Influenza a viruses from wild birds in Guatemala belong to the North American lineage

PLoS ONE

Volumn 7, Issue 3, 2012, Pages

  González Reiche, Ana S ^a,b   Morales Betoulle, María E ^b   Alvarez, Danilo ^b   Betoulle, Jean Luc ^b,c   Müller, Maria L ^b   Sosa, Silvia M ^b   Perez, Daniel R ^a  

^a UNIVERSITY OF MARYLAND   (United States)

^b UNIVERSIDAD DEL VALLE DE GUATEMALA   (Guatemala)

^c Fundación Para el Ecodesarrollo y la Conservación FUNDAECO   (Guatemala)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL TISSUE; ARTICLE; BIRD; CLOACA; CONTROLLED STUDY; DUCK; FEMALE; GUATEMALA; INFLUENZA VIRUS A; INFLUENZA VIRUS A H11N2; INFLUENZA VIRUS A H3N8; INFLUENZA VIRUS A H5N3; INFLUENZA VIRUS A H5N4; INFLUENZA VIRUS A H7N9; INFLUENZA VIRUS A H8N4; MALE; MIGRATORY SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; TRACHEA; VIRUS DETECTION; VIRUS ISOLATION; WILD SPECIES; ANIMAL; ANIMAL DISEASE; AVIAN INFLUENZA; BIOLOGICAL MODEL; CLUSTER ANALYSIS; DEMOGRAPHY; DNA SEQUENCE; GENETICS; GENOTYPE; HEALTH SURVEY; METHODOLOGY; MOLECULAR GENETICS; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; VIROLOGY;

ANAS; ANAS DISCORS; AVES; AVIAN INFLUENZA VIRUS; INFLUENZA A VIRUS;

ANIMALS; BASE SEQUENCE; CLUSTER ANALYSIS; DEMOGRAPHY; DUCKS; GENOTYPE; GUATEMALA; INFLUENZA A VIRUS; INFLUENZA IN BIRDS; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PHYLOGENY; POPULATION SURVEILLANCE; REAL-TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA;

EID: 84863416413     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0032873     Document Type: Article

References (72)

1. Chen H, Smith GJ, Zhang SY, Qin K, Wang J, et al. (2005) Avian flu: H5N1 virus outbreak in migratory waterfowl. Nature 436: 191-192.
2. Feare CJ, (2010) Role of wild birds in the spread of highly pathogenic avian influenza virus H5N1 and implications for global surveillance. Avian Dis 54: 201-212.
3. Feare CJ, (2007) The role of wild birds in the spread of HPAI H5N1. Avian Dis 51: 440-447.
4. Munster VJ, Fouchier RA, (2009) Avian influenza virus: of virus and bird ecology. Vaccine 27: 6340-6344.
5. Olsen B, Munster VJ, Wallensten A, Waldenstrom J, Osterhaus AD, et al. (2006) Global patterns of influenza a virus in wild birds. Science 312: 384-388.
6. Alexander DJ, (2000) A review of avian influenza in different bird species. Vet Microbiol 74: 3-13.
7. Stallknecht DE, Shane SM, (1988) Host range of avian influenza virus in free-living birds. Vet Res Commun 12: 125-141.
8. Gronesova P, Kabat P, Trnka A, Betakova T, (2008) Using nested RT-PCR analyses to determine the prevalence of avian influenza viruses in passerines in western Slovakia, during summer 2007. Scandinavian Journal of Infectious Diseases 40: 954-957.
9. Fuller T, Saatchi S, Curd E, Toffelmier E, Thomassen H, et al. (2010) Mapping the risk of avian influenza in wild birds in the US. BMC Infectious Diseases 10: 187.
10. Peterson AT, Bush SE, Spackman E, Swayne DE, Ip HS, (2008) Influenza A virus infections in land birds, People's Republic of China. Emerging infectious diseases 14: 1644-1646.
11. Roy G, Burton J, Lecomte J, Boudreault A, (1983) [Role of passerine birds in the ecology of influenza viruses]. Rev Can Biol Exp 42: 73-81.
12. Kaleta EF, Honicke A, (2004) Review of the literature on avian influenza A viruses in pigeons and experimental studies on the susceptibility of domestic pigeons to influenza A viruses of the haemagglutinin subtype H7. Dtsch Tierarztl Wochenschr 111: 467-472.
13. Ibrahim HM, Awang IP, Alexander DJ, Manvell RJ, Aini I, et al. (1990) Isolations of influenza A viruses from passerine birds in Malaysia. Vet Rec 127: 528.
14. Nestorowicz A, Kawaoka Y, Bean WJ, Webster RG, (1987) Molecular analysis of the hemagglutinin genes of Australian H7N7 influenza viruses: role of passerine birds in maintenance or transmission? Virology 160: 411-418.
15. Boyce WM, Sandrock C, Kreuder-Johnson C, Kelly T, Cardona C, (2009) Avian influenza viruses in wild birds: a moving target. Comp Immunol Microbiol Infect Dis 32: 275-286.
16. Dierauf LA, Karesh WB, Ip HS, Gilardi KV, Fischer JR, (2006) Avian influenza virus and free-ranging wild birds. J Am Vet Med Assoc 228: 1877-1882.
17. Alvarez P, Mattiello R, Rivailler P, Pereda A, Davis CT, et al. (2010) First isolation of an H1N1 avian influenza virus from wild terrestrial non-migratory birds in Argentina. Virology 396: 76-84.
18. Krauss S, Walker D, Pryor SP, Niles L, Chenghong L, et al. (2004) Influenza A viruses of migrating wild aquatic birds in North America. Vector Borne Zoonotic Dis 4: 177-189.
19. Pereda AJ, Uhart M, Perez AA, Zaccagnini ME, La Sala L, et al. (2008) Avian influenza virus isolated in wild waterfowl in Argentina: evidence of a potentially unique phylogenetic lineage in South America. Virology 378: 363-370.
20. Munster VJ, Baas C, Lexmond P, Waldenstrom J, Wallensten A, et al. (2007) Spatial, temporal, and species variation in prevalence of influenza A viruses in wild migratory birds. PLoS Pathog 3: e61.
21. Bahl J, Vijaykrishna D, Holmes EC, Smith GJ, Guan Y, (2009) Gene flow and competitive exclusion of avian influenza A virus in natural reservoir hosts. Virology 390: 289-297.
22. Makarova NV, Kaverin NV, Krauss S, Senne D, Webster RG, (1999) Transmission of Eurasian avian H2 influenza virus to shorebirds in North America. J Gen Virol 80: 3167-3171.
23. Krauss S, Obert CA, Franks J, Walker D, Jones K, et al. (2007) Influenza in migratory birds and evidence of limited intercontinental virus exchange. PLoS Pathog 3: e167.
24. Senne DA, (2007) Avian influenza in North and South America, 2002-2005. Avian Dis 51: 167-173.
25. Senne DA, (2003) Avian influenza in the Western Hemisphere including the Pacific Islands and Australia. Avian Dis 47: 798-805.
26. Greenberg R, (1993) Bridging the Americas: Migratory birds in Costa Rica and Panama Washington, D.C. Smithsonian Migratory Bird Center.
27. Cerezo A, Robbins CS, Dowell B, (2009) [Modified-habitat use by tropical forest-dependent birds in the Caribbean region of Guatemala]. Rev Biol Trop 57: 401-419.
28. Cerezo AM, (2001) (2001) Determinación y compraración de los ensambles de aves migratorias y residentes en cuatro hábitats en cinco fincas ganaderas, municipios de Puerto Barrios y Livingston, departamento de Izabal: Universidad del Valle de Guatemala.
29. Spackman E, McCracken KG, Winker K, Swayne DE, (2006) H7N3 avian influenza virus found in a South American wild duck is related to the Chilean 2002 poultry outbreak, contains genes from equine and North American wild bird lineages, and is adapted to domestic turkeys. J Virol 80: 7760-7764.
30. Spackman E, McCracken KG, Winker K, Swayne DE, (2007) An avian influenza virus from waterfowl in South America contains genes from North American avian and equine lineages. Avian Dis 51: 273-274.
31. Ghersi BM, Blazes DL, Icochea E, Gonzalez RI, Kochel T, et al. (2009) Avian influenza in wild birds, central coast of Peru. Emerg Infect Dis 15: 935-938.
32. Komar N, Clark GG, (2006) West Nile virus activity in Latin America and the Caribbean. Rev Panam Salud Publica 19: 112-117.
33. Melville DS, Shortridge KF, (2006) Spread of H5N1 avian influenza virus: an ecological conundrum. Lett Appl Microbiol 42: 435-437.
34. Fouchier RA, Munster VJ, (2009) Epidemiology of low pathogenic avian influenza viruses in wild birds. Rev Sci Tech 28: 49-58.
35. Spackman E, Senne DA, Myers TJ, Bulaga LL, Garber LP, et al. (2002) Development of a real-time reverse transcriptase PCR assay for type A influenza virus and the avian H5 and H7 hemagglutinin subtypes. J Clin Microbiol 40: 3256-3260.
36. Perdue ML, Suarez DL, (2000) Structural features of the avian influenza virus hemagglutinin that influence virulence. Vet Microbiol 74: 77-86.
37. Dugan VG, Dunham EJ, Jin G, Sheng ZM, Kaser E, et al. (2011) Phylogenetic analysis of low pathogenicity H5N1 and H7N3 influenza A virus isolates recovered from sentinel, free flying, wild mallards at one study site during 2006. Virology 17 (1): 98-105.
38. Webster RG, Bean WJ, Gorman OT, Chambers TM, Kawaoka Y, (1992) Evolution and ecology of influenza A viruses. Microbiol Rev 56: 152-179.
39. Pedersen K, Swafford SR, DeLiberto TJ, (2010) Low pathogenicity avian influenza subtypes isolated from wild birds in the United States, 2006-2008. Avian diseases 54: 405-410.
40. Hansbro PM, Warner S, Tracey JP, Arzey KE, Selleck P, et al. (2010) Surveillance and analysis of avian influenza viruses, Australia. Emerg Infect Dis 16: 9.
41. Wilcox BR, Knutsen GA, Berdeen J, Goekjian V, Poulson R, et al. (2011) Influenza-A Viruses in Ducks in Northwestern Minnesota: Fine Scale Spatial and Temporal Variation in Prevalence and Subtype Diversity. PLoS ONE 6: e24010.
42. Hanson BA, Swayne DE, Senne DA, Lobpries DS, Hurst J, et al. (2005) Avian Influenza Viruses and Paramyxoviruses in Wintering and Resident Ducks in Texas. Journal of wildlife diseases 41: 624-628.
43. Stallknecht DE, Shane SM, Zwank PJ, Senne DA, Kearney MT, (1990) Avian Influenza Viruses from Migratory and Resident Ducks of Coastal Louisiana. Avian Diseases 34: 398-405.
44. Ferro PJ, Budke CM, Peterson MJ, Cox D, Roltsch E, et al. (2010) Multiyear surveillance for avian influenza virus in waterfowl from wintering grounds, Texas coast, USA. Emerging infectious diseases 16: 1224-1230.
45. Wallensten A, Munster VJ, Latorre-Margalef N, Brytting M, Elmberg J, et al. (2007) Surveillance of influenza A virus in migratory waterfowl in northern Europe. Emerging infectious diseases 13: 404-411.
46. Carbonell M, Garvin J, (2002) Know your ducks: A waterfowl identification guide for the Caribbean, Central America and Northern South America Memphis, TN Ducks Unlimited.
47. Rappole JH, Morton ES, Lovejoy TE, Ruos JL, (1995) Nearctic avian migrants in the Neotropics: maps, appendices, and bibliography Washington, D.C. Conservation and Research Center, National Zoological Park, Smithsonian Institution.
48. Sigüenza de Micheo R, Universidad de San Carlos de Guatemala, editor (2007) Informe de conteos de Anátidas en Guatemala: Temporada 2006-2007. Fundación Defensores de la Naturaleza EdB Guatemala Ducks Unlimited.
49. Stallknecht DE, Brown JD, (2007) Wild birds and the epidemiology of avian Influenza. Journal of wildlife diseases 43: S15-20.
50. Ferro PJ, Peterson MJ, Merendino T, Nelson M, Lupiani B, (2010) Comparison of real-time reverse transcription-PCR and virus isolation for estimating prevalence of avian influenza virus in hunter-harvested wild birds at waterfowl wintering grounds along the Texas mid-Gulf Coast (2005-2006 through 2008-2009). Avian diseases 54: 655-659.
51. Lee C-w, Senne DA, Linares JA, Woolcock PR, Stallknecht DE, et al. (2004) Characterization of recent H5 subtype avian influenza viruses from US poultry. Avian Pathology 33: 288-297.
52. Obenauer JC, Denson J, Mehta PK, Su X, Mukatira S, et al. (2006) Large-scale sequence analysis of avian influenza isolates. Science 311: 1576-1580.
53. Cuevas-Dominguez EA, González-Guzmán S, Quintana-López JA, Loza-Rubio E, González-Rebeles C, et al. (2009) Detección de orthomyxovirus H7N3 en anátidos del Estado de México. REDVET Rev Electron Vet 10 (4).
54. Suarez DL, Senne DA, Banks J, Brown IH, Essen SC, et al. (2004) Recombination resulting in virulence shift in avian influenza outbreak, Chile. Emerg Infect Dis 10: 693-699.
55. Gammonley JH, Fredrickson LH, (1995) Life history and management of the blue-winged teal Waterfowl management Handbook Washington, D.C. U.S. Dept of the Interior.
56. Howell SNG, Webb S, (1995) A guide to the birds of Mexico and northern Central America New York Oxford University Press.
57. Stotz DF, Fitzpatrick JW, Parker TA 3rd, Moskovitz DK, (1996) Neotropical birds: Ecology and conservation Chicago University of Chicago Press.
58. OIE (2011) Update on hyghly pathogenic avian influenza in animals (type H5 and H7).
59. Kelly TR, Hawkins MG, Sandrock CE, Boyce WM, (2008) A review of highly pathogenic avian influenza in birds, with an emphasis on Asian H5N1 and recommendations for prevention and control. J Avian Med Surg 22: 1-16.
60. Andrade CR, Ibiapina Cda C, Champs NS, Toledo Junior AC, Picinin IF, (2009) Avian influenza: the threat of the 21st century. J Bras Pneumol 35: 470-479.
61. Artois M, Bicout D, Doctrinal D, Fouchier R, Gavier-Widen D, et al. (2009) Outbreaks of highly pathogenic avian influenza in Europe: the risks associated with wild birds. Rev Sci Tech 28: 69-92.
62. de Jong MC, Stegeman A, van der Goot J, Koch G, (2009) Intra- and interspecies transmission of H7N7 highly pathogenic avian influenza virus during the avian influenza epidemic in The Netherlands in 2003. Rev Sci Tech 28: 333-340.
63. Eagles D, Siregar ES, Dung DH, Weaver J, Wong F, et al. (2009) H5N1 highly pathogenic avian influenza in Southeast Asia. Rev Sci Tech 28: 341-348.
64. Globig A, Staubach C, Beer M, Koppen U, Fiedler W, et al. (2009) Epidemiological and ornithological aspects of outbreaks of highly pathogenic avian influenza virus H5N1 of Asian lineage in wild birds in Germany, 2006 and 2007. Transbound Emerg Dis 56: 57-72.
65. Lupiani B, Reddy SM, (2009) The history of avian influenza. Comp Immunol Microbiol Infect Dis 32: 311-323.
66. Villarreal C, (2009) Avian influenza in Mexico. Rev Sci Tech 28: 261-265.
67. Neumann G, Chen H, Gao GF, Shu Y, Kawaoka Y, (2010) H5N1 influenza viruses: outbreaks and biological properties. Cell Res 20: 51-61.
68. Senne DA, (2010) Avian influenza in North and South America, the Caribbean, and Australia, 2006-2008. Avian diseases 54: 179-186.
69. Webster RG, Cox NJ, Sthor K, (2002) WHO Manual on Animal Influenza Diagnosis and Surveillance. In: Organization WH, editors. Department of Communicable Disease Surveillance and Response.
70. Spackman E, Suarez DL, (2008) Avian influenza virus RNA extraction from tissue and swab material. Methods Mol Biol 436: 13-18.
71. Song H, Nieto GR, Perez DR, (2007) A new generation of modified live-attenuated avian influenza viruses using a two-strategy combination as potential vaccine candidates. J Virol 81: 9238-9248.
72. Hoffmann E, Stech J, Guan Y, Webster RG, Perez DR, (2001) Universal primer set for the full-length amplification of all influenza A viruses. Archives of virology 146: 2275-2289.