Comparative cytogenetic mapping of Sox2 and Sox14 in cichlid fishes and inferences on the genomic organization of both genes in vertebrates

Chromosome Research

Volumn 19, Issue 5, 2011, Pages 657-667

  Mazzuchelli, Juliana ^a   Yang, Fengtang ^b   Kocher, Thomas D ^c   Martins, Cesar ^a  

^a SÃO PAULO STATE UNIVERSITY UNESP   (Brazil)

^b WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^c University of Maryland   (United States)

Author keywords

chromosome; Cichlidae; genome evolution; molecular cytogenetics

Indexed keywords

TRANSCRIPTION FACTOR SOX; TRANSCRIPTION FACTOR SOX14; TRANSCRIPTION FACTOR SOX2; UNCLASSIFIED DRUG;

ARTICLE; CICHLID; COMPARATIVE GENE MAPPING; CYTOGENETICS; ETROPLUS MACULATUS; FISH GENETICS; GENE LOCATION; GENE REARRANGEMENT; GENETIC CONSERVATION; GENETIC VARIABILITY; GENOME ANALYSIS; KARYOTYPE; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; ORTHOLOGY; PHYLOGENY; PRIORITY JOURNAL; PSEUDOCRENILABRINAE; SPECIES; SYNTENY; VERTEBRATE;

ANIMALS; CHROMOSOME MAPPING; CICHLIDS; FISH PROTEINS; GENOME; HUMANS; IN SITU HYBRIDIZATION, FLUORESCENCE; PHYLOGENY; SOXB1 TRANSCRIPTION FACTORS; SOXB2 TRANSCRIPTION FACTORS; SPECIES SPECIFICITY; VERTEBRATES;

CICHLIDAE; ETROPLINAE; ETROPLUS MACULATUS; PISCES; PSEUDOCRENILABRINAE; VERTEBRATA;

EID: 80052443977     PISSN: 09673849     EISSN: 15736849     Source Type: Journal    
DOI: 10.1007/s10577-011-9225-4     Document Type: Article

References (25)

1. LAC Bertollo CS Takahashi O Moreira-Filho 1978 Cytotaxonomic consideration on Hoplias lacerdae (Pisces, Erythrinidae) Braz J Genet 1 103 120 (Pubitemid 9157738)
2. J Bowles G Schepers P Koopman 2000 Phylogeny of the Sox family of developmental transcription factors based on sequence and structural indicators Dev Biol 227 239 255 11071752 10.1006/dbio.2000.9883 1:CAS:528: DC%2BD3cXnvVelu7g%3D
3. A Cnaani BY Lee C Ozouf-Costaz C Bonillo JF Baroiller H D'Cotta TD Kocher 2007 Mapping of Sox2 and Sox14 in tilapia (Oreochromis spp.) Sex Dev 1 207 210 18391531 10.1159/000102109 1:STN:280:DC%2BD1c3jsVantA%3D%3D (Pubitemid 47237002)
4. J Collignon S Sockanathan A Hacker, et al. 1996 A comparison of the properties of Sox-3 with Sry and two related genes, Sox-1 and Sox-2 Development 122 509 520 8625802 1:CAS:528:DyaK28XhtlemtLw%3D (Pubitemid 26054140)
5. B Guo C Tong S He 2009 Sox genes evolution in closely related young tetraploid cyprinid fishes and their diploid relative Gene 439 102 112 19268695 10.1016/j.gene.2009.02.016 1:CAS:528:DC%2BD1MXls1eksL8%3D
6. SIE Guth M Wegner 2008 Having it both ways: Sox protein function between conservation and innovation Cell Mol Life Sci 65 3000 3018 18516494 10.1007/s00018-008-8138-7 1:CAS:528:DC%2BD1cXhtFOjtrrI
7. M Hargrave K James K Nield, et al. 2000 Fine mapping of the neurally expressed gene Sox14 to human 3q23, relative to three congenital diseases Hum Genet 106 432 439 10830911 10.1007/s004390000266 1:CAS:528:DC%2BD3cXktVOmurc%3D (Pubitemid 30237511)
8. Hope RM, Cooper S, Wainwright B (1990) Globin macromolecular sequence in marsupials and monotremes. In: Graves JAM, Hope RM, Cooper DW (eds) Mammals from pouches and eggs: genetic breeding and the evolution of marsupials and monotremes. CSIRO Press, Melbourne, pp 147-171
9. M Howard-Ashby SC Materna CT Brown L Chen RA Cameron EH Davidson 2006 Gene families encoding transcription factors expressed in early development of Strongylocentrotus purpuratus Dev Biol 300 90 107 17054934 10.1016/j.ydbio.2006. 08.033 1:CAS:528:DC%2BD28Xht1KrtrfL (Pubitemid 44826996)
10. JC Kiefer 2007 Back to basics: Sox genes Dev Dyn 236 2356 2366 17584862 10.1002/dvdy.21218 1:CAS:528:DC%2BD2sXhtV2hs7jO
11. PJ Kirby PD Waters M Delbridge M Svartman AN Stewart 2002 Cloning and mapping of platypus Sox2 and Sox14: insights into Sox group B evolution Cytogenet Genome Res 98 96 100 12584449 10.1159/000068539 1:CAS:528: DC%2BD3sXitVygt7o%3D (Pubitemid 37499928)
12. M Kishi K Mizuseki N Sasai, et al. 2000 Requirement of Sox2-mediated signaling for differentiation of early Xenopus neuroectoderm Development 127 791 800 10648237 1:CAS:528:DC%2BD3cXkt1aku70%3D (Pubitemid 30129025)
13. P Koopman G Schepers S Brenner B Venkatesh 2004 Origin and diversity of the Sox transcription factor gene family: genome-wide analysis in Fugu rubripes Gene 328 177 186 15019997 10.1016/j.gene.2003.12.008 1:CAS:528: DC%2BD2cXitVKltrY%3D (Pubitemid 38352894)
14. C Larroux GN Luke P Koopman DS Rokhsar SM Shimeld BM Degnan 2008 Genesis and expansion of metazoan transcription factor gene classes Mol Biol Evol 25 980 996 18296413 10.1093/molbev/msn047 1:CAS:528:DC%2BD1cXlvVKhu7s%3D
15. C McKimmie G Woerfel S Russell 2005 Conserved genomic organisation of group B Sox genes in insects BMC Genet 19 6 26
16. D Meulemans M Bronner-Fraser 2007 The amphioxus SoxB family: implications for the evolution of vertebrate placodes Int J Biol Sci 3 356 364 17713598 1:CAS:528:DC%2BD2sXhtVOmsrvP (Pubitemid 47439738)
17. Y Okuda H Yoda M Uchikawa, et al. 2006 Comparative genomic and expression analysis of group B1 Sox genes in zebrafish indicates their diversification during vertebrate evolution Dev Dyn 235 811 825 16408288 10.1002/dvdy.20678 1:CAS:528:DC%2BD28XjtFehurw%3D
18. AB Poletto IA Ferreira C Martins 2010 The B chromosomes of the African cichlid fish Haplochromis obliquidens harbour 18S rRNA gene copies BMC Genet 11 1 20051104 10.1186/1471-2156-11-1
19. AB Poletto IA Ferreira DC Cabral-de-Mello, et al. 2010 Chromosome differentiation patterns during cichlid fish evolution BMC Genet 11 50 20550671 10.1186/1471-2156-11-50
20. J Popovic M Stevanovic 2009 Remarkable evolutionary conservation of Sox14 orthologues J Genet 88 15 24 19417540 10.1007/s12041-009-0003-4 1:CAS:528:DC%2BD1MXmtFajtrk%3D
21. Y Satou N Satoh 2005 Cataloging transcription factor and major signaling molecule genes for functional genomic studies in Ciona intestinalis Dev Genes Evol 215 580 596 16252120 10.1007/s00427-005-0016-9 1:CAS:528:DC%2BD2MXhtFyntrzK (Pubitemid 41683426)
22. WL Smith P Chakrabarty JS Sparks 2008 Phylogeny, taxonomy, and evolution of Neotropical cichlids (Teleostei: Cichlidae: Cichlinae) Cladistics 24 625 641 10.1111/j.1096-0031.2008.00210.x
23. JS Taylor I Braasch T Frickey A Meyer Y Van de Peer 2003 Genome duplication, a trait shared by 22,000 species of ray-finned fish Genome Res 13 382 390 12618368 10.1101/gr.640303 1:CAS:528:DC%2BD3sXit1Wgtrc%3D (Pubitemid 36395395)
24. M Uchikawa Y Kamachi H Kondoh 1999 Two distinct subgroups of Group B Sox genes for transcriptional activators and repressors: their expression during embryonic organogenesis of the chicken Mech Dev 84 103 120 10473124 10.1016/S0925-4773(99)00083-0 1:CAS:528:DyaK1MXjs1ShtLk%3D (Pubitemid 29331657)
25. L Wei D Cheng D Li, et al. 2011 Identification and characterization of Sox genes in the silkworm, Bombyx mori Mol Biol Rep 38 3573 3584 21161409 10.1007/s11033-010-0468-5 1:CAS:528:DC%2BC3MXlsVGitL0%3D