메뉴 건너뛰기




Volumn 7, Issue 3, 2012, Pages

The influence of intense chemical pollution on the community composition, diversity and abundance of anammox bacteria in the Jiaojiang Estuary (China)

Author keywords

[No Author keywords available]

Indexed keywords

NITRATE; NITROBENZENE; ORGANIC COMPOUND; RNA 16S; BACTERIAL DNA; NITROBENZENE DERIVATIVE;

EID: 84863376263     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0033826     Document Type: Article
Times cited : (43)

References (47)
  • 1
    • 0017410731 scopus 로고
    • Two kinds of lithotrophs missing in nature
    • Broda E, (1977) Two kinds of lithotrophs missing in nature. Z Allg Microbiol 17: 491-493.
    • (1977) Z Allg Microbiol , vol.17 , pp. 491-493
    • Broda, E.1
  • 2
  • 3
    • 34248178641 scopus 로고    scopus 로고
    • New processes and players in the nitrogen cycle: the microbial ecology of anaerobic and archaeal ammonia oxidation
    • Francis CA, Beman JM, Kuypers MMM, (2007) New processes and players in the nitrogen cycle: the microbial ecology of anaerobic and archaeal ammonia oxidation. ISME J 1: 19-27.
    • (2007) ISME J , vol.1 , pp. 19-27
    • Francis, C.A.1    Beman, J.M.2    Kuypers, M.M.M.3
  • 4
    • 40949090557 scopus 로고    scopus 로고
    • Anammox bacteria: from discovery to application
    • Kuenen JG, (2008) Anammox bacteria: from discovery to application. Nat Rev Microbial 6: 320-326.
    • (2008) Nat Rev Microbial , vol.6 , pp. 320-326
    • Kuenen, J.G.1
  • 6
    • 0036197004 scopus 로고    scopus 로고
    • Production of N2 through anaerobic ammonium oxidation coupled to nitrate reduction in marine sediments
    • Dalsgaard T, Thamdrup B, (2002) Production of N2 through anaerobic ammonium oxidation coupled to nitrate reduction in marine sediments. Appl Environ Microbiol 68: 1312-1318.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1312-1318
    • Dalsgaard, T.1    Thamdrup, B.2
  • 7
    • 17444397420 scopus 로고    scopus 로고
    • Anaerobic ammonium oxidation by nitrite (anammox): Implications for N2 production in coastal marine sediments
    • Engström P, Dalsgaard T, Hulth S, Aller RC, (2005) Anaerobic ammonium oxidation by nitrite (anammox): Implications for N2 production in coastal marine sediments. Geochim Cosmochim Acta 69: 2057-2065.
    • (2005) Geochim Cosmochim Acta , vol.69 , pp. 2057-2065
    • Engström, P.1    Dalsgaard, T.2    Hulth, S.3    Aller, R.C.4
  • 9
    • 18144367022 scopus 로고    scopus 로고
    • Massive nitrogen loss from the Benguela upwelling system through anaerobic ammonium oxidation
    • Kuypers MMM, Lavik G, Woebken D, Schmid MC, Fuchs BM, et al. (2005) Massive nitrogen loss from the Benguela upwelling system through anaerobic ammonium oxidation. Proc Natl Acad Sci USA 102: 6478-6483.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 6478-6483
    • Kuypers, M.M.M.1    Lavik, G.2    Woebken, D.3    Schmid, M.C.4    Fuchs, B.M.5
  • 10
    • 33748328532 scopus 로고    scopus 로고
    • Anaerobic ammonium oxidation in the oxygen-deficient waters off northern Chile
    • Thamdrup B, Dalsgaard T, Jensen MM, Ulloa O, Farias L, et al. (2006) Anaerobic ammonium oxidation in the oxygen-deficient waters off northern Chile. Limnol Oceanogr 51: 2145-2156.
    • (2006) Limnol Oceanogr , vol.51 , pp. 2145-2156
    • Thamdrup, B.1    Dalsgaard, T.2    Jensen, M.M.3    Ulloa, O.4    Farias, L.5
  • 13
    • 33845714911 scopus 로고    scopus 로고
    • Candidatus 'Anammoxoglobus propionicus' a new propionate oxidizing species of anaerobic ammonium oxidizing bacteria
    • Kartal B, Rattray J, van Niftrik LA, van de Vossenberg J, Schmid MC, et al. (2007) Candidatus 'Anammoxoglobus propionicus' a new propionate oxidizing species of anaerobic ammonium oxidizing bacteria. Syst Appl Microbiol 30: 39-49.
    • (2007) Syst Appl Microbiol , vol.30 , pp. 39-49
    • Kartal, B.1    Rattray, J.2    van Niftrik, L.A.3    van de Vossenberg, J.4    Schmid, M.C.5
  • 15
    • 52949144536 scopus 로고    scopus 로고
    • Diversity of ammonium-oxidizing bacteria in a granular sludge anaerobic ammonium-oxidizing (anammox) reactor
    • Quan ZX, Rhee SK, Zuo JE, Yang Y, Bae JW, et al. (2008) Diversity of ammonium-oxidizing bacteria in a granular sludge anaerobic ammonium-oxidizing (anammox) reactor. Environ Microbiol 10: 3130-3139.
    • (2008) Environ Microbiol , vol.10 , pp. 3130-3139
    • Quan, Z.X.1    Rhee, S.K.2    Zuo, J.E.3    Yang, Y.4    Bae, J.W.5
  • 17
    • 0034096495 scopus 로고    scopus 로고
    • Molecular evidence for genus level diversity of bacteria capable of catalyzing anaerobic ammonium oxidation
    • Schmid MC, Twachtmann U, Klein M, Strous M, Juretschko S, et al. (2000) Molecular evidence for genus level diversity of bacteria capable of catalyzing anaerobic ammonium oxidation. Syst Appl Microbiol 23: 93-106.
    • (2000) Syst Appl Microbiol , vol.23 , pp. 93-106
    • Schmid, M.C.1    Twachtmann, U.2    Klein, M.3    Strous, M.4    Juretschko, S.5
  • 18
    • 10744230197 scopus 로고    scopus 로고
    • Candidatus 'Scalindua brodae', sp. nov., Candidatus 'Scalindua wagneri', sp. nov., two new species of anaerobic ammonium oxidizing bacteria
    • Schmid MC, Walsh K, Webb RI, Rijpstra WI, van de Pas-Schoonen K, et al. (2003) Candidatus 'Scalindua brodae', sp. nov., Candidatus 'Scalindua wagneri', sp. nov., two new species of anaerobic ammonium oxidizing bacteria. Syst Appl Microbiol 26: 529-538.
    • (2003) Syst Appl Microbiol , vol.26 , pp. 529-538
    • Schmid, M.C.1    Walsh, K.2    Webb, R.I.3    Rijpstra, W.I.4    van de Pas-Schoonen, K.5
  • 19
    • 77957295884 scopus 로고    scopus 로고
    • Identification and quantification of anammox bacteria in eight nitrogen removal reactors
    • Hu BL, Zheng P, Tang CJ, Chen JW, van der Biezen E, et al. (2010) Identification and quantification of anammox bacteria in eight nitrogen removal reactors. Water Res 44: 5014-5020.
    • (2010) Water Res , vol.44 , pp. 5014-5020
    • Hu, B.L.1    Zheng, P.2    Tang, C.J.3    Chen, J.W.4    van der Biezen, E.5
  • 20
    • 33750042897 scopus 로고    scopus 로고
    • Molecular evidence for the broad distribution of anaerobic ammonium-oxidizing bacteria in freshwater and marine sediments
    • Penton CR, Devol AH, Tiedje JM, (2006) Molecular evidence for the broad distribution of anaerobic ammonium-oxidizing bacteria in freshwater and marine sediments. Appl Environ Microbiol 72: 6829-6832.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 6829-6832
    • Penton, C.R.1    Devol, A.H.2    Tiedje, J.M.3
  • 21
    • 52949102049 scopus 로고    scopus 로고
    • A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones
    • Woebken D, Lam P, Kuypers MMM, Naqvi SWJ, Kartal B, et al. (2008) A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones. Environ Microbiol 10: 3106-3119.
    • (2008) Environ Microbiol , vol.10 , pp. 3106-3119
    • Woebken, D.1    Lam, P.2    Kuypers, M.M.M.3    Naqvi, S.W.J.4    Kartal, B.5
  • 23
    • 66249110685 scopus 로고    scopus 로고
    • Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne Estuary, United Kingdom)
    • Dong LF, Smith CJ, Papaspyrou S, Stott A, Osborn AM, et al. (2009) Changes in benthic denitrification, nitrate ammonification, and anammox process rates and nitrate and nitrite reductase gene abundances along an estuarine nutrient gradient (the Colne Estuary, United Kingdom). Appl Environ Microbiol 75: 3171-3179.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 3171-3179
    • Dong, L.F.1    Smith, C.J.2    Papaspyrou, S.3    Stott, A.4    Osborn, A.M.5
  • 24
    • 37849042824 scopus 로고    scopus 로고
    • Detection of anammox activity and diversity of anammox bacteria-related 16S rRNA genes in coastal marine sediment in Japan
    • Amano T, Yoshinaga I, Okada K, Yamagishi T, Ueda S, et al. (2007) Detection of anammox activity and diversity of anammox bacteria-related 16S rRNA genes in coastal marine sediment in Japan. Microbes Environ 22: 232-242.
    • (2007) Microbes Environ , vol.22 , pp. 232-242
    • Amano, T.1    Yoshinaga, I.2    Okada, K.3    Yamagishi, T.4    Ueda, S.5
  • 25
    • 65349094528 scopus 로고    scopus 로고
    • Biogeographical distribution of diverse anaerobic ammonium oxidizing (anammox) bacteria in Cape Fear River Estuary
    • Dale OR, Tobias CR, Song B, (2009) Biogeographical distribution of diverse anaerobic ammonium oxidizing (anammox) bacteria in Cape Fear River Estuary. Environ Microbiol 11: 1194-1207.
    • (2009) Environ Microbiol , vol.11 , pp. 1194-1207
    • Dale, O.R.1    Tobias, C.R.2    Song, B.3
  • 26
    • 38649094238 scopus 로고    scopus 로고
    • Anaerobic ammonium oxidation (anammox) in Chesapeake Bay sediments
    • Rich JJ, Dale OR, Song B, Ward BB, (2008) Anaerobic ammonium oxidation (anammox) in Chesapeake Bay sediments. Microbiol Ecol 53: 311-320.
    • (2008) Microbiol Ecol , vol.53 , pp. 311-320
    • Rich, J.J.1    Dale, O.R.2    Song, B.3    Ward, B.B.4
  • 27
    • 78149442933 scopus 로고    scopus 로고
    • Environmental factors shape sediment anammox bacterial communities in hypernutrified Jiaozhou Bay, China
    • Dang HY, Chen RP, Wang L, Guo LZ, Chen PP, et al. (2010) Environmental factors shape sediment anammox bacterial communities in hypernutrified Jiaozhou Bay, China. Appl Environ Microbiol 76: 7036-7047.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 7036-7047
    • Dang, H.Y.1    Chen, R.P.2    Wang, L.3    Guo, L.Z.4    Chen, P.P.5
  • 28
    • 64349121457 scopus 로고    scopus 로고
    • Study of the situation of benthos in the sea area around the sewage outfall of Jiaonan chemical industry area
    • Liu L, Ma DH, (2005) Study of the situation of benthos in the sea area around the sewage outfall of Jiaonan chemical industry area. J Mar Sci 23: 51-55.
    • (2005) J Mar Sci , vol.23 , pp. 51-55
    • Liu, L.1    Ma, D.H.2
  • 29
    • 64349122892 scopus 로고    scopus 로고
    • Distribution characteristics of intertidal zone macrozoobenthos in autumn and winter in chemical industrial Park and adjacent area, Jiaojiang Estuary
    • Zhao YQ, Chen QZ, Zeng JN, Shou L, Gao AG, et al. (2009) Distribution characteristics of intertidal zone macrozoobenthos in autumn and winter in chemical industrial Park and adjacent area, Jiaojiang Estuary. Acta Ecologica Sinica-China 29: 1578-1586.
    • (2009) Acta Ecologica Sinica-China , vol.29 , pp. 1578-1586
    • Zhao, Y.Q.1    Chen, Q.Z.2    Zeng, J.N.3    Shou, L.4    Gao, A.G.5
  • 30
    • 80053254813 scopus 로고    scopus 로고
    • Distribution of zooplankton in the Jiaojiang Estuary and its response to environment factors in spring and autumn
    • Du P, Xu XQ, Liu JJ, Zeng JN, Chen QZ, et al. (2011) Distribution of zooplankton in the Jiaojiang Estuary and its response to environment factors in spring and autumn. Chin J Appl Environ Biol 17: 486-494.
    • (2011) Chin J Appl Environ Biol , vol.17 , pp. 486-494
    • Du, P.1    Xu, X.Q.2    Liu, J.J.3    Zeng, J.N.4    Chen, Q.Z.5
  • 31
    • 0032424081 scopus 로고    scopus 로고
    • Monitoring a widespread bacterial group: in situ detection of planctomycetes with 16S rRNA-targeted probes
    • Neef A, Amann R, Schlesner H, Schleifer KH, (1998) Monitoring a widespread bacterial group: in situ detection of planctomycetes with 16S rRNA-targeted probes. Microbiology 144: 3257-3266.
    • (1998) Microbiology , vol.144 , pp. 3257-3266
    • Neef, A.1    Amann, R.2    Schlesner, H.3    Schleifer, K.H.4
  • 32
    • 0032147190 scopus 로고    scopus 로고
    • Combined molecular and conventional analyses of nitrifying bacterium diversity in activated sludge: Nitrosococcus mobilis and Nitrospira-like bacteria as dominant populations
    • Juretschko S, Timmermann G, Schmid MC, Schleifer KH, Pommerening-Röser A, et al. (1998) Combined molecular and conventional analyses of nitrifying bacterium diversity in activated sludge: Nitrosococcus mobilis and Nitrospira-like bacteria as dominant populations. Appl Environ Microbiol 64: 3042-3051.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3042-3051
    • Juretschko, S.1    Timmermann, G.2    Schmid, M.C.3    Schleifer, K.H.4    Pommerening-Röser, A.5
  • 33
    • 77149154647 scopus 로고    scopus 로고
    • Molecular detection of anammox bacteria in terrestrial ecosystems: distribution and diversity
    • Humbert S, Tarnawski S, Fromin N, Mallet MP, Aragno M, Zopfi J, (2010) Molecular detection of anammox bacteria in terrestrial ecosystems: distribution and diversity. ISME J 4: 450-454.
    • (2010) ISME J , vol.4 , pp. 450-454
    • Humbert, S.1    Tarnawski, S.2    Fromin, N.3    Mallet, M.P.4    Aragno, M.5    Zopfi, J.6
  • 34
    • 77950558812 scopus 로고    scopus 로고
    • Microbial and Physicochemical Characteristics of Compact Anaerobic Ammonium-Oxidizing Granules in an Upflow Anaerobic Sludge Blanket Reactor
    • Ni BJ, Hu BL, Fang F, Xie WM, Kartal B, et al. (2010) Microbial and Physicochemical Characteristics of Compact Anaerobic Ammonium-Oxidizing Granules in an Upflow Anaerobic Sludge Blanket Reactor. Appl Environ Microbiol 76: 2652-2656.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 2652-2656
    • Ni, B.J.1    Hu, B.L.2    Fang, F.3    Xie, W.M.4    Kartal, B.5
  • 35
    • 15444362001 scopus 로고    scopus 로고
    • Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
    • Schloss PD, Handelsman J, (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71: 1501-1506.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 36
    • 84863388096 scopus 로고    scopus 로고
    • CANOCO Reference Manual and CanoDraw for Windows User's Guide: Software for Canonical Community Ordination (version 4.5) Microcomputer Power (Ithaca NY, USA)
    • ter Braak CJF, Šmilauer P, (2002) CANOCO Reference Manual and CanoDraw for Windows User's Guide: Software for Canonical Community Ordination (version 4.5) Microcomputer Power (Ithaca NY, USA).
    • (2002)
    • ter Braak, C.J.F.1    Šmilauer, P.2
  • 37
    • 0034782218 scopus 로고    scopus 로고
    • Ecologically meaningful transformations for ordination of species data
    • Legendre P, Gallagher ED, (2001) Ecologically meaningful transformations for ordination of species data. Oecologia 129: 271-280.
    • (2001) Oecologia , vol.129 , pp. 271-280
    • Legendre, P.1    Gallagher, E.D.2
  • 38
    • 70349876732 scopus 로고    scopus 로고
    • Effects of nitrobenzene contamination and of bioaugmentation on nitrification and ammonia-oxidizing bacteria in soil
    • Zhao S, Ramette A, Niu GL, Liu H, Zhou NY, (2009) Effects of nitrobenzene contamination and of bioaugmentation on nitrification and ammonia-oxidizing bacteria in soil. FEMS Microbiol Ecol 70: 159-67.
    • (2009) FEMS Microbiol Ecol , vol.70 , pp. 159-167
    • Zhao, S.1    Ramette, A.2    Niu, G.L.3    Liu, H.4    Zhou, N.Y.5
  • 40
    • 49349092322 scopus 로고    scopus 로고
    • Change of bacterial communities in sediments along Songhua River in Northeastern China after a nitrobenzene pollution event
    • Li D, Yang M, Li ZL, Qi R, He JZ, et al. (2008) Change of bacterial communities in sediments along Songhua River in Northeastern China after a nitrobenzene pollution event. FEMS Microbiol Ecol 65: 494-503.
    • (2008) FEMS Microbiol Ecol , vol.65 , pp. 494-503
    • Li, D.1    Yang, M.2    Li, Z.L.3    Qi, R.4    He, J.Z.5
  • 41
    • 79952996497 scopus 로고    scopus 로고
    • Seasonal dynamics of anammox bacteria in estuarial sediment of the Mai Po Nature Reserve revealed by analyzing the 16S rRNA and hydrazine oxidoreductase (hzo) genes
    • Li M, Cao HL, Hong YG, Gu JD, (2011) Seasonal dynamics of anammox bacteria in estuarial sediment of the Mai Po Nature Reserve revealed by analyzing the 16S rRNA and hydrazine oxidoreductase (hzo) genes. Microbes Environ 26: 15-22.
    • (2011) Microbes Environ , vol.26 , pp. 15-22
    • Li, M.1    Cao, H.L.2    Hong, Y.G.3    Gu, J.D.4
  • 43
    • 33645741019 scopus 로고    scopus 로고
    • Deciphering the evolution and metabolism of an anammox bacterium from a community genome
    • Strous M, Pelletier E, Mangenot S, Rattei T, Lehner A, et al. (2006) Deciphering the evolution and metabolism of an anammox bacterium from a community genome. Nature 440: 790-794.
    • (2006) Nature , vol.440 , pp. 790-794
    • Strous, M.1    Pelletier, E.2    Mangenot, S.3    Rattei, T.4    Lehner, A.5
  • 44
    • 33645968401 scopus 로고    scopus 로고
    • Organic matter and nutrient inputs to the Humber Estuary, England
    • Boyes S, Elliott M, (2006) Organic matter and nutrient inputs to the Humber Estuary, England. Mar Pollut Bull 53: 136-143.
    • (2006) Mar Pollut Bull , vol.53 , pp. 136-143
    • Boyes, S.1    Elliott, M.2
  • 45
    • 84983867311 scopus 로고
    • Bacteria in intertidal sediments: factors related to their distribution
    • Dale NG, (1974) Bacteria in intertidal sediments: factors related to their distribution. Limnol Oceanogr 19: 509-518.
    • (1974) Limnol Oceanogr , vol.19 , pp. 509-518
    • Dale, N.G.1
  • 47
    • 33750311308 scopus 로고    scopus 로고
    • Adaptation of a freshwater anammox population to high salinity wastewater
    • Kartal B, Koleva M, Arsov R, van der Star W, Jetten MSM, et al. (2006) Adaptation of a freshwater anammox population to high salinity wastewater. J Biotech 126: 546-553.
    • (2006) J Biotech , vol.126 , pp. 546-553
    • Kartal, B.1    Koleva, M.2    Arsov, R.3    van der Star, W.4    Jetten, M.S.M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.