-
1
-
-
1942540043
-
Prokaryotic glycoproteins: unexplored but important
-
Messner P, (2004) Prokaryotic glycoproteins: unexplored but important. Journal of Bacteriology 186: 2517-2519.
-
(2004)
Journal of Bacteriology
, vol.186
, pp. 2517-2519
-
-
Messner, P.1
-
2
-
-
53249147141
-
Not just for Eukarya anymore: protein glycosylation in Bacteria and Archaea
-
Abu-Qarn M, Eichler J, Sharon N, (2008) Not just for Eukarya anymore: protein glycosylation in Bacteria and Archaea. Curr Opin Struct Biol 18: 544-550.
-
(2008)
Curr Opin Struct Biol
, vol.18
, pp. 544-550
-
-
Abu-Qarn, M.1
Eichler, J.2
Sharon, N.3
-
3
-
-
0024346543
-
Structure and biosynthesis of prokaryotic glycoproteins
-
Lechner J, Wieland F, (1989) Structure and biosynthesis of prokaryotic glycoproteins. Annu Rev Biochem 58: 173-194.
-
(1989)
Annu Rev Biochem
, vol.58
, pp. 173-194
-
-
Lechner, J.1
Wieland, F.2
-
4
-
-
0037387036
-
Bacterial glycoproteins: functions, biosynthesis and applications
-
Upreti RK, Kumar M, Shankar V, (2003) Bacterial glycoproteins: functions, biosynthesis and applications. Proteomics 3: 363-379.
-
(2003)
Proteomics
, vol.3
, pp. 363-379
-
-
Upreti, R.K.1
Kumar, M.2
Shankar, V.3
-
5
-
-
0027318961
-
Biological roles of oligosaccharides: all of the theories are correct
-
Varki A, (1993) Biological roles of oligosaccharides: all of the theories are correct. Glycobiology 3: 97-130.
-
(1993)
Glycobiology
, vol.3
, pp. 97-130
-
-
Varki, A.1
-
6
-
-
84862220065
-
ProGlycProt: a repository of experimentally characterized prokaryotic glycoproteins
-
Bhat AH, Mondal H, Chauhan JS, Raghava GP, Methi A, et al. (2012) ProGlycProt: a repository of experimentally characterized prokaryotic glycoproteins. Nucleic Acids Res 40: D388-393.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Bhat, A.H.1
Mondal, H.2
Chauhan, J.S.3
Raghava, G.P.4
Methi, A.5
-
7
-
-
0036067107
-
Never say never again: protein glycosylation in pathogenic bacteria
-
Benz I, Schmidt MA, (2002) Never say never again: protein glycosylation in pathogenic bacteria. Molecular Microbiology 45: 267-276.
-
(2002)
Molecular Microbiology
, vol.45
, pp. 267-276
-
-
Benz, I.1
Schmidt, M.A.2
-
8
-
-
0029965091
-
Definition of the full extent of glycosylation of the 45-kilodalton glycoprotein of Mycobacterium tuberculosis
-
Dobos KM, Khoo KH, Swiderek KM, Brennan PJ, Belisle JT, (1996) Definition of the full extent of glycosylation of the 45-kilodalton glycoprotein of Mycobacterium tuberculosis. Journal of Bacteriology 178: 2498-2506.
-
(1996)
Journal of Bacteriology
, vol.178
, pp. 2498-2506
-
-
Dobos, K.M.1
Khoo, K.H.2
Swiderek, K.M.3
Brennan, P.J.4
Belisle, J.T.5
-
9
-
-
67649484321
-
Vaccination with EtpA glycoprotein or flagellin protects against colonization with enterotoxigenic Escherichia coli in a murine model
-
Roy K, Hamilton D, Ostmann MM, Fleckenstein JM, (2009) Vaccination with EtpA glycoprotein or flagellin protects against colonization with enterotoxigenic Escherichia coli in a murine model. Vaccine 27: 4601-4608.
-
(2009)
Vaccine
, vol.27
, pp. 4601-4608
-
-
Roy, K.1
Hamilton, D.2
Ostmann, M.M.3
Fleckenstein, J.M.4
-
10
-
-
79955980572
-
Neisseria gonorrhoeae pilin glycan contributes to CR3 activation during challenge of primary cervical epithelial cells
-
Jennings MP, Jen FE, Roddam LF, Apicella MA, Edwards JL, (2011) Neisseria gonorrhoeae pilin glycan contributes to CR3 activation during challenge of primary cervical epithelial cells. Cell Microbiol 13: 885-896.
-
(2011)
Cell Microbiol
, vol.13
, pp. 885-896
-
-
Jennings, M.P.1
Jen, F.E.2
Roddam, L.F.3
Apicella, M.A.4
Edwards, J.L.5
-
11
-
-
0031809552
-
NetOglyc: prediction of mucin type O-glycosylation sites based on sequence context and surface accessibility
-
Hansen JE, Lund O, Tolstrup N, Gooley AA, Williams KL, et al. (1998) NetOglyc: prediction of mucin type O-glycosylation sites based on sequence context and surface accessibility. Glycoconj J 15: 115-130.
-
(1998)
Glycoconj J
, vol.15
, pp. 115-130
-
-
Hansen, J.E.1
Lund, O.2
Tolstrup, N.3
Gooley, A.A.4
Williams, K.L.5
-
12
-
-
13644257223
-
Prediction, conservation analysis, and structural characterization of mammalian mucin-type O-glycosylation sites
-
Julenius K, Molgaard A, Gupta R, Brunak S, (2005) Prediction, conservation analysis, and structural characterization of mammalian mucin-type O-glycosylation sites. Glycobiology 15: 153-164.
-
(2005)
Glycobiology
, vol.15
, pp. 153-164
-
-
Julenius, K.1
Molgaard, A.2
Gupta, R.3
Brunak, S.4
-
13
-
-
0036370537
-
Prediction of glycosylation across the human proteome and the correlation to protein function
-
Gupta R, Brunak S, (2002) Prediction of glycosylation across the human proteome and the correlation to protein function. Pac Symp Biocomput pp. 310-322.
-
(2002)
Pac Symp Biocomput
, pp. 310-322
-
-
Gupta, R.1
Brunak, S.2
-
14
-
-
38849163717
-
Glycosylation site prediction using ensembles of Support Vector Machine classifiers
-
Caragea C, Sinapov J, Silvescu A, Dobbs D, Honavar V, (2007) Glycosylation site prediction using ensembles of Support Vector Machine classifiers. BMC Bioinformatics 8: 438.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 438
-
-
Caragea, C.1
Sinapov, J.2
Silvescu, A.3
Dobbs, D.4
Honavar, V.5
-
15
-
-
62149135362
-
Prediction of glycosylation sites using random forests
-
Hamby SE, Hirst JD, (2008) Prediction of glycosylation sites using random forests. BMC Bioinformatics 9: 500.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 500
-
-
Hamby, S.E.1
Hirst, J.D.2
-
16
-
-
34247512597
-
Evidence for glycosylation on a DNA-binding protein of Salmonella enterica
-
Hanna ES, Roque-Barreira MC, Bernardes ES, Panunto-Castelo A, Sousa MV, et al. (2007) Evidence for glycosylation on a DNA-binding protein of Salmonella enterica. Microb Cell Fact 6: 11.
-
(2007)
Microb Cell Fact
, vol.6
, pp. 11
-
-
Hanna, E.S.1
Roque-Barreira, M.C.2
Bernardes, E.S.3
Panunto-Castelo, A.4
Sousa, M.V.5
-
17
-
-
0034685684
-
Analysis of post-translational modification of mycobacterial proteins using a cassette expression system
-
Herrmann JL, Delahay R, Gallagher A, Robertson B, Young D, (2000) Analysis of post-translational modification of mycobacterial proteins using a cassette expression system. FEBS Lett 473: 358-62.
-
(2000)
FEBS Lett
, vol.473
, pp. 358-362
-
-
Herrmann, J.L.1
Delahay, R.2
Gallagher, A.3
Robertson, B.4
Young, D.5
-
18
-
-
77950672706
-
Multimethodological approach to identification of glycoproteins from the proteome of Francisella tularensis, an intracellular microorganism
-
Balonova L, Hernychova L, Mann BF, Link M, Bilkova Z, et al. (2010) Multimethodological approach to identification of glycoproteins from the proteome of Francisella tularensis, an intracellular microorganism. J Proteome Res 9: 1995-2005.
-
(2010)
J Proteome Res
, vol.9
, pp. 1995-2005
-
-
Balonova, L.1
Hernychova, L.2
Mann, B.F.3
Link, M.4
Bilkova, Z.5
-
19
-
-
67651163457
-
Detection and characterization of a sialoglycosylated bacterial ABC-type phosphate transporter protein from patients with visceral leishmaniasis
-
Ghoshal A, Mukhopadhyay S, Demine R, Forgber M, Jarmalavicius S, et al. (2009) Detection and characterization of a sialoglycosylated bacterial ABC-type phosphate transporter protein from patients with visceral leishmaniasis. Glycoconj J 26: 675-89.
-
(2009)
Glycoconj J
, vol.26
, pp. 675-689
-
-
Ghoshal, A.1
Mukhopadhyay, S.2
Demine, R.3
Forgber, M.4
Jarmalavicius, S.5
-
20
-
-
80052479968
-
Similarities and differences in the glycosylation mechanisms in prokaryotes and eukaryotes
-
Dell A, Galadari A, Sastre F, Hitchen P, (2010) Similarities and differences in the glycosylation mechanisms in prokaryotes and eukaryotes. Int J Microbiol 2010: 148-178.
-
(2010)
Int J Microbiol
, vol.2010
, pp. 148-178
-
-
Dell, A.1
Galadari, A.2
Sastre, F.3
Hitchen, P.4
-
21
-
-
77958099601
-
Protein glycosylation in bacteria: sweeter than ever
-
Nothaft H, Szymanski CM, (2010) Protein glycosylation in bacteria: sweeter than ever. Nat Rev Microbiol 8: 765-778.
-
(2010)
Nat Rev Microbiol
, vol.8
, pp. 765-778
-
-
Nothaft, H.1
Szymanski, C.M.2
-
22
-
-
77956931053
-
A systematic approach to protein glycosylation analysis: a path through the maze
-
Marino K, Bones J, Kattla JJ, Rudd PM, (2010) A systematic approach to protein glycosylation analysis: a path through the maze. Nat Chem Biol 6: 713-723.
-
(2010)
Nat Chem Biol
, vol.6
, pp. 713-723
-
-
Marino, K.1
Bones, J.2
Kattla, J.J.3
Rudd, P.M.4
-
23
-
-
33646564396
-
Definition of the bacterial N-glycosylation site consensus sequence
-
Kowarik M, Young NM, Numao S, Schulz BL, Hug I, et al. (2006) Definition of the bacterial N-glycosylation site consensus sequence. Embo Journal 25: 1957-1966.
-
(2006)
Embo Journal
, vol.25
, pp. 1957-1966
-
-
Kowarik, M.1
Young, N.M.2
Numao, S.3
Schulz, B.L.4
Hug, I.5
-
24
-
-
79952797070
-
Theoretical and experimental characterization of the scope of protein O-glycosylation in Bacteroides fragilis
-
Fletcher CM, Coyne MJ, Comstock LE, (2011) Theoretical and experimental characterization of the scope of protein O-glycosylation in Bacteroides fragilis. Journal of Biological Chemistry 286: 3219-3226.
-
(2011)
Journal of Biological Chemistry
, vol.286
, pp. 3219-3226
-
-
Fletcher, C.M.1
Coyne, M.J.2
Comstock, L.E.3
-
25
-
-
34250808964
-
An analysis of amino acid sequences surrounding archaeal glycoprotein sequons
-
Abu-Qarn M, Eichler J, (2007) An analysis of amino acid sequences surrounding archaeal glycoprotein sequons. Archaea 2: 73-81.
-
(2007)
Archaea
, vol.2
, pp. 73-81
-
-
Abu-Qarn, M.1
Eichler, J.2
-
26
-
-
1342306245
-
Biases and complex patterns in the residues flanking protein N-glycosylation sites
-
Ben-Dor S, Esterman N, Rubin E, Sharon N, (2004) Biases and complex patterns in the residues flanking protein N-glycosylation sites. Glycobiology 14: 95-101.
-
(2004)
Glycobiology
, vol.14
, pp. 95-101
-
-
Ben-Dor, S.1
Esterman, N.2
Rubin, E.3
Sharon, N.4
-
27
-
-
1342327544
-
Statistical analysis of the protein environment of N-glycosylation sites: implications for occupancy, structure, and folding
-
Petrescu AJ, Milac AL, Petrescu SM, Dwek RA, Wormald MR, (2004) Statistical analysis of the protein environment of N-glycosylation sites: implications for occupancy, structure, and folding. Glycobiology 14: 103-114.
-
(2004)
Glycobiology
, vol.14
, pp. 103-114
-
-
Petrescu, A.J.1
Milac, A.L.2
Petrescu, S.M.3
Dwek, R.A.4
Wormald, M.R.5
-
28
-
-
33751215862
-
N-linked glycosylation of folded proteins by the bacterial oligosaccharyltransferase
-
Kowarik M, Numao S, Feldman MF, Schulz BL, Callewaert N, et al. (2006) N-linked glycosylation of folded proteins by the bacterial oligosaccharyltransferase. Science 314: 1148-1150.
-
(2006)
Science
, vol.314
, pp. 1148-1150
-
-
Kowarik, M.1
Numao, S.2
Feldman, M.F.3
Schulz, B.L.4
Callewaert, N.5
-
29
-
-
77952971734
-
Prediction of GTP interacting residues, dipeptides and tripeptides in a protein from its evolutionary information
-
Chauhan JS, Mishra NK, Raghava GP, (2010) Prediction of GTP interacting residues, dipeptides and tripeptides in a protein from its evolutionary information. BMC Bioinformatics 11: 301.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 301
-
-
Chauhan, J.S.1
Mishra, N.K.2
Raghava, G.P.3
-
30
-
-
80052721796
-
Identification of mannose interacting residues using local composition
-
Agarwal S, Mishra NK, Singh H, Raghava GP, (2011) Identification of mannose interacting residues using local composition. PLoS One 6: e24039.
-
(2011)
PLoS One
, vol.6
-
-
Agarwal, S.1
Mishra, N.K.2
Singh, H.3
Raghava, G.P.4
-
31
-
-
40549105098
-
Prediction of RNA binding sites in a protein using SVM and PSSM profile
-
Kumar M, Gromiha MM, Raghava GP, (2008) Prediction of RNA binding sites in a protein using SVM and PSSM profile. Proteins 71: 189-194.
-
(2008)
Proteins
, vol.71
, pp. 189-194
-
-
Kumar, M.1
Gromiha, M.M.2
Raghava, G.P.3
-
32
-
-
0034044314
-
The PSIPRED protein structure prediction server
-
McGuffin LJ, Bryson K, Jones DT, (2000) The PSIPRED protein structure prediction server. Bioinformatics 16: 404-405.
-
(2000)
Bioinformatics
, vol.16
, pp. 404-405
-
-
McGuffin, L.J.1
Bryson, K.2
Jones, D.T.3
-
33
-
-
26444473604
-
Real value prediction of solvent accessibility in proteins using multiple sequence alignment and secondary structure
-
Garg A, Kaur H, Raghava GP, (2005) Real value prediction of solvent accessibility in proteins using multiple sequence alignment and secondary structure. Proteins 61: 318-324.
-
(2005)
Proteins
, vol.61
, pp. 318-324
-
-
Garg, A.1
Kaur, H.2
Raghava, G.P.3
-
34
-
-
0002714543
-
Making large-Scale SVM Learning Practical
-
B. Schölkopf and C. Burges and A. Smola (ed.), MIT-Press
-
Joachims T, (1999) Making large-Scale SVM Learning Practical In: Advances in Kernel Models- Support Vector Learning, B. Schölkopf and C. Burges and A. Smola (ed.), MIT-Press.
-
(1999)
Advances in Kernel Models - Support Vector Learning
-
-
Joachims, T.1
-
35
-
-
49749089288
-
CyclinPred: a SVM-based method for predicting cyclin protein sequences
-
Kalita MK, Nandal UK, Pattnaik A, Sivalingam A, Ramasamy G, et al. (2008) CyclinPred: a SVM-based method for predicting cyclin protein sequences. PLoS One 3: e2605.
-
(2008)
PLoS One
, vol.3
-
-
Kalita, M.K.1
Nandal, U.K.2
Pattnaik, A.3
Sivalingam, A.4
Ramasamy, G.5
-
36
-
-
77957984965
-
Identification of conformational B-cell Epitopes in an antigen from its primary sequence
-
Ansari HR, Raghava GP, (2010) Identification of conformational B-cell Epitopes in an antigen from its primary sequence. Immunome Res 6: 6.
-
(2010)
Immunome Res
, vol.6
, pp. 6
-
-
Ansari, H.R.1
Raghava, G.P.2
-
37
-
-
79956083561
-
Desulfovibrio desulfuricans PglB homolog possesses oligosaccharyltransferase activity with relaxed glycan specificity and distinct protein acceptor sequence requirements
-
Ielmini MV, Feldman MF, (2011) Desulfovibrio desulfuricans PglB homolog possesses oligosaccharyltransferase activity with relaxed glycan specificity and distinct protein acceptor sequence requirements. Glycobiology 21: 734-742.
-
(2011)
Glycobiology
, vol.21
, pp. 734-742
-
-
Ielmini, M.V.1
Feldman, M.F.2
-
38
-
-
78651248164
-
The Actinobacillus pleuropneumoniae HMW1C-like glycosyltransferase mediates N-linked glycosylation of the Haemophilus influenzae HMW1 adhesin
-
Choi KJ, Grass S, Paek S, St Geme JW, 3rd, Yeo HJ (2010) The Actinobacillus pleuropneumoniae HMW1C-like glycosyltransferase mediates N-linked glycosylation of the Haemophilus influenzae HMW1 adhesin. PLoS One 5: e15888.
-
(2010)
PLoS One
, vol.5
-
-
Choi, K.J.1
Grass, S.2
Paek, S.3
St Geme 3rd, J.W.4
Yeo, H.J.5
-
39
-
-
77957350897
-
Characterization of N-linked protein glycosylation in Helicobacter pullorum
-
Jervis AJ, Langdon R, Hitchen P, Lawson AJ, Wood A, et al. (2010) Characterization of N-linked protein glycosylation in Helicobacter pullorum. Journal of Bacteriology 192: 5228-5236.
-
(2010)
Journal of Bacteriology
, vol.192
, pp. 5228-5236
-
-
Jervis, A.J.1
Langdon, R.2
Hitchen, P.3
Lawson, A.J.4
Wood, A.5
-
40
-
-
34247561641
-
Structural context for protein N-glycosylation in bacteria: The structure of PEB3, an adhesin from Campylobacter jejuni
-
Rangarajan ES, Bhatia S, Watson DC, Munger C, Cygler M, et al. (2007) Structural context for protein N-glycosylation in bacteria: The structure of PEB3, an adhesin from Campylobacter jejuni. Protein Sci 16: 990-995.
-
(2007)
Protein Sci
, vol.16
, pp. 990-995
-
-
Rangarajan, E.S.1
Bhatia, S.2
Watson, D.C.3
Munger, C.4
Cygler, M.5
-
41
-
-
77950861521
-
Comparative structural biology of eubacterial and archaeal oligosaccharyltransferases
-
Maita N, Nyirenda J, Igura M, Kamishikiryo J, Kohda D, (2010) Comparative structural biology of eubacterial and archaeal oligosaccharyltransferases. Journal of Biological Chemistry 285: 4941-4950.
-
(2010)
Journal of Biological Chemistry
, vol.285
, pp. 4941-4950
-
-
Maita, N.1
Nyirenda, J.2
Igura, M.3
Kamishikiryo, J.4
Kohda, D.5
-
42
-
-
58049214870
-
Extreme substrate promiscuity of the Neisseria oligosaccharyl transferase involved in protein O-glycosylation
-
Faridmoayer A, Fentabil MA, Haurat MF, Yi W, Woodward R, et al. (2008) Extreme substrate promiscuity of the Neisseria oligosaccharyl transferase involved in protein O-glycosylation. J Biol Chem 283: 34596-34604.
-
(2008)
J Biol Chem
, vol.283
, pp. 34596-34604
-
-
Faridmoayer, A.1
Fentabil, M.A.2
Haurat, M.F.3
Yi, W.4
Woodward, R.5
-
43
-
-
77955433290
-
Protein glycosylation in Archaea: sweet and extreme
-
Calo D, Kaminski L, Eichler J, (2010) Protein glycosylation in Archaea: sweet and extreme. Glycobiology 20: 1065-1076.
-
(2010)
Glycobiology
, vol.20
, pp. 1065-1076
-
-
Calo, D.1
Kaminski, L.2
Eichler, J.3
|