Ecdysone induced gene expression is associated with acetylation of histone H3 lysine 23 in drosophila melanogaster

PLoS ONE

Volumn 7, Issue 7, 2012, Pages

  Bodai, László ^a,d   Zsindely, Nóra ^a   Gáspár, Renáta ^a   Kristó, Ildikó ^a,e   Komonyi, Orbán ^a,b   Boros, Imre Miklós ^a,c  

^a UNIVERSITY OF SZEGED   (Hungary)

^b INSTITUT DE GÉNÉTIQUE ET DE BIOLOGIE MOLÉCULAIRE ET CELLULAIRE   (France)

^c INSTITUTE OF EXPERIMENTAL MEDICINE   (Hungary)

^d UNIVERSITY OF CALIFORNIA   (United States)

^e INSTITUTE OF BIOCHEMISTRY   (Hungary)

Author keywords

[No Author keywords available]

Indexed keywords

ECDYSONE; HISTONE H3; HISTONE H3 LYSINE 23; HISTONE H3 LYSINE 9; HISTONE H4; HISTONE H4 LYSINE 12; HISTONE H4 LYSINE 16; HISTONE H4 LYSINE 8; UNCLASSIFIED DRUG;

ANIMAL CELL; ANIMAL TISSUE; ARTHROPOD LARVA; ARTICLE; CHROMATIN IMMUNOPRECIPITATION; CONTROLLED STUDY; DROSOPHILA MELANOGASTER; EIP74EF GENE; EIP75B GENE; EMBRYO; GENE; GENE ACTIVATION; GENE EXPRESSION REGULATION; GENE SILENCING; GENETIC CODE; GENETIC CONSERVATION; GENETIC CORRELATION; HISTONE ACETYLATION; IN VIVO STUDY; NEJIRE GENE; NONHUMAN; PROMOTER REGION; PROTEIN LOCALIZATION; TRANSCRIPTION INITIATION; TRANSCRIPTION REGULATION;

ACETYLATION; ACETYLTRANSFERASES; ANIMALS; DNA-BINDING PROTEINS; DROSOPHILA MELANOGASTER; DROSOPHILA PROTEINS; ECDYSONE; GENE EXPRESSION REGULATION; GENES, INSECT; HISTONES; LARVA; LYSINE; MODELS, GENETIC; P300-CBP TRANSCRIPTION FACTORS; PROMOTER REGIONS, GENETIC; PROTEIN PROCESSING, POST-TRANSLATIONAL; TIME FACTORS; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

DROSOPHILA MELANOGASTER;

EID: 84863662840     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0040565     Document Type: Article

References (51)

1. Luger K, Mader AW, Richmond RK, Sargent DF, Richmond TJ, (1997) Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature 389: 251-260.
2. Campos EI, Reinberg D, (2009) Histones: annotating chromatin. Annu Rev Genet 43: 559-599.
3. Munshi A, Shafi G, Aliya N, Jyothy A, (2009) Histone modifications dictate specific biological readouts. J Genet Genomics 36: 75-88.
4. Peterson CL, Laniel MA, (2004) Histones and histone modifications. Curr Biol 14: R546-551.
5. Jenuwein T, Allis CD, (2001) Translating the histone code. Science 293: 1074-1080.
6. Allfrey VG, Faulkner R, Mirsky AE, (1964) Acetylation and Methylation of Histones and Their Possible Role in the Regulation of Rna Synthesis. Proc Natl Acad Sci U S A 51: 786-794.
7. Dhalluin C, Carlson JE, Zeng L, He C, Aggarwal AK, et al. (1999) Structure and ligand of a histone acetyltransferase bromodomain. Nature 399: 491-496.
8. Marmorstein R, (2001) Structure of histone deacetylases: insights into substrate recognition and catalysis. Structure 9: 1127-1133.
9. Sterner DE, Berger SL, (2000) Acetylation of histones and transcription-related factors. Microbiol Mol Biol Rev 64: 435-459.
10. Barth TK, Imhof A, (2010) Fast signals and slow marks: the dynamics of histone modifications. Trends Biochem Sci 35: 618-626.
11. Carre C, Szymczak D, Pidoux J, Antoniewski C, (2005) The histone H3 acetylase dGcn5 is a key player in Drosophila melanogaster metamorphosis. Mol Cell Biol 25: 8228-8238.
12. Scott EK, Lee T, Luo L, (2001) enok encodes a Drosophila putative histone acetyltransferase required for mushroom body neuroblast proliferation. Curr Biol 11: 99-104.
13. Grienenberger A, Miotto B, Sagnier T, Cavalli G, Schramke V, et al. (2002) The MYST domain acetyltransferase Chameau functions in epigenetic mechanisms of transcriptional repression. Curr Biol 12: 762-766.
14. Buszczak M, Segraves WA, (2000) Insect metamorphosis: out with the old, in with the new. Curr Biol 10: R830-833.
15. Thomas HE, Stunnenberg HG, Stewart AF, (1993) Heterodimerization of the Drosophila ecdysone receptor with retinoid X receptor and ultraspiracle. Nature 362: 471-475.
16. Yao TP, Forman BM, Jiang Z, Cherbas L, Chen JD, et al. (1993) Functional ecdysone receptor is the product of EcR and Ultraspiracle genes. Nature 366: 476-479.
17. Thummel CS, (1996) Flies on steroids-Drosophila metamorphosis and the mechanisms of steroid hormone action. Trends Genet 12: 306-310.
18. Burtis KC, Thummel CS, Jones CW, Karim FD, Hogness DS, (1990) The Drosophila 74EF early puff contains E74, a complex ecdysone-inducible gene that encodes two ets-related proteins. Cell 61: 85-99.
19. Segraves WA, Hogness DS, (1990) The E75 ecdysone-inducible gene responsible for the 75B early puff in Drosophila encodes two new members of the steroid receptor superfamily. Genes Dev 4: 204-219.
20. Grant PA, Eberharter A, John S, Cook RG, Turner BM, et al. (1999) Expanded lysine acetylation specificity of Gcn5 in native complexes. J Biol Chem 274: 5895-5900.
21. Suka N, Suka Y, Carmen AA, Wu J, Grunstein M, (2001) Highly specific antibodies determine histone acetylation site usage in yeast heterochromatin and euchromatin. Mol Cell 8: 473-479.
22. Daujat S, Bauer UM, Shah V, Turner B, Berger S, et al. (2002) Crosstalk between CARM1 methylation and CBP acetylation on histone H3. Curr Biol 12: 2090-2097.
23. Xue K, Song J, Wei H, Chen L, Ma Y, et al. (2010) Synchronous behaviors of CBP and acetylations of lysine 18 and lysine 23 on histone H3 during porcine oocyte first meiotic division. Mol Reprod Dev 77: 605-614.
24. Pankotai T, Komonyi O, Bodai L, Ujfaludi Z, Muratoglu S, et al. (2005) The homologous Drosophila transcriptional adaptors ADA2a and ADA2b are both required for normal development but have different functions. Mol Cell Biol 25: 8215-8227.
25. Hilfiker A, Hilfiker-Kleiner D, Pannuti A, Lucchesi JC, (1997) mof, a putative acetyl transferase gene related to the Tip60 and MOZ human genes and to the SAS genes of yeast, is required for dosage compensation in Drosophila. EMBO J 16: 2054-2060.
26. Miotto B, Sagnier T, Berenger H, Bohmann D, Pradel J, et al. (2006) Chameau HAT and DRpd3 HDAC function as antagonistic cofactors of JNK/AP-1-dependent transcription during Drosophila metamorphosis. Genes Dev 20: 101-112.
27. Bodai L, Pallos J, Thompson LM, Marsh JL, (2012) Pcaf modulates polyglutamine pathology in a Drosophila model of Huntington's disease. Neuro-degenerative diseases 9: 104-106.
28. Ciurciu A, Komonyi O, Pankotai T, Boros IM, (2006) The Drosophila histone acetyltransferase Gcn5 and transcriptional adaptor Ada2a are involved in nucleosomal histone H4 acetylation. Molecular and Cellular Biology 26: 9413-9423.
29. Akimaru H, Chen Y, Dai P, Hou DX, Nonaka M, et al. (1997) Drosophila CBP is a co-activator of cubitus interruptus in hedgehog signalling. Nature 386: 735-738.
30. Lilja T, Qi D, Stabell M, Mannervik M, (2003) The CBP coactivator functions both upstream and downstream of Dpp/Screw signaling in the early Drosophila embryo. Dev Biol 262: 294-302.
31. Kumar JP, Jamal T, Doetsch A, Turner FR, Duffy JB, (2004) CREB binding protein functions during successive stages of eye development in Drosophila. Genetics 168: 877-893.
32. Tie F, Banerjee R, Stratton CA, Prasad-Sinha J, Stepanik V, et al. (2009) CBP-mediated acetylation of histone H3 lysine 27 antagonizes Drosophila Polycomb silencing. Development 136: 3131-3141.
33. Anamika K, Krebs AR, Thompson J, Poch O, Devys D, et al. (2010) Lessons from genome-wide studies: an integrated definition of the coactivator function of histone acetyl transferases. Epigenetics Chromatin 3: 18.
34. Huet F, Ruiz C, Richards G, (1993) Puffs and PCR: the in vivo dynamics of early gene expression during ecdysone responses in Drosophila. Development 118: 613-627.
35. Thummel CS, Burtis KC, Hogness DS, (1990) Spatial and temporal patterns of E74 transcription during Drosophila development. Cell 61: 101-111.
36. Karim FD, Thummel CS, (1991) Ecdysone coordinates the timing and amounts of E74A and E74B transcription in Drosophila. Genes & Development 5: 1067-1079.
37. Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, et al. (2011) Comprehensive analysis of the chromatin landscape in Drosophila melanogaster. Nature 471: 480-485.
38. Fu M, Wang C, Reutens AT, Wang J, Angeletti RH, et al. (2000) p300 and p300/cAMP-response element-binding protein-associated factor acetylate the androgen receptor at sites governing hormone-dependent transactivation. J Biol Chem 275: 20853-20860.
39. Kim MY, Woo EM, Chong YT, Homenko DR, Kraus WL, (2006) Acetylation of estrogen receptor alpha by p300 at lysines 266 and 268 enhances the deoxyribonucleic acid binding and transactivation activities of the receptor. Mol Endocrinol 20: 1479-1493.
40. Sanchez-Pacheco A, Martinez-Iglesias O, Mendez-Pertuz M, Aranda A, (2009) Residues K128, 132, and 134 in the thyroid hormone receptor-alpha are essential for receptor acetylation and activity. Endocrinology 150: 5143-5152.
41. Paul BD, Buchholz DR, Fu L, Shi YB, (2007) SRC-p300 coactivator complex is required for thyroid hormone-induced amphibian metamorphosis. J Biol Chem 282: 7472-7481.
42. Shang Y, Myers M, Brown M, (2002) Formation of the androgen receptor transcription complex. Mol Cell 9: 601-610.
43. Tsai WW, Wang Z, Yiu TT, Akdemir KC, Xia W, et al. (2010) TRIM24 links a non-canonical histone signature to breast cancer. Nature 468: 927-932.
44. Kirilly D, Wong JJ, Lim EK, Wang Y, Zhang H, et al. (2011) Intrinsic epigenetic factors cooperate with the steroid hormone ecdysone to govern dendrite pruning in Drosophila. Neuron 72: 86-100.
45. Celniker SE, Dillon LA, Gerstein MB, Gunsalus KC, Henikoff S, et al. (2009) Unlocking the secrets of the genome. Nature 459: 927-930.
46. Cakouros D, Daish TJ, Mills K, Kumar S, (2004) An arginine-histone methyltransferase, CARMER, coordinates ecdysone-mediated apoptosis in Drosophila cells. J Biol Chem 279: 18467-18471.
47. Zsindely N, Pankotai T, Ujfaludi Z, Lakatos D, Komonyi O, et al. (2009) The loss of histone H3 lysine 9 acetylation due to dSAGA-specific dAda2b mutation influences the expression of only a small subset of genes. Nucleic Acids Res 37: 6665-6680.
48. Schagger H, (2006) Tricine-SDS-PAGE. Nat Protoc 1: 16-22.
49. Vincent S, Vonesch JL, Giangrande A, (1996) Glide directs glial fate commitment and cell fate switch between neurones and glia. Development 122: 131-139.
50. Sheffield JB, (2007) ImageJ, a useful tool for biological image processing and analysis. Microscopy and Microanalysis 13: 200-201.
51. Tweedie S, Ashburner M, Falls K, Leyland P, McQuilton P, et al. (2009) FlyBase: enhancing Drosophila Gene Ontology annotations. Nucleic Acids Res 37: D555-559.