: 2338-2347.
11. Rahman I, Adcock IM, (2006) Oxidative stress and redox regulation of lung inflammation in COPD. European Respiratory Journal 28: 219-242.
12. MacNee W, (2005) Pulmonary and Systemic Oxidant/Antioxidant Imbalance in Chronic Obstructive Pulmonary Disease. Proceedings of the American Thoracic Society 2: 50-60.
13. Hall IP, Lomas DA, (2010) The genetics of obstructive lung disease: big is beautiful. Thorax 65: 760-761.
14. Silverman EK, Spira A, Pare PD, (2009) Genetics and Genomics of Chronic Obstructive Pulmonary Disease. Proceedings of the American Thoracic Society 6: 539-542.
15. Smolonska J, Wijmenga C, Postma DS, Boezen HM, (2009) Meta-analyses on suspected chronic obstructive pulmonary disease genes: a summary of 20 years' research. American Journal of Respiratory and Critical Care Medicine 180: 618-631.
16. He JQ, Connett JE, Anthonisen NR, Pare PD, Sandford AJ, (2004) Glutathione S-transferase variants and their interaction with smoking on lung function. American Journal of Respiratory and Critical Care Medicine 170: 388-394.
17. Hancock DB, Eijgelsheim M, Wilk JB, Gharib SA, Loehr LR, et al. (2010) Meta-analyses of genome-wide association studies identify multiple loci associated with pulmonary function. Nature Genetics 42: 45-52.
18. Repapi E, Sayers I, Wain LV, Burton PR, Johnson T, et al. (2010) Genome-wide association study identifies five loci associated with lung function. Nature Genetics 42: 36-44.
19. Pillai SG, Ge D, Zhu G, Kong X, Shianna KV, et al. (2009) A genome-wide association study in chronic obstructive pulmonary disease (COPD): identification of two major susceptibility loci. PLoS Genetics 5: e1000421.
20. Cho MH, Boutaoui N, Klanderman BJ, Sylvia JS, Ziniti JP, et al. (2010) Variants in FAM13A are associated with chronic obstructive pulmonary disease. Nature Genetics 42: 200-202.
21. Wilk JB, Chen TH, Gottlieb DJ, Walter RE, Nagle MW, et al. (2009) A genome-wide association study of pulmonary function measures in the Framingham Heart Study. PLoS Genetics 5: e1000429.
22. Artigas MS, Loth DW, Wain LV, Gharib SA, Obeidat M, et al. (2011) Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function. Nature Genetics doi:10.1038/ng.941.
23. Obeidat Me, Wain LV, Shrine N, Kalsheker N, Artigas MS, et al. (2011) A Comprehensive Evaluation of Potential Lung Function Associated Genes in the SpiroMeta General Population Sample. PLoS One 6: e19382.
24. Pillai SG, Kong X, Edwards LD, Cho MH, Anderson WH, et al. (2010) Loci identified by genome-wide association studies influence different disease-related phenotypes in chronic obstructive pulmonary disease. American Journal of Respiratory and Critical Care Medicine 182: 1498-1505.
25. Ege MJ, Strachan DP, Cookson WO, Moffatt MF, Gut I, et al. (2011) Gene-environment interaction for childhood asthma and exposure to farming in Central Europe. The Journal of allergy and clinical immunology 127: 138-144, 144 e131-134.
26. Thomas D, (2010) Methods for Investigating Gene-Environment Interactions in Candidate Pathway and Genome-Wide Association Studies. Annual Review of Public Health 31: 21-36.
27. Le Marchand L, Wilkens LR, (2008) Design Considerations for Genomic Association Studies: Importance of Gene-Environment Interactions. Cancer Epidemiology Biomarkers & Prevention 17: 263-267.
28. Yang IA, Fong KM, Zimmerman PV, Holgate ST, Holloway JW, (2008) Genetic susceptibility to the respiratory effects of air pollution. Thorax 63: 555-563.
29. Curjuric I, Imboden M, Schindler C, Downs SH, Hersberger M, et al. (2010) HMOX1 and GST variants modify attenuation of FEF25-75% decline due to PM10 reduction. European Respiratory Journal 35: 505-514.
30. Siedlinski M, Postma DS, van Diemen CC, Blokstra A, Smit HA, et al. (2008) Lung function loss, smoking, vitamin C intake, and polymorphisms of the glutamate-cysteine ligase genes. American Journal of Respiratory and Critical Care Medicine 178: 13-19.
31. Bouzigon E, Corda E, Aschard H, Dizier MH, Boland A, et al. (2008) Effect of 17q21 variants and smoking exposure in early-onset asthma. The New England Journal of Medicine 359: 1985-1994.
32. Van Durme YM, Eijgelsheim M, Joos GF, Hofman A, Uitterlinden AG, et al. (2010) Hedgehog-interacting protein is a COPD susceptibility gene: the Rotterdam Study. The European Respiratory Journal 36: 89-95.
33. Fridley BL, Biernacka JM, (2011) Gene set analysis of SNP data: benefits, challenges, and future directions. European Journal of Human Genetics 19: 837-843.
34. Ackermann-Liebrich U, Kuna-Dibbert B, Probst-Hensch NM, Schindler C, Felber Dietrich D, et al. (2005) Follow-up of the Swiss Cohort Study on Air Pollution and Lung Diseases in Adults (SAPALDIA 2) 1991-2003: methods and characterization of participants. Sozial- und Präventivmedizin 50: 245-263.
35. Martin BW, Ackermann-Liebrich U, Leuenberger P, Kunzli N, Stutz EZ, et al. (1997) SAPALDIA: methods and participation in the cross-sectional part of the Swiss Study on Air Pollution and Lung Diseases in Adults. Sozial- und Präventivmedizin 42: 67-84.
36. Kunzli N, Ackermann-Liebrich U, Keller R, Perruchoud AP, Schindler C, (1995) Variability of FVC and FEV1 due to technician, team, device and subject in an eight centre study: three quality control studies in SAPALDIA. Swiss Study on Air Pollution and Lung Disease in Adults. European Respiratory Journal 8: 371-376.
37. Kunzli N, Kuna-Dibbert B, Keidel D, Keller R, Brandli O, et al. (2005) Longitudinal validity of spirometers-a challenge in longitudinal studies. Swiss Medical Weekly 135: 503-508.
38. American Thoracic Society (1995) Standardization of Spirometry, 1994 Update. American Thoracic Society. American Journal of Respiratory and Critical Care Medicine 152: 1107-1136.
39. American Thoracic Society (1978) Epidemiology Standardization Project. e.c. American Thoracic Society. Recommended respiratory disease questionnaires for use with adults and children in epidemiological research. The American Review of Respiratory Disease 118: 7-52.
40. Liu LJ, Curjuric I, Keidel D, Heldstab J, Kunzli N, et al. (2007) Characterization of source-specific air pollution exposure for a large population-based Swiss cohort (SAPALDIA). Environmental Health Perspectives 115: 1638-1645.
41. Moffatt MF, Gut IG, Demenais F, Strachan DP, Bouzigon E, et al. (2010) A large-scale, consortium-based genomewide association study of asthma. The New England Journal of Medicine 363: 1211-1221.
42. Li Y, Willer CJ, Ding J, Scheet P, Abecasis GR, (2010) MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes. Genetic Epidemiology 34: 816-834.
43. International HapMap Consortium, (2005) A haplotype map of the human genome. Nature 437: 1299-1320.
44. Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nature Genetics 25: 25-29.
45. Elliott NA, Volkert MR, (2004) Stress induction and mitochondrial localization of Oxr1 proteins in yeast and humans. Molecular and Cellular Biology 24: 3180-3187.
46. Kaimul Ahsan M, Nakamura H, Tanito M, Yamada K, Utsumi H, et al. (2005) Thioredoxin-1 suppresses lung injury and apoptosis induced by diesel exhaust particles (DEP) by scavenging reactive oxygen species and by inhibiting DEP-induced downregulation of Akt. Free Radical Biology & Medicine 39: 1549-1559.
47. Nickel C, Trujillo M, Rahlfs S, Deponte M, Radi R, et al. (2005) Plasmodium falciparum 2-Cys peroxiredoxin reacts with plasmoredoxin and peroxynitrite. Biological Chemistry 386: 1129-1136.
48. Tomita M, Okuyama T, Katsuyama H, Hidaka K, Otsuki T, et al. (2006) Gene expression in rat lungs during early response to paraquat-induced oxidative stress. International Journal of Molecular Medicine 17: 37-44.
49. Tseng CF, Huang HY, Yang YT, Mao SJ, (2004) Purification of human haptoglobin 1-1, 2-1, and 2-2 using monoclonal antibody affinity chromatography. Protein expression and Purification 33: 265-273.
50. Karolchik D, Hinrichs AS, Furey TS, Roskin KM, Sugnet CW, et al. (2004) The UCSC Table Browser data retrieval tool. Nucleic Acids Research 32: D493-496.
51. Aulchenko Y, Struchalin M, van Duijn C, (2010) ProbABEL package for genome-wide association analysis of imputed data. BMC Bioinformatics 11: 134-134.
52. Yu K, Li Q, Bergen AW, Pfeiffer RM, Rosenberg PS, et al. (2009) Pathway analysis by adaptive combination of P-values. Genetic Epidemiology 33: 700-709.
53. Gauderman W, Morrison J, (2006) QUANTO 1.1: A computer program for power and sample size calculations for genetic-epidemiology studies. Available:http://hydra.usc.edu/gxe. Accessed 2012 Jun 15.
54. Araujo JA, Nel AE, (2009) Particulate matter and atherosclerosis: role of particle size, composition and oxidative stress. Particle and Fibre Toxicology 6: 24.
55. Li N, Hao M, Phalen RF, Hinds WC, Nel AE, (2003) Particulate air pollutants and asthma. A paradigm for the role of oxidative stress in PM-induced adverse health effects. Clinical Immunology 109: 250-265.
56. Li N, Kim S, Wang M, Froines J, Sioutas C, et al. (2002) Use of a stratified oxidative stress model to study the biological effects of ambient concentrated and diesel exhaust particulate matter. Inhalation Toxicology 14: 459-486.
57. Comandini A, Marzano V, Curradi G, Federici G, Urbani A, et al. (2010) Markers of anti-oxidant response in tobacco smoke exposed subjects: a data-mining review. Pulmonary Pharmacology & Therapeutics 23(6): 482-92.
58. Faux SP, Tai T, Thorne D, Xu Y, Breheny D, et al. (2009) The role of oxidative stress in the biological responses of lung epithelial cells to cigarette smoke. Biomarkers: Biochemical Indicators of Exposure, Response, and Susceptibility to Chemicals 14: 90-96.
59. Aoshiba K, Tamaoki J, Nagai A, (2001) Acute cigarette smoke exposure induces apoptosis of alveolar macrophages. American Journal of Physiology- Lung Cellular and Molecular Physiology 281: L1392-1401.
60. Kim HP, Wang X, Chen ZH, Lee SJ, Huang MH, et al. (2008) Autophagic proteins regulate cigarette smoke-induced apoptosis: protective role of heme oxygenase-1. Autophagy 4: 887-895.
61. Slebos DJ, Ryter SW, van der Toorn M, Liu F, Guo F, et al. (2007) Mitochondrial localization and function of heme oxygenase-1 in cigarette smoke-induced cell death. American Journal of Respiratory Cell and Molecular Biology 36: 409-417.
62. van der Vaart H, Postma DS, Timens W, ten Hacken NH, (2004) Acute effects of cigarette smoke on inflammation and oxidative stress: a review. Thorax 59: 713-721.
63. Kraft P, (2008) Curses-winner's and otherwise-in genetic epidemiology. Epidemiology 19: 649-651; discussion 657-648.
64. Sacks JD, Stanek LW, Luben TJ, Johns DO, Buckley BJ, et al. (2011) Particulate matter-induced health effects: who is susceptible? Environmental Health Perspectives 119: 446-454.